Carg16711 (gene) Silver-seed gourd

Overview
NameCarg16711
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription factor, MADS-box
LocationCucurbita_argyrosperma_scaffold_087 : 69347 .. 71005 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGGGGAAAGTGGTGGTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGAGCTTCTCAAAGCGGAGAAATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGTGCTCTGCGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACCGAGTCAGTATATATATACATATATATATATCTTCTTACTCATTTGAACTTAACCCCTTTTTTTTTTCTTGTTTTGTAATGGGAATTCACTCCCATGATTAGCATGAACAAGATCCTTGAGAGGTGCCACCAGCAATGTTACAACACTGGATCAACCACCGATCTTCACCACACTCACATACAGGTATTGTTTGTATCAATATTAGTAGATATTAACTGTTTTAGTTCGTTACATATCATCATCAGTTTTATAGTTTTAAGACGCGTATATTAGGGAGAGATTTTCACACCCTTGTAATGAACGTTCCTATCTCCAACCGATGTGAGATCTTACAATCCGACCCTCTTGGGAGCTCAGCGTCACAGTCGCACTTTTGATGGCCGCGGACTTGCGATTGTGCGGTACTCACTTTCCAACGACAAGTGAATTAAGCTAATTCATTCTTACGTCGCCTACGGCCAAACGACGTATGCTCGAGCCTCTGGCTTTGGTTTAAGAAGAAGGTTTTAGAAAACAAGGGTAAAGAGAGATTTTCGAATGAGAAATTTTGAAAGAGACATTATATATGCAAGCAAGAGAGTAACAACAATAGCTCACGGTATATAACTATTGGTAGAAAGAAGTTGACAACTAGTCATATCCTCTATAATATATCATGAGCCATTTTATGTCTGGCAGACCTAGACATGATTTTTCCGAAACGTTATACTCCCTAGAAATACAATAGTAAAACACTAGAACATGGAAAGACAAAGGGTTTGGCTTGTCATGGGCATGTGGCCATGGGCAACATGCCTTGGACAAGCATGACCATGAAACCCAGCGTTCTTGCTAGCACACCATTCAGTATCTAACTTTGATACTATTTGTAACAGTCCAAGTCTACCCTTAGCAAATATTGTCAGTTTTGACTCGTTACTTATCACCGATAGCCTCACAATTTTAAGACACGTCTACTAGAGAGATGTTTGTCTTAAGATAGGTTTGAATTAACTTACAAAACTAAGGCTAACTATTTTGAATACAATGATTATCCACATCTTGATAATGCAGATAGAAGAGGTGTCAAAGCTAAGAGCAAAATACGAATCTCTGCAGCGTTCCCATAGGTTATTGAATTAAACATGTTAATCAAGATTTTATACACTTTTTTGTTGGAAAATTAGGGAGCAATTCTTGTTCGATGTGGTTTGTGAATATGAAGGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACAAACCAGACACCGGAAGGTATAACTCAGGATAAGGATTGGGTTATCCTTTTATTATTATTGTGTTGGACTCACTAAATTCATTACAACAATGATCCCTTGTATGCAGGTTGAGATAATGCTTCAAAAAATAGCATACTTGATAAAAGTGTGATAAACATGTAATGTGTAGCCTTTTGTGCATTGATAAAAGG

mRNA sequence

ATGGGAAGGGGGAAAGTGGTGGTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGAGCTTCTCAAAGCGGAGAAATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGTGCTCTGCGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACCGAGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACAAACCAGACACCGGAAGGTTGAGATAATGCTTCAAAAAATAGCATACTTGATAAAAGTGTGATAAACATGTAATGTGTAGCCTTTTGTGCATTGATAAAAGG

Coding sequence (CDS)

ATGGGAAGGGGGAAAGTGGTGGTTGAGAGAATAGAGAACAAAGTGAACCGTCAAGTGAGCTTCTCAAAGCGGAGAAATGGGTTATTGAAGAAGGCCAGTGAGCTGTCTGTGCTCTGCGATGTGGACGTTGCTCTCATCATCTTCTCTAGTCGGGGAAAGCTCTTTGAATTTGGCAGCACCGAGAACCTTGTTGGAGAAGAACTTGAAGCACTGAGCCTAAAAGAGTTGCATACTCTGGAGAAACAATTGGACAAAACTCTTTCACAAACCAGACACCGGAAGGTTGAGATAATGCTTCAAAAAATAGCATACTTGATAAAAGTGTGA

