Carg16552 (gene) Silver-seed gourd

Overview
NameCarg16552
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCRIB domain-containing protein RIC7-like
LocationCucurbita_argyrosperma_scaffold_089 : 299855 .. 301696 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCGTAGTTCCGTCATAATCGATTCTTCTCCCAACTAATCAGGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGTACGTCTACCTTCCTCAATCTTACGCTCAACCAGGTTTCACTCCCTTTTCTCTTTAATCTCCCTTTTATTTGGAAATCACGCTTTTATTTAAGCTGTGATTGTGAATTTTGTTTGAATCGCAGGCGTAGGACTATTCATTATTTAGGTTGAAGTTTTTTCTTTTTCTTTTTCCTCTCGAGATCGGGTAGTTAAGGGTTTCAGTTTATAGCTAATCGGAAGACGAAAGAAAAATGGGTACCTCTGTTAAGGGCCTCATGAAAGGAATTAAATACATTTCACAGATTTTCGGTATGTTTTCTTTTTCTTCTTTTCGATTTCGTTTTGGTTTTGGTTTTGGTTTTCCCCCAATTTGCTCTGGGTTGTAAAATATATTGAACGATCGGTTTGAGCGAAATTCTTGCAGATGAAAAAGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTCGCTCACATTGGATGGGATGGTCCATCTGCTAATCAGAATAATACACCTACCTGGGTATGAATAATCTCAGCCCTATTTGATTTCATCTTTTGTTTTCAAGTTTTCTGAACATCGATTTGAATTGTATGTGTGATGCAAAATTTAACAGATGAACGAGTTCAAATCTTCGCCACAATCCCAAGACTCAGGCGATTTGACTAATTCTACTGGGGAACTTGCTCTTTCTTCTGTCCGAGGTATGCTTCATCTTCTTCTTCTAATCTATATTCTGGGGTGACTGAGAATTATTAAGATCAAACATTATCTCTGTTGGTATAAAGTTTTTTGGAAAATTAGAAGCAAAGCCATGAGAGCTACACAATATCGGAGTTTGAGGGTGACTGAGATTTGGTTTAGAATGCTGGTTTTTGGTATGTTTGAAATCTTCCTGAGGATGTAGAATTGAAGTTGGTAATAGGAGTGATATTTGTGTATAGAATCTGGAGAGCTAGATGTGAAAAAGGAAGGTCGAGCTCCAAGGTCAAAACGCCAGACTTCAACAGACTCTTCCTCATCCTTAGACTCTTCTTCTGCTCGGCGGAACTCGGAGAAGAGCTCCAGGCGTCAGCGATCATCATGCCCCTCAGGTGACTCGGGACCCCAGGAAGGTAGTTCGCGACATTCACGACGTCGTCGTGGTTCAGCTCCTGGAAATGAAACAAGCACAGAAAATCCTATACCAAAACATTCTCATCGGAGGAAATCTAAGGGGTCATCGGACGGTGGTGAATCGTCAAAATCAAGAAACAACGACTCTTTAACAGACATAACTCTACCAGTTGTTGACGAAGAGAAGGGATGAGCAGAATTCCAGACAAGGAACTACTAAACGGCATTTCAAATGGTTCCTTGCCCCAATAAGGACCAAATTTTGTTACCTTGGAGATGATATGATTTTTAGCTTCAGTAATCGGTTATTGTTTTACTACCAAGCAGAAGGGTGTTGTTCTGTAACATGAGCGAACAGCCATTTCTTGAAAATAATGTCCCACATGTAATCTGAAATTTGGATTTCTACATTGTTCAGCACCCCTTTTCAATCCAGTGGGGTTTAGTATGATCATCATAAGCCACTGTTACTGACAAAGCTTTGTAGTCACAATAACAGCACTTAGATAGAGCTTATTGTTCCTTTCTCAAATTTGTTGCACTTTTATGCACCATATGAAACATTTCATCTCTCAAGTAATACAACTCTCTTTCCGTCT

