Carg16708 (gene) Silver-seed gourd

Overview
NameCarg16708
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_087 : 55262 .. 55774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCAGAGAAAGCGGCAGATTCATGGAGGGGTGATTAATTTGGGGCTAGGTGATCATTATGTGCAAAACTCGCGGATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTAGTGCAGGTAGGGTGTTTGATGAAATGTTTGTTTGAGATGTTGTGTCCTGGACTATCATGATCGCTGGATTGGGGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTCAAAGATGCGAAGCTTGGGTATTGGCCCTGATGGGATTATTTGAACTAGTGTTCTCTCTGCTTGTGCTAGCCTAGGAAGTCTTGGCTTTGGCACATGGGTCCATGAGTACATAGATCAAAGAGGAATCAAATGGAATATCCGTATTGGAACTGCTATTGTTGACATGTATGCCAAATGTTGGTGCATCGAAATGGCACTGCAAATCTTTAACAATATGCCTCAAAGAAATATACCTTCACTTGGAATGCCCTGCTATGCGGTCTGGCATTGCATGGAGTTGTGCAGGAAGCAT

mRNA sequence

GAGCAGAGAAAGCGGCAGATTCATGGAGGGGTGATTAATTTGGGGCTAGGTGATCATTATGTGCAAAACTCGCGGATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTAGTGCAGATGTTGTGTCCTGGACTATCATGATCGCTGGATTGGGGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTCAAAGATGCGAAGCTTGGGAAGTCTTGGCTTTGGCACATGGGTCCATGAGTACATAGATCAAAGAGGAATCAAATGGAATATCCGTATTGGAACTGCTATTGTTGACATGTATGCCAAATGTTGGTGCATCGAAATGGCACTGCAAATCTTTAACAATATGCCTCAAAGAAATATACCTTCACTTGGAATGCCCTGCTATGCGGTCTGGCATTGCATGGAGTTGTGCAGGAAGCAT

Coding sequence (CDS)

GAGCAGAGAAAGCGGCAGATTCATGGAGGGGTGATTAATTTGGGGCTAGGTGATCATTATGTGCAAAACTCGCGGATTCGTTGCTATGGAGCTTGTGGGGATTTTTCTAGTGCAGATGTTGTGTCCTGGACTATCATGATCGCTGGATTGGGGCAGAGTAACCATCCAAAAGAGTCCTTGGAGCTGTTTTCAAAGATGCGAAGCTTGGGAAGTCTTGGCTTTGGCACATGGGTCCATGAGTACATAGATCAAAGAGGAATCAAATGGAATATCCGTATTGGAACTGCTATTGTTGACATGTATGCCAAATGTTGGTGCATCGAAATGGCACTGCAAATCTTTAACAATATGCCTCAAAGAAATATACCTTCACTTGGAATGCCCTGCTATGCGGTCTGGCATTGCATGGAGTTGTGCAGGAAGCAT

Protein sequence

EQRKRQIHGGVINLGLGDHYVQNSRIRCYGACGDFSSADVVSWTIMIAGLGQSNHPKESLELFSKMRSLGSLGFGTWVHEYIDQRGIKWNIRIGTAIVDMYAKCWCIEMALQIFNNMPQRNIPSLGMPCYAVWHCMELCRKH
Homology
[Close]
BLAST of Carg16708 vs. NCBI nr
Match: XP_022984447.1 (pentatricopeptide repeat-containing protein At4g38010-like [Cucurbita maxima])

HSP 1 Score: 151.0 bits (380), Expect = 3.1e-33
Identity = 76/102 (74.51%), Postives = 79/102 (77.45%), Query Frame = 0 

Query: 39  DVVSWTIMIAGLGQSNHPKESLELFSKM-------------------RSLGSLGFGTWVH 98
           DVVSWTIMIAGLGQSNHPKESLELFSK+                    SLG+LGFGT VH
Sbjct: 5   DVVSWTIMIAGLGQSNHPKESLELFSKILTLGISPDGIIVTTVLSACASLGTLGFGTRVH 64

