Carg16863 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16863
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_105 : 377493 .. 379155 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAACGCCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATCGTTGCTTCTCCTCTCCCTGTTTCTTCCCGATCGTCCTCCACCTTCAAACAAGGTAACCATATTTCCATTACATAGCATTTCATCATCAAAATTTGTATTGATTCATATAGCATTTGAGCTTTCTTCTGGGTTCTATTGCTTCTGTTTTTTGTTTGGTGGGTTGCGATTCTTCTGATTAAACTCCCCAGTTTCATTGATTTTCTTCAATGTTCATACAAATTGGTATTTGGGTTTTTGTTGGATCAGGAAATCTTATGCGTTGTCGTATTCAATCTGGTTTTTTCTGGCCATTTTCTGTTCTCTCTTGTTCATATAATCGTTGGTTGATTCATGGCCTAATATCGAACGTTTTCAGATTGGGGTTGCCCTTTTTTCTTCTCATTTTGTTTTCAGATCATCTGCATTCTGGCATGATTTGGCATATTGTTCTTCAATCCACTTTTAGAGTGTTACATCTAGAACAACTTTAAATCAATTTCCTCTCTCTCCAACGAAGAAAAGAAAATCCTCTATGAGCACTCATTCTTCTGTTTTAGGTGTAATGAATATATTGTAGTTTTTCTCCAATACCCACATGAATGAGGAGTCGGTTTGGCTTGTGTTCTTGAAAATCTCTGTTTTCTTATTACTTTTCCTTGCATTCATCTTAATTTAAGCCCATTTTGGGCTTTTCCATTTCTCTCAATGTTTTAAAACGCGTCTATAGGGAGAGATTTCTACACTCTTATAAGGAATGTTTCGTTCCCCTCCCCAACGATGTGGGATCTCACAACCGCCCCCCTTGGTGGCCTTGCATCCTCACTGGCACATCGCTTGATGTCTGGCCCTGATATCATTTGTAACTGCCCAAACTCACCGCTAGTAGATACTGTCCACTTTGGTTCGTTACGTATCGTTACTAGCCTTAAGGTTTTAAAATGTGTCTACTATGGAGAGGGTCTAGCCCTACTCCAACCAATGCATTGCACTGTTCGGTGATTGGTTCTGATACCATTTGTGCCAGTGAGGACGCTGAGTCTTGAAGGGGTAGATTTGTTAGGAATCACGAACCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCCATGATCATTTCCTAAATTAGCCGACGTGGGACTACCTCCTAACAATCCTCAACAGGATTGTGAGATCTCACATCGGTTGGAGAGATGAACAAAACATTCTTTATATGGGTATAGAAACCTCCCCTAGTGGACACACTTTAAAACTTTGAGTGAAGTCTTGAAGGAAAAATCTAAAGAGGACAATATTTGCTAGCGGTGGATTTAAACGGTTACATTGTCCACTTCATTGCAATAATAGTGATTAGGCTGAGCCATCCATTACTTTTGTTGATTCAAGGTCTTCACCTTTAGAGCCATATGCTGTGCAGGTTGATGTGCAAAAGCCCCATGACGTGATATCTCTTGCTTGGGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

mRNA sequence

CCGAACGCCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATCGTTGCTTCTCCTCTCCCTGTTTCTTCCCGATCGTCCTCCACCTTCAAACAAGCCCCATGACGTGATATCTCTTGCTTGGGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

Coding sequence (CDS)

CCGAACGCCTTCTTTCTAATTCCAATTCCATTGGAATCTGTCGTCCCAAATCAATCGTTGCTTCTCCTCTCCCTGTTTCTTCCCGATCGTCCTCCACCTTCAAACAAGCCCCATGACGTGATATCTCTTGCTTGGGATGCTGCTACTTTTCATGGACTGAACAAGTTGAATTGGCTGCCTTGGCCAGCCAATCCGACTGCCAACCCTTCTACATGGGCTGAACTTATTTAG