mRNA sequence

TTTCCGTAGTTCCGTCATAATCGATTCTTCTCCCAACTAATCAGGTTTTGATTGACTGGTCTCCGGCTTCCATTTCCCACACCATTTTCCTTTTCCGGCCACCGTCGATCAAAACCTGCCCATTTCCGCCCGTTCTCGTACGTCTACCTTCCTCAATCTTACGCTCAACCAGGCGTAGGACTATTCATTATTTAGGTTGAAGTTTTTTCTTTTTCTTTTTCCTCTCGAGATCGGGTAGTTAAGGGTTTCAGTTTATAGCTAATCGGAAGACGAAAGAAAAATGGGTACCTCTGTTAAGGGCCTCATGAAAGGAATTAAATACATTTCACAGATTTTCGATGAAAAAGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTCGCTCACATTGGATGGGATGGTCCATCTGCTAATCAGAATAATACACCTACCTGGATGAACGAGTTCAAATCTTCGCCACAATCCCAAGACTCAGGCGATTTGACTAATTCTACTGGGGAACTTGCTCTTTCTTCTGTCCGAGAATCTGGAGAGCTAGATGTGAAAAAGGAAGGTCGAGCTCCAAGGTCAAAACGCCAGACTTCAACAGACTCTTCCTCATCCTTAGACTCTTCTTCTGCTCGGCGGAACTCGGAGAAGAGCTCCAGGCGTCAGCGATCATCATGCCCCTCAGGTGACTCGGGACCCCAGGAAGGTAGTTCGCGACATTCACGACGTCGTCGTGGTTCAGCTCCTGGAAATGAAACAAGCACAGAAAATCCTATACCAAAACATTCTCATCGGAGGAAATCTAAGGGGTCATCGGACGGTGGTGAATCGTCAAAATCAAGAAACAACGACTCTTTAACAGACATAACTCTACCAGTTGTTGACGAAGAGAAGGGATGAGCAGAATTCCAGACAAGGAACTACTAAACGGCATTTCAAATGGTTCCTTGCCCCAATAAGGACCAAATTTTGTTACCTTGGAGATGATATGATTTTTAGCTTCAGTAATCGGTTATTGTTTTACTACCAAGCAGAAGGGTGTTGTTCTGTAACATGAGCGAACAGCCATTTCTTGAAAATAATGTCCCACATGTAATCTGAAATTTGGATTTCTACATTGTTCAGCACCCCTTTTCAATCCAGTGGGGTTTAGTATGATCATCATAAGCCACTGTTACTGACAAAGCTTTGTAGTCACAATAACAGCACTTAGATAGAGCTTATTGTTCCTTTCTCAAATTTGTTGCACTTTTATGCACCATATGAAACATTTCATCTCTCAAGTAATACAACTCTCTTTCCGTCT

Coding sequence (CDS)

ATGGGTACCTCTGTTAAGGGCCTCATGAAAGGAATTAAATACATTTCACAGATTTTCGATGAAAAAGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTCGCTCACATTGGATGGGATGGTCCATCTGCTAATCAGAATAATACACCTACCTGGATGAACGAGTTCAAATCTTCGCCACAATCCCAAGACTCAGGCGATTTGACTAATTCTACTGGGGAACTTGCTCTTTCTTCTGTCCGAGAATCTGGAGAGCTAGATGTGAAAAAGGAAGGTCGAGCTCCAAGGTCAAAACGCCAGACTTCAACAGACTCTTCCTCATCCTTAGACTCTTCTTCTGCTCGGCGGAACTCGGAGAAGAGCTCCAGGCGTCAGCGATCATCATGCCCCTCAGGTGACTCGGGACCCCAGGAAGGTAGTTCGCGACATTCACGACGTCGTCGTGGTTCAGCTCCTGGAAATGAAACAAGCACAGAAAATCCTATACCAAAACATTCTCATCGGAGGAAATCTAAGGGGTCATCGGACGGTGGTGAATCGTCAAAATCAAGAAACAACGACTCTTTAACAGACATAACTCTACCAGTTGTTGACGAAGAGAAGGGATGA

Protein sequence

MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKSSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSTDSSSSLDSSSARRNSEKSSRRQRSSCPSGDSGPQEGSSRHSRRRRGSAPGNETSTENPIPKHSHRRKSKGSSDGGESSKSRNNDSLTDITLPVVDEEKG
Homology
[Close]
BLAST of Carg16552 vs. NCBI nr
Match: XP_022924780.1 (CRIB domain-containing protein RIC7-like [Cucurbita moschata] >XP_022924781.1 CRIB domain-containing protein RIC7-like [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 204/205 (99.51%), Postives = 205/205 (100.00%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK
Sbjct: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX 120
           SSPQSQ+SGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX
Sbjct: 61  SSPQSQNSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG 180
           XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG
Sbjct: 121 XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG 180