Query: 99  EYIDQRGIKWNIRIGTAIVDMYAKCWCIEMALQIFNNMPQRN 122
           EYIDQRGIKW+I IGTAIVDMYAKC CIEMALQIFNNMPQRN
Sbjct: 65  EYIDQRGIKWDIHIGTAIVDMYAKCGCIEMALQIFNNMPQRN 106

[Close]
BLAST of Carg16708 vs. NCBI nr
Match: XP_022141237.1 (pentatricopeptide repeat-containing protein At4g38010 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 76/131 (58.02%), Postives = 87/131 (66.41%), Query Frame = 0 

Query: 11  VINLGLGDHYVQNSRI-RCYGACGDFSSADVVSWTIMIAGLGQSNHPKESLELFSKMR-- 70
           V+   + D YV+N  +        D    D+VSWTI+I GL QSNHP+ESLELFS M+  
Sbjct: 238 VLGNAILDMYVKNGCLCEAKKVFDDLPVRDIVSWTIIITGLVQSNHPRESLELFSMMQTS 297

Query: 71  -----------------SLGSLGFGTWVHEYIDQRGIKWNIRIGTAIVDMYAKCWCIEMA 122
                            SLG+L FGTWVHEYIDQRGIKW+I IGTA+VDMYAKC CIEMA
Sbjct: 298 GISPDGIILTSVLSACASLGTLDFGTWVHEYIDQRGIKWDIHIGTAMVDMYAKCGCIEMA 357

[Close]
BLAST of Carg16708 vs. NCBI nr
Match: KGN60620.1 (hypothetical protein Csa_2G004700 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 94/244 (38.52%), Postives = 104/244 (42.62%), Query Frame = 0 

Query: 5   RQIHGGVINLG-LGDHYVQNSRIRCYGACGDFSSA------------------------- 64
           RQ+HG V+ LG L DHYVQNS IRCYGACGDFS A                         
Sbjct: 125 RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 184

Query: 65  ------------------------------------------------------------ 122
                                                                       
Sbjct: 185 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAML 244

[Close]
BLAST of Carg16708 vs. NCBI nr
Match: XP_011648657.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 94/244 (38.52%), Postives = 104/244 (42.62%), Query Frame = 0 

Query: 5   RQIHGGVINLG-LGDHYVQNSRIRCYGACGDFSSA------------------------- 64
           RQ+HG V+ LG L DHYVQNS IRCYGACGDFS A                         
Sbjct: 88  RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 147

Query: 65  ------------------------------------------------------------ 122
                                                                       
Sbjct: 148 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAML 207

[Close]
BLAST of Carg16708 vs. NCBI nr
Match: XP_011648658.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 94/244 (38.52%), Postives = 104/244 (42.62%), Query Frame = 0 

Query: 5   RQIHGGVINLG-LGDHYVQNSRIRCYGACGDFSSA------------------------- 64
           RQ+HG V+ LG L DHYVQNS IRCYGACGDFS A                         
Sbjct: 7   RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 66

Query: 65  ------------------------------------------------------------ 122
                                                                       
Sbjct: 67  GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAML 126

[Close]
BLAST of Carg16708 vs. TAIR10
Match: AT4G38010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-20
Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 33  GDFSSADVVSWTIMIAGLGQSNHPKESLELFSKMR--------------------SLGSL 92
           G+    D VSW  MI+GL      KE+++LFS M+                    SLG++
Sbjct: 263 GELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAV 322

Query: 93  GFGTWVHEYIDQRGIKWNIRIGTAIVDMYAKCWCIEMALQIFNNMPQRNI 123
             G WVHEYI   GIKW+  IGTAIVDMYAKC  IE AL+IFN +  +N+
Sbjct: 323 DHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372

[Close]
BLAST of Carg16708 vs. TAIR10
Match: AT3G57430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 7.1e-16
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 0 

Query: 3   RKRQIHGGVINLGLG-DHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLG 62
           RK  IHG V+  GL  D +VQN+ +  Y   G    A          D+V+W  MI G  
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 63  QSNHPKESLELFSKMR------------------------------SLGSLGFGTWVHEY 122
            S H +++L L  KM+                              +L +L  G  +H Y
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