Protein sequence

PNAFFLIPIPLESVVPNQSLLLLSLFLPDRPPPSNKPHDVISLAWDAATFHGLNKLNWLPWPANPTANPSTWAELI

Homology

[Close]

BLAST of Carg16863 vs. NCBI nr
Match: XP_022145952.1 (probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145953.1 probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145954.1 probable myosin-binding protein 4 isoform X1 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 26  FLPDRPPP--------SNKPHDVISLAWDAATFHGLNKLNWLPWPANPTANPSTWAELI 77
           F+  RP P          KPH+V SLA DA TFHGL++LNWLPWPANPTA+PST  ELI
Sbjct: 296 FVGSRPSPLESYVQVDVQKPHNVKSLASDATTFHGLSELNWLPWPANPTADPSTLPELI 354

[Close]

BLAST of Carg16863 vs. NCBI nr
Match: XP_023534520.1 (probable myosin-binding protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 6.3e-09
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 36 KPHDVISLAWDAATFHGLNKLNWLPWPANPTANPSTWAELI 77
          KPHDV SLA D A FHGL++LNWLP P NP ANPSTWAELI
Sbjct: 8  KPHDVTSLACD-ANFHGLSELNWLPRPDNPIANPSTWAELI 47

[Close]

BLAST of Carg16863 vs. NCBI nr
Match: XP_022931010.1 (probable myosin-binding protein 4 [Cucurbita moschata])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 36  KPHDVISLAWDA-ATFHGLNKLNWLPWPANPTANPSTWAELI 77
           KPHDV   A DA A FHGL++LNWLP P NP A+PSTWAELI
Sbjct: 309 KPHDVTLPACDANANFHGLSELNWLPRPDNPIASPSTWAELI 350

The following BLAST results are available for this feature:

BLAST of Carg16863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145952.1	2.0e-10	61.02	probable myosin-binding protein 4 isoform X1 [Momordica charantia] >XP_022145953...	[more]
XP_023534520.1	6.3e-09	78.05	probable myosin-binding protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022931010.1	2.6e-07	71.43	probable myosin-binding protein 4 [Cucurbita moschata]	[more]

BLAST of Carg16863 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg16863 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16863 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16863-RA	Carg16863-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16863	CmaCh19G000640	Cucurbita maxima (Rimu)	carcmaB1049
Carg16863	Cla97C07G129000	Watermelon (97103) v2	carwmbB0788
Carg16863	Bhi05G000184	Wax gourd	carwgoB0888

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16863	Carg08980	Silver-seed gourd	carcarB599

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16863	Silver-seed gourd	carcarB262
Carg16863	Cucumber (Gy14) v2	carcgybB0745
Carg16863	Cucurbita maxima (Rimu)	carcmaB1052
Carg16863	Cucurbita maxima (Rimu)	carcmaB1051
Carg16863	Cucurbita moschata (Rifu)	carcmoB1021
Carg16863	Cucurbita moschata (Rifu)	carcmoB1023
Carg16863	Cucurbita moschata (Rifu)	carcmoB1025
Carg16863	Cucurbita pepo (Zucchini)	carcpeB1057
Carg16863	Cucurbita pepo (Zucchini)	carcpeB1058
Carg16863	Cucurbita pepo (Zucchini)	carcpeB1062
Carg16863	Wild cucumber (PI 183967)	carcpiB0783
Carg16863	Cucumber (Chinese Long) v2	carcuB0766
Carg16863	Cucumber (Chinese Long) v3	carcucB0786
Carg16863	Cucumber (Chinese Long) v3	carcucB0790
Carg16863	Bottle gourd (USVL1VR-Ls)	carlsiB687
Carg16863	Bottle gourd (USVL1VR-Ls)	carlsiB689
Carg16863	Melon (DHL92) v3.6.1	carmedB0760
Carg16863	Watermelon (Charleston Gray)	carwcgB0728
Carg16863	Watermelon (Charleston Gray)	carwcgB0730
Carg16863	Watermelon (97103) v1	carwmB0750
Carg16863	Watermelon (97103) v1	carwmB0753
Carg16863	Watermelon (97103) v2	carwmbB0787