Query: 181 GESSKSRNNDSLTDITLPVVDEEKG 206
           GESSKSRNNDSLTDITLPVVDEEKG
Sbjct: 181 GESSKSRNNDSLTDITLPVVDEEKG 205

[Close]
BLAST of Carg16552 vs. NCBI nr
Match: XP_023528703.1 (CRIB domain-containing protein RIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 199/205 (97.07%), Postives = 201/205 (98.05%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK
Sbjct: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX 120
           SS QSQ+S DL +STGEL LSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX
Sbjct: 61  SSSQSQNSDDLASSTGELDLSSVRESGELDVKKEGRAPRSKRQTSXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG 180
           XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG
Sbjct: 121 XXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDG 180

Query: 181 GESSKSRNNDSLTDITLPVVDEEKG 206
           GESSKSRNNDSLTDITLPVVDEEKG
Sbjct: 181 GESSKSRNNDSLTDITLPVVDEEKG 205

[Close]
BLAST of Carg16552 vs. NCBI nr
Match: XP_022979372.1 (CRIB domain-containing protein RIC7-like [Cucurbita maxima] >XP_022979373.1 CRIB domain-containing protein RIC7-like [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 1.2e-49
Identity = 185/214 (86.45%), Postives = 186/214 (86.92%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK
Sbjct: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTS------XXXXXXXXX 120
           SSPQSQ+SGDL NSTGELALSSVRESGELDVKKEGRAPRSKRQTS      XXXXXXXXX
Sbjct: 61  SSPQSQNSGDLANSTGELALSSVRESGELDVKKEGRAPRSKRQTSTDXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENPVPKHSXXXXX 180

Query: 181 XXSSDGGESSKSRNNDSLTDITLPV---VDEEKG 206
           XX       SKSRNNDSLTDITLPV   VDEEKG
Sbjct: 181 XXXXXXXXXSKSRNNDSLTDITLPVLEAVDEEKG 214

[Close]
BLAST of Carg16552 vs. NCBI nr
Match: XP_008438496.1 (PREDICTED: CRIB domain-containing protein RIC7-like [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 5.4e-39
Identity = 178/217 (82.03%), Postives = 190/217 (87.56%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           M TSVKGL+KG++YISQIFDEKE EMQIGLPTDVKHVAHIGWDGPS NQNNTP+WMNEFK
Sbjct: 1   MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPSWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSS----VRESGELDVKKEGRAPRSKRQTS--XXXXXXXXX 120
           SSP++Q S DL +S GEL LSS     +ESGELDV+K  RAPRSKRQTS  XXXXXXXXX
Sbjct: 61  SSPKTQTSSDLVSSIGELDLSSANIPTQESGELDVQKASRAPRSKRQTSSXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXSSDGGE---SSKSRNNDSLTDITLPV---VDEEKG 206
           XXSSD GE   SS+SR+N+SLTDI LPV   VDEEKG
Sbjct: 181 XXSSDSGESTRSSRSRDNNSLTDIPLPVLEAVDEEKG 217

[Close]
BLAST of Carg16552 vs. NCBI nr
Match: XP_004134407.1 (PREDICTED: CRIB domain-containing protein RIC5-like [Cucumis sativus] >KGN56841.1 hypothetical protein Csa_3G134890 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           M TSVKGL+KG++YISQIFDEKE EMQIGLPTDVKHVAHIGWDGPS NQNNTPTWMNEFK
Sbjct: 1   MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPTWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSS----VRESGELDVKKEGRAPRSKR 103
           SSP++Q S DL +S GEL L+S     +ESG+LDV+K  RAPRSKR
Sbjct: 61  SSPKTQTSNDLVSSIGELDLTSTNIPTQESGDLDVQKASRAPRSKR 106