Protein sequence

MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTENLVGEELEALSLKELHTLEKQLDKTLSQTRHRKVEIMLQKIAYLIKV
Homology
[Close]
BLAST of Carg16711 vs. NCBI nr
Match: XP_022922550.1 (MADS-box transcription factor 6-like [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 96/148 (64.86%), Postives = 101/148 (68.24%), Query Frame = 0 

Query: 2   GRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGSTE 61
           G+GKVVVERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALI+FSSRGKLFEFGST+
Sbjct: 15  GKGKVVVERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIMFSSRGKLFEFGSTD 74

Query: 62  ----------------------------------------------NLVGEELEALSLKE 104
                                                         NLVGEELEALS+KE
Sbjct: 75  MNKILERYHHRCYNTGSTTNLHHTHVQIEEVSKLRAKYESLQRSHRNLVGEELEALSIKE 134

[Close]
BLAST of Carg16711 vs. NCBI nr
Match: XP_008439145.1 (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 92/154 (59.74%), Postives = 100/154 (64.94%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 109
           +                                              N +GEELE LSLK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

[Close]
BLAST of Carg16711 vs. NCBI nr
Match: XP_011651126.1 (PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 91/154 (59.09%), Postives = 100/154 (64.94%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 109
           +                                              N +GEELE L+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120

[Close]
BLAST of Carg16711 vs. NCBI nr
Match: XP_022141193.1 (MADS-box transcription factor 6-like [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 89/154 (57.79%), Postives = 97/154 (62.99%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKVV+ERIENKVNRQV+FSKRRNGLLKKA ELSVLCDVDVALIIF SRGKLFEF ST
Sbjct: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFYSRGKLFEFSST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 109
           +                                              N +GEELE L+LK
Sbjct: 61  DMNKILERYHQRCYSSGSTSNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120

[Close]
BLAST of Carg16711 vs. NCBI nr
Match: XP_018830769.1 (PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 [Juglans regia])

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 79/151 (52.32%), Postives = 94/151 (62.25%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+VV+ERIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKLF+FGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 106
           E                                              +++GE+LE L+LK
Sbjct: 61  EMNKILERYRQCCYSQDTDVVEQGTQTLYREITRLRAKYESLQRSQRHMLGEDLEPLNLK 120

[Close]
BLAST of Carg16711 vs. TAIR10
Match: AT2G45650.1 (AGAMOUS-like 6)

HSP 1 Score: 113.6 bits (283), Expect = 7.5e-26
Identity = 69/154 (44.81%), Postives = 89/154 (57.79%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS- 60
           MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  ----------------------------------------------TENLVGEELEALSL 108
                                                           NL+GE+L  + +
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120

[Close]
BLAST of Carg16711 vs. TAIR10
Match: AT3G61120.1 (AGAMOUS-like 13)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 66/151 (43.71%), Postives = 88/151 (58.28%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKV V+RIENK+ RQV+FSKR++GLLKKA ELSVLCD +V+LIIFS+ GKL+EF + 
Sbjct: 1   MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query: 61  ----------------------------------------------ENLVGEELEALSLK 106
                                                          NLVGE+LE +S+K
Sbjct: 61  GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

[Close]
BLAST of Carg16711 vs. TAIR10
Match: AT5G60910.1 (AGAMOUS-like 8)

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-23
Identity = 65/156 (41.67%), Postives = 86/156 (55.13%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFG-- 60
           MGRG+V ++RIENK+NRQV+FSKRR+GLLKKA E+SVLCD +VALI+FSS+GKLFE+   
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61  -----------------------------------------------STENLVGEELEAL 108
                                                          +  N +GE+L++L
Sbjct: 61  SCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSL 120

[Close]
BLAST of Carg16711 vs. TAIR10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 69/154 (44.81%), Postives = 87/154 (56.49%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEF--- 60
           MGRG+V ++RIENK+NRQV+F+KRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EF   
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  ---------------GSTE-------------------------------NLVGEELEAL 106
                          GS E                               NL+GE+L  L
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