[Close]
BLAST of Carg16708 vs. TAIR10
Match: AT1G69350.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 0 

Query: 5   RQIHGGVINLGLGDHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLGQSN 64
           +QIHG VI   + D +VQNS I  Y   G   SA           VV+W  M+ G  Q+ 
Sbjct: 425 KQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNG 484

Query: 65  HPKESLELFSKM-------------------RSLGSLGFGTWVHEYIDQRGIKWNIRIGT 124
           +  E++ LF  M                    S+GSL  G WVH  +   G+K ++   T
Sbjct: 485 NSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLFTDT 544

[Close]
BLAST of Carg16708 vs. TAIR10
Match: AT4G18520.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 0 

Query: 5   RQIHGGVINLGLGDHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLGQSN 64
           RQ+HG ++ +G+G+  V++S +  Y  CG+ +SA          DV+SWT +I+   +  
Sbjct: 204 RQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKG 263

Query: 65  HPKESLELFSKM-------------------RSLGSLGFGTWVHEYIDQRGIKWNIRIGT 122
           H  +++ +F  M                       +L FG  VH  + +R IK ++ +GT
Sbjct: 264 HGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGT 323

[Close]
BLAST of Carg16708 vs. TAIR10
Match: AT3G28660.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = 0 

Query: 5   RQIHGGVINLG--LGDHYVQNSRIRCY----------GACGDFSSADVVSWTIMIAGLGQ 64
           +QIH  V+  G  L D +VQ   +R Y              +    DVV W +++ G  +
Sbjct: 136 KQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVR 195

Query: 65  SNHPKESLELFSKM-------------------RSLGSLGFGTWVHEYI-DQRGIKWNIR 123
                E LE+F +M                     +G+L  G W+HE++  +R I+ ++ 
Sbjct: 196 CGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVF 255

[Close]
BLAST of Carg16708 vs. Swiss-Prot
Match: sp|Q9SZK1|PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-19
Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 33  GDFSSADVVSWTIMIAGLGQSNHPKESLELFSKMR--------------------SLGSL 92
           G+    D VSW  MI+GL      KE+++LFS M+                    SLG++
Sbjct: 263 GELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAV 322

Query: 93  GFGTWVHEYIDQRGIKWNIRIGTAIVDMYAKCWCIEMALQIFNNMPQRNI 123
             G WVHEYI   GIKW+  IGTAIVDMYAKC  IE AL+IFN +  +N+
Sbjct: 323 DHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372

[Close]
BLAST of Carg16708 vs. Swiss-Prot
Match: sp|Q7Y211|PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 0 

Query: 3   RKRQIHGGVINLGLG-DHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLG 62
           RK  IHG V+  GL  D +VQN+ +  Y   G    A          D+V+W  MI G  
Sbjct: 423 RKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482

Query: 63  QSNHPKESLELFSKMR------------------------------SLGSLGFGTWVHEY 122
            S H +++L L  KM+                              +L +L  G  +H Y
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAY 542

[Close]
BLAST of Carg16708 vs. Swiss-Prot
Match: sp|Q9C507|PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E66 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-14
Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 0 

Query: 5   RQIHGGVINLGLGDHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLGQSN 64
           +QIHG VI   + D +VQNS I  Y   G   SA           VV+W  M+ G  Q+ 
Sbjct: 425 KQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNG 484

Query: 65  HPKESLELFSKM-------------------RSLGSLGFGTWVHEYIDQRGIKWNIRIGT 124
           +  E++ LF  M                    S+GSL  G WVH  +   G+K ++   T
Sbjct: 485 NSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLFTDT 544

[Close]
BLAST of Carg16708 vs. Swiss-Prot
Match: sp|Q0WNP3|PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A2 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-14
Identity = 43/146 (29.45%), Postives = 74/146 (50.68%), Query Frame = 0 

Query: 5   RQIHGGVINLGLGDHYVQNSRIRCYGACGDFSSA----------DVVSWTIMIAGLGQSN 64
           RQ+HG ++ +G+G+  V++S +  Y  CG+ +SA          DV+SWT +I+   +  
Sbjct: 204 RQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKG 263