[Close]
BLAST of Carg16552 vs. TAIR10
Match: AT2G33460.1 (ROP-interactive CRIB motif-containing protein 1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-19
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 60
          M T++KGL+KG++YI+QIFD EKEQEMQIG PTDVKHVAHIG DGP+   N TP+WMN+F
Sbjct: 1  MATTMKGLLKGLRYITQIFDEEKEQEMQIGFPTDVKHVAHIGSDGPT---NTTPSWMNDF 60

Query: 61 KSSPQSQDSGDLTN 74
          K+  Q  + G + +
Sbjct: 61 KT--QEHEKGQVVS 69

[Close]
BLAST of Carg16552 vs. TAIR10
Match: AT4G28556.1 (PAK-box/P21-Rho-binding family protein)

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-19
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 3   TSVKGLMKGIKYISQIF---DEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 62
           T +K L+KG++YISQ+F    EKE+EMQIG PTDVKHVAHIGWDGPS N    P+WMN+F
Sbjct: 8   TKMKSLLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGPSDNA-TAPSWMNDF 67

Query: 63  KSSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTS 106
           KSSP  +    L      +   S       D+ K    P+S R++S
Sbjct: 68  KSSPVMESIQGLGEDDSSVKCQSEFGGRTRDLPK---LPKSTRKSS 109

[Close]
BLAST of Carg16552 vs. TAIR10
Match: AT3G23380.1 (ROP-interactive CRIB motif-containing protein 5)

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-19
Identity = 42/67 (62.69%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIF-DEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 60
          M + +KGL+KG++YI++IF DEKE EMQIG+PTDVKHVAHIGW+GPSA    TP+WM++F
Sbjct: 1  MTSPMKGLLKGLRYIARIFEDEKEPEMQIGIPTDVKHVAHIGWEGPSA---TTPSWMHDF 60

Query: 61 KSSPQSQ 67
          K + Q++
Sbjct: 61 KPTDQTK 64

[Close]
BLAST of Carg16552 vs. TAIR10
Match: AT2G20430.1 (ROP-interactive CRIB motif-containing protein 6)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 3  TSVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKS 62
          + +K L+KG++YISQ+F+ EKE+E+QIG PTDVKHVAHIGWDGPSAN    P+WM EF S
Sbjct: 8  SKMKSLLKGLRYISQVFESEKEEEIQIGNPTDVKHVAHIGWDGPSANA-TAPSWMTEFNS 66

[Close]
BLAST of Carg16552 vs. TAIR10
Match: AT1G04450.1 (ROP-interactive CRIB motif-containing protein 3)

HSP 1 Score: 84.7 bits (208), Expect = 7.1e-17
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 4  SVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKSS 63
          +VKGL+KG++YI+QIFD EK+++MQIG PTDVKHVAHIG DGP+    N P+WM +FK  
Sbjct: 3  TVKGLLKGLRYITQIFDEEKDKDMQIGFPTDVKHVAHIGSDGPA---TNVPSWMGDFK-- 62

Query: 64 PQSQDSGDLTN 74
          PQ  ++G + +
Sbjct: 63 PQENENGQVVS 68

[Close]
BLAST of Carg16552 vs. Swiss-Prot
Match: sp|F4IVV0|RIC1_ARATH (CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana OX=3702 GN=RIC1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-18
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 60
          M T++KGL+KG++YI+QIFD EKEQEMQIG PTDVKHVAHIG DGP+   N TP+WMN+F
Sbjct: 1  MATTMKGLLKGLRYITQIFDEEKEQEMQIGFPTDVKHVAHIGSDGPT---NTTPSWMNDF 60

Query: 61 KSSPQSQDSGDLTN 74
          K+  Q  + G + +
Sbjct: 61 KT--QEHEKGQVVS 69

[Close]
BLAST of Carg16552 vs. Swiss-Prot
Match: sp|Q1G3K8|RIC7_ARATH (CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 3   TSVKGLMKGIKYISQIF---DEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 62
           T +K L+KG++YISQ+F    EKE+EMQIG PTDVKHVAHIGWDGPS N    P+WMN+F
Sbjct: 8   TKMKSLLKGLRYISQVFAIEGEKEEEMQIGNPTDVKHVAHIGWDGPSDNA-TAPSWMNDF 67