[Close]
BLAST of Carg16711 vs. TAIR10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 104.4 bits (259), Expect = 4.6e-23
Identity = 66/154 (42.86%), Postives = 85/154 (55.19%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+V ++RIENK+NRQV+F+KRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  ----------------------------------------------------ENLVGEEL 103
                                                                NL+GE+L
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

[Close]
BLAST of Carg16711 vs. Swiss-Prot
Match: sp|Q7XUN2|MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS17 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 70/151 (46.36%), Postives = 89/151 (58.94%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  -------------------------------------------------ENLVGEELEAL 103
                                                             +++GE+L  L
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

[Close]
BLAST of Carg16711 vs. Swiss-Prot
Match: sp|Q6EU39|MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 71/152 (46.71%), Postives = 89/152 (58.55%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  -----------------------------------------------ENLVGEELEALSL 106
                                                           +L+GE+L  LS+
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

[Close]
BLAST of Carg16711 vs. Swiss-Prot
Match: sp|P29386|AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana OX=3702 GN=AGL6 PE=1 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 69/154 (44.81%), Postives = 89/154 (57.79%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGS- 60
           MGRG+V ++RIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  ----------------------------------------------TENLVGEELEALSL 108
                                                           NL+GE+L  + +
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120

[Close]
BLAST of Carg16711 vs. Swiss-Prot
Match: sp|Q38837|AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana OX=3702 GN=AGL13 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-23
Identity = 66/151 (43.71%), Postives = 88/151 (58.28%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKV V+RIENK+ RQV+FSKR++GLLKKA ELSVLCD +V+LIIFS+ GKL+EF + 
Sbjct: 1   MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query: 61  ----------------------------------------------ENLVGEELEALSLK 106
                                                          NLVGE+LE +S+K
Sbjct: 61  GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

[Close]
BLAST of Carg16711 vs. Swiss-Prot
Match: sp|Q39685|CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-23
Identity = 71/155 (45.81%), Postives = 87/155 (56.13%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+V ++RIENK+NRQV+F+KRRNGLLKKA ELSVLCD +VALI+FS+RGKL+EF ST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  ------------------------------------------------ENLVGEELEALS 108
                                                            NL+GE+L  LS
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

[Close]
BLAST of Carg16711 vs. TrEMBL
Match: tr|A0A1S3AY43|A0A1S3AY43_CUCME (MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 92/154 (59.74%), Postives = 100/154 (64.94%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKVV+ERIEN+VNRQV+FSKRRNGLLKKASELSVLCDVDVALIIFS+RGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 109
           +                                              N +GEELE LSLK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

[Close]
BLAST of Carg16711 vs. TrEMBL
Match: tr|A0A2I4FGK2|A0A2I4FGK2_9ROSI (truncated transcription factor CAULIFLOWER A-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108998622 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28
Identity = 79/151 (52.32%), Postives = 94/151 (62.25%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+VV+ERIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKLF+FGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 106
           E                                              +++GE+LE L+LK
Sbjct: 61  EMNKILERYRQCCYSQDTDVVEQGTQTLYREITRLRAKYESLQRSQRHMLGEDLEPLNLK 120

[Close]
BLAST of Carg16711 vs. TrEMBL
Match: tr|A0A2I4FGJ3|A0A2I4FGJ3_9ROSI (MADS-box transcription factor 6-like isoform X3 OS=Juglans regia OX=51240 GN=LOC108998622 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28
Identity = 79/151 (52.32%), Postives = 94/151 (62.25%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+VV+ERIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKLF+FGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 106
           E                                              +++GE+LE L+LK
Sbjct: 61  EMNKILERYRQCCYSQDTDVVEQGTQTLYREITRLRAKYESLQRSQRHMLGEDLEPLNLK 120

[Close]
BLAST of Carg16711 vs. TrEMBL
Match: tr|A0A2I4FGH7|A0A2I4FGH7_9ROSI (MADS-box transcription factor 6-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108998622 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.4e-28
Identity = 79/151 (52.32%), Postives = 94/151 (62.25%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRG+VV+ERIENK+NRQV+FSKRRNGLLKKA ELSVLCD +VALIIFSSRGKLF+FGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQFGST 60