Query: 65  HPKESLELFSKM-------------------RSLGSLGFGTWVHEYIDQRGIKWNIRIGT 122
           H  +++ +F  M                       +L FG  VH  + +R IK ++ +GT
Sbjct: 264 HGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGT 323

[Close]
BLAST of Carg16708 vs. Swiss-Prot
Match: sp|Q9LJI9|PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-14
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = 0 

Query: 5   RQIHGGVINLG--LGDHYVQNSRIRCY----------GACGDFSSADVVSWTIMIAGLGQ 64
           +QIH  V+  G  L D +VQ   +R Y              +    DVV W +++ G  +
Sbjct: 136 KQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVR 195

Query: 65  SNHPKESLELFSKM-------------------RSLGSLGFGTWVHEYI-DQRGIKWNIR 123
                E LE+F +M                     +G+L  G W+HE++  +R I+ ++ 
Sbjct: 196 CGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVF 255

[Close]
BLAST of Carg16708 vs. TrEMBL
Match: tr|A0A0A0LF19|A0A0A0LF19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 94/244 (38.52%), Postives = 104/244 (42.62%), Query Frame = 0 

Query: 5   RQIHGGVINLG-LGDHYVQNSRIRCYGACGDFSSA------------------------- 64
           RQ+HG V+ LG L DHYVQNS IRCYGACGDFS A                         
Sbjct: 125 RQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKA 184

Query: 65  ------------------------------------------------------------ 122
                                                                       
Sbjct: 185 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAML 244

[Close]
BLAST of Carg16708 vs. TrEMBL
Match: tr|A0A1S3C7P6|A0A1S3C7P6_CUCME (pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497763 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31
Identity = 81/147 (55.10%), Postives = 93/147 (63.27%), Query Frame = 0 

Query: 7   IHGGV-----INLGLG----DHYVQNSRIRCYGAC----GDFSSADVVSWTIMIAGLGQS 66
           IHG +     +NL LG    D YV+N    C+        +  + D+VSWTIMI GL QS
Sbjct: 225 IHGVIERRFKVNLVLGNAMLDMYVKNG---CFYEAKKMFDELPTRDIVSWTIMITGLVQS 284

Query: 67  NHPKESLELFSKMR-------------------SLGSLGFGTWVHEYIDQRGIKWNIRIG 122
           +HPKESLELFS MR                   SLG+L FGTWVHEYI+QRGIKW+I  G
Sbjct: 285 DHPKESLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHTG 344

[Close]
BLAST of Carg16708 vs. TrEMBL
Match: tr|A0A1S3C7K9|A0A1S3C7K9_CUCME (pentatricopeptide repeat-containing protein At4g38010 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497763 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-31
Identity = 81/147 (55.10%), Postives = 93/147 (63.27%), Query Frame = 0 

Query: 7   IHGGV-----INLGLG----DHYVQNSRIRCYGAC----GDFSSADVVSWTIMIAGLGQS 66
           IHG +     +NL LG    D YV+N    C+        +  + D+VSWTIMI GL QS
Sbjct: 107 IHGVIERRFKVNLVLGNAMLDMYVKNG---CFYEAKKMFDELPTRDIVSWTIMITGLVQS 166

Query: 67  NHPKESLELFSKMR-------------------SLGSLGFGTWVHEYIDQRGIKWNIRIG 122
           +HPKESLELFS MR                   SLG+L FGTWVHEYI+QRGIKW+I  G
Sbjct: 167 DHPKESLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHTG 226

[Close]
BLAST of Carg16708 vs. TrEMBL
Match: tr|W9S388|W9S388_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005358 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.3e-27
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 0 

Query: 11  VINLGLGDHYVQNSRI-RCYGACGDFSSADVVSWTIMIAGLGQSNHPKESLELFSKMR-- 70
           V++  L D YV+  ++        +    D+VSWT MI+GL Q  HPKE+LELFS M+  
Sbjct: 240 VVSNALMDMYVKCEKLCEAKQIFDELDERDIVSWTCMISGLAQCKHPKEALELFSNMQPS 299