Query: 63  KSSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTS 106
           KSSP  +    L      +   S       D+ K    P+S R++S
Sbjct: 68  KSSPVMESIQGLGEDDSSVKCQSEFGGRTRDLPK---LPKSTRKSS 109

[Close]
BLAST of Carg16552 vs. Swiss-Prot
Match: sp|F4J424|RIC5_ARATH (CRIB domain-containing protein RIC5 OS=Arabidopsis thaliana OX=3702 GN=RIC5 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 42/67 (62.69%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIF-DEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEF 60
          M + +KGL+KG++YI++IF DEKE EMQIG+PTDVKHVAHIGW+GPSA    TP+WM++F
Sbjct: 1  MTSPMKGLLKGLRYIARIFEDEKEPEMQIGIPTDVKHVAHIGWEGPSA---TTPSWMHDF 60

Query: 61 KSSPQSQ 67
          K + Q++
Sbjct: 61 KPTDQTK 64

[Close]
BLAST of Carg16552 vs. Swiss-Prot
Match: sp|Q1PF35|RIC6_ARATH (CRIB domain-containing protein RIC6 OS=Arabidopsis thaliana OX=3702 GN=RIC6 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 3  TSVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKS 62
          + +K L+KG++YISQ+F+ EKE+E+QIG PTDVKHVAHIGWDGPSAN    P+WM EF S
Sbjct: 8  SKMKSLLKGLRYISQVFESEKEEEIQIGNPTDVKHVAHIGWDGPSANA-TAPSWMTEFNS 66

[Close]
BLAST of Carg16552 vs. Swiss-Prot
Match: sp|F4I5N6|RIC3_ARATH (CRIB domain-containing protein RIC3 OS=Arabidopsis thaliana OX=3702 GN=RIC3 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 4  SVKGLMKGIKYISQIFD-EKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKSS 63
          +VKGL+KG++YI+QIFD EK+++MQIG PTDVKHVAHIG DGP+    N P+WM +FK  
Sbjct: 3  TVKGLLKGLRYITQIFDEEKDKDMQIGFPTDVKHVAHIGSDGPA---TNVPSWMGDFK-- 62

Query: 64 PQSQDSGDLTN 74
          PQ  ++G + +
Sbjct: 63 PQENENGQVVS 68

[Close]
BLAST of Carg16552 vs. TrEMBL
Match: tr|A0A1S3AWI0|A0A1S3AWI0_CUCME (CRIB domain-containing protein RIC7-like OS=Cucumis melo OX=3656 GN=LOC103483575 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 178/217 (82.03%), Postives = 190/217 (87.56%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           M TSVKGL+KG++YISQIFDEKE EMQIGLPTDVKHVAHIGWDGPS NQNNTP+WMNEFK
Sbjct: 1   MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPSWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSS----VRESGELDVKKEGRAPRSKRQTS--XXXXXXXXX 120
           SSP++Q S DL +S GEL LSS     +ESGELDV+K  RAPRSKRQTS  XXXXXXXXX
Sbjct: 61  SSPKTQTSSDLVSSIGELDLSSANIPTQESGELDVQKASRAPRSKRQTSSXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXSSDGGE---SSKSRNNDSLTDITLPV---VDEEKG 206
           XXSSD GE   SS+SR+N+SLTDI LPV   VDEEKG
Sbjct: 181 XXSSDSGESTRSSRSRDNNSLTDIPLPVLEAVDEEKG 217

[Close]
BLAST of Carg16552 vs. TrEMBL
Match: tr|A0A0A0L9S1|A0A0A0L9S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134890 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.8e-37
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           M TSVKGL+KG++YISQIFDEKE EMQIGLPTDVKHVAHIGWDGPS NQNNTPTWMNEFK
Sbjct: 1   MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPTWMNEFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSS----VRESGELDVKKEGRAPRSKR 103
           SSP++Q S DL +S GEL L+S     +ESG+LDV+K  RAPRSKR
Sbjct: 61  SSPKTQTSNDLVSSIGELDLTSTNIPTQESGDLDVQKASRAPRSKR 106

[Close]
BLAST of Carg16552 vs. TrEMBL
Match: tr|A0A251QSB5|A0A251QSB5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G041800 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 0 