Query: 61  E----------------------------------------------NLVGEELEALSLK 106
           E                                              +++GE+LE L+LK
Sbjct: 61  EMNKILERYRQCCYSQDTDVVEQGTQTLYREITRLRAKYESLQRSQRHMLGEDLEPLNLK 120

[Close]
BLAST of Carg16711 vs. TrEMBL
Match: tr|A0A224X4E7|A0A224X4E7_9ROSI (MADS OS=Hypericum tomentosum OX=1137039 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.3e-27
Identity = 78/155 (50.32%), Postives = 94/155 (60.65%), Query Frame = 0 

Query: 1   MGRGKVVVERIENKVNRQVSFSKRRNGLLKKASELSVLCDVDVALIIFSSRGKLFEFGST 60
           MGRGKVV+ERIENK+NRQV+FSKRRNGL+KKA ELSVLCD +VALI+FSSRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENKINRQVTFSKRRNGLIKKAYELSVLCDAEVALILFSSRGKLFEFGST 60

Query: 61  E------------------------------------------------NLVGEELEALS 108
           +                                                N++GE+L  LS
Sbjct: 61  DVGKTLQRYRQCCYALQKNSTGNEDGSQDLYQEVTKLTAKYESLQQSQRNMLGEDLGGLS 120

The following BLAST results are available for this feature:
BLAST of Carg16711 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922550.12.3e-3664.86MADS-box transcription factor 6-like [Cucurbita moschata][more]
XP_008439145.11.8e-3359.74PREDICTED: MADS-box transcription factor 17-like [Cucumis melo][more]
XP_011651126.14.0e-3359.09PREDICTED: MADS-box transcription factor 6-like [Cucumis sativus][more]
XP_022141193.11.7e-3157.79MADS-box transcription factor 6-like [Momordica charantia][more]
XP_018830769.11.1e-2752.32PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 [Juglans... [more]
BLAST of Carg16711 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G45650.17.5e-2644.81AGAMOUS-like 6[more]
AT3G61120.11.4e-2443.71AGAMOUS-like 13[more]
AT5G60910.12.7e-2341.67AGAMOUS-like 8[more]
AT5G15800.23.5e-2344.81K-box region and MADS-box transcription factor family protein [more]
AT1G24260.24.6e-2342.86K-box region and MADS-box transcription factor family protein [more]
BLAST of Carg16711 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7XUN2|MAD17_ORYSJ2.7e-2546.36MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
sp|Q6EU39|MADS6_ORYSJ2.7e-2546.71MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS... [more]
sp|P29386|AGL6_ARATH1.4e-2444.81Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana OX=3702 GN=AGL6 PE=1 ... [more]
sp|Q38837|AGL13_ARATH2.6e-2343.71Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana OX=3702 GN=AGL13 PE=... [more]
sp|Q39685|CMB1_DIACA3.3e-2345.81MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1[more]
BLAST of Carg16711 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AY43|A0A1S3AY43_CUCME1.2e-3359.74MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE... [more]
tr|A0A2I4FGK2|A0A2I4FGK2_9ROSI7.4e-2852.32truncated transcription factor CAULIFLOWER A-like isoform X1 OS=Juglans regia OX... [more]
tr|A0A2I4FGJ3|A0A2I4FGJ3_9ROSI7.4e-2852.32MADS-box transcription factor 6-like isoform X3 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2I4FGH7|A0A2I4FGH7_9ROSI7.4e-2852.32MADS-box transcription factor 6-like isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A224X4E7|A0A224X4E7_9ROSI6.3e-2750.32MADS OS=Hypericum tomentosum OX=1137039 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002487TF_Kbox
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16711-RACarg16711-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 59.76
coord: 23..38
score: 82.94
coord: 38..59
score: 61.35
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 4.0E-37
score: 139.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 6.8E-27
score: 92.6
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 30.571
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 61..105
e-value: 3.0E-12
score: 46.4
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 12..108
score: 7.016
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..68
e-value: 1.5E-25
score: 90.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 2..69
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 61..104
NoneNo IPR availablePANTHERPTHR11945:SF146AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATEDcoord: 61..104
NoneNo IPR availablePANTHERPTHR11945:SF146AGAMOUS-LIKE MADS-BOX PROTEIN AGL13-RELATEDcoord: 1..60
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..60
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..60
e-value: 3.2138E-34
score: 113.801