Query: 71  -----------------SLGSLGFGTWVHEYIDQRGIKWNIRIGTAIVDMYAKCWCIEMA 123
                            SLG+L +G WVHEYID+RGIKW+I++GTA+VDMYAKC CI++A
Sbjct: 300 GVEPDEIILTAVLSACASLGALDYGRWVHEYIDRRGIKWDIQVGTAMVDMYAKCGCIDIA 359

[Close]
BLAST of Carg16708 vs. TrEMBL
Match: tr|A0A251QN06|A0A251QN06_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G288100 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 64/148 (43.24%), Postives = 84/148 (56.76%), Query Frame = 0 

Query: 5   RQIHGGVINLGLGDHYVQNSRI-----RCYGAC------GDFSSADVVSWTIMIAGLGQS 64
           + IHG +    LG + V  + I     +C   C       +    D+VSWT MI+GL Q 
Sbjct: 227 KAIHGLIFKRSLGTNLVVGNAIVDMYVKCESLCDAKKIFDELPERDIVSWTSMISGLVQC 286

Query: 65  NHPKESLELFSKMR-------------------SLGSLGFGTWVHEYIDQRGIKWNIRIG 123
             P+ESLELF  M+                   SLG+L +G WVHEYID+RGIKW+I IG
Sbjct: 287 KRPRESLELFCNMQTLGIKPDKIILASVLSACASLGALDYGRWVHEYIDRRGIKWDIHIG 346

The following BLAST results are available for this feature:
BLAST of Carg16708 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022984447.13.1e-3374.51pentatricopeptide repeat-containing protein At4g38010-like [Cucurbita maxima][more]
XP_022141237.14.4e-3258.02pentatricopeptide repeat-containing protein At4g38010 [Momordica charantia][more]
KGN60620.13.8e-3138.52hypothetical protein Csa_2G004700 [Cucumis sativus][more]
XP_011648657.13.8e-3138.52PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cuc... [more]
XP_011648658.13.8e-3138.52PREDICTED: pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cuc... [more]
BLAST of Carg16708 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38010.12.8e-2044.55Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G57430.17.1e-1629.19Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G69350.11.2e-1533.56Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G18520.11.6e-1529.45Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G28660.12.1e-1530.67Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg16708 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SZK1|PP355_ARATH5.0e-1944.55Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX... [more]
sp|Q7Y211|PP285_ARATH1.3e-1429.19Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop... [more]
sp|Q9C507|PP111_ARATH2.2e-1433.56Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS... [more]
sp|Q0WNP3|PP319_ARATH2.9e-1429.45Pentatricopeptide repeat-containing protein At4g18520, chloroplastic OS=Arabidop... [more]
sp|Q9LJI9|PP260_ARATH3.7e-1430.67Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg16708 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF19|A0A0A0LF19_CUCSA2.5e-3138.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004700 PE=4 SV=1[more]
tr|A0A1S3C7P6|A0A1S3C7P6_CUCME7.2e-3155.10pentatricopeptide repeat-containing protein At4g38010 isoform X1 OS=Cucumis melo... [more]
tr|A0A1S3C7K9|A0A1S3C7K9_CUCME7.2e-3155.10pentatricopeptide repeat-containing protein At4g38010 isoform X2 OS=Cucumis melo... [more]
tr|W9S388|W9S388_9ROSA8.3e-2747.73Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_005358 PE=4 SV=1[more]
tr|A0A251QN06|A0A251QN06_PRUPE4.5e-2543.24Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G288100 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16708-RACarg16708-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 22..139
e-value: 1.4E-14
score: 55.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 41..70
e-value: 1.1E-5
score: 23.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 95..122
e-value: 0.005
score: 16.9
coord: 41..70
e-value: 3.1E-7
score: 30.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 10.041
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 7.487
NoneNo IPR availablePANTHERPTHR24015:SF266SUBFAMILY NOT NAMEDcoord: 38..66
coord: 67..123
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 38..66
coord: 67..123