Query: 1   MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
           M T VKGL+KG++YIS +F+EK+ E+QIG PTDVKHVAHIGW+GPSA  N+TP+WMN+FK
Sbjct: 1   MATKVKGLLKGLRYISHMFEEKDDEIQIGFPTDVKHVAHIGWEGPSA--NSTPSWMNDFK 60

Query: 61  SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQT 105
           SSP+   +G L  +  EL+   + + G+  V      PRS+R +
Sbjct: 61  SSPEVSSAGQL--AVKELSSQDMHKPGQQLVVHRSDIPRSRRHS 100

[Close]
BLAST of Carg16552 vs. TrEMBL
Match: tr|A0A2I4ENG4|A0A2I4ENG4_9ROSI (CRIB domain-containing protein RIC7 OS=Juglans regia OX=51240 GN=LOC108991211 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
          M T VKGL+KG++YISQIFDEKEQ+MQIG PTDVKHVAHIGWDGPSA   NTP+WM EF+
Sbjct: 1  MATKVKGLLKGLRYISQIFDEKEQDMQIGYPTDVKHVAHIGWDGPSA---NTPSWMREFE 60

Query: 61 SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEG 96
          SS   + S    +S GE  LSS       D+KK G
Sbjct: 61 SS--GEVSSRSLDSFGEDKLSS------KDIKKTG 84

[Close]
BLAST of Carg16552 vs. TrEMBL
Match: tr|A0A2P6QR63|A0A2P6QR63_ROSCH (Putative CRIB domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0394211 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 0 

Query: 1  MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFK 60
          M T VKGL+KG++YI+QIF+EK+QE+QIG PTDVKHVAHIGWDGPSA  N+TPTWM+EFK
Sbjct: 1  MATKVKGLLKGLRYITQIFEEKDQEIQIGFPTDVKHVAHIGWDGPSA--NSTPTWMSEFK 60

Query: 61 SSPQSQDSGDLTNSTGELALSSVRESGELDVKKEG 96
           SPQ         S G+LA   V+E    D+ K G
Sbjct: 61 -SPQ--------ESAGQLA---VKELSAKDINKTG 81

The following BLAST results are available for this feature:
BLAST of Carg16552 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924780.13.3e-6099.51CRIB domain-containing protein RIC7-like [Cucurbita moschata] >XP_022924781.1 CR... [more]
XP_023528703.11.3e-5697.07CRIB domain-containing protein RIC1-like [Cucurbita pepo subsp. pepo][more]
XP_022979372.11.2e-4986.45CRIB domain-containing protein RIC7-like [Cucurbita maxima] >XP_022979373.1 CRIB... [more]
XP_008438496.15.4e-3982.03PREDICTED: CRIB domain-containing protein RIC7-like [Cucumis melo][more]
XP_004134407.11.5e-3676.42PREDICTED: CRIB domain-containing protein RIC5-like [Cucumis sativus] >KGN56841.... [more]
BLAST of Carg16552 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33460.12.6e-1962.16ROP-interactive CRIB motif-containing protein 1[more]
AT4G28556.15.8e-1949.06PAK-box/P21-Rho-binding family protein[more]
AT3G23380.19.9e-1962.69ROP-interactive CRIB motif-containing protein 5[more]
AT2G20430.11.4e-1766.67ROP-interactive CRIB motif-containing protein 6[more]
AT1G04450.17.1e-1757.75ROP-interactive CRIB motif-containing protein 3[more]
BLAST of Carg16552 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4IVV0|RIC1_ARATH4.7e-1862.16CRIB domain-containing protein RIC1 OS=Arabidopsis thaliana OX=3702 GN=RIC1 PE=1... [more]
sp|Q1G3K8|RIC7_ARATH1.0e-1749.06CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana OX=3702 GN=RIC7 PE=1... [more]
sp|F4J424|RIC5_ARATH1.8e-1762.69CRIB domain-containing protein RIC5 OS=Arabidopsis thaliana OX=3702 GN=RIC5 PE=1... [more]
sp|Q1PF35|RIC6_ARATH2.6e-1666.67CRIB domain-containing protein RIC6 OS=Arabidopsis thaliana OX=3702 GN=RIC6 PE=1... [more]
sp|F4I5N6|RIC3_ARATH1.3e-1557.75CRIB domain-containing protein RIC3 OS=Arabidopsis thaliana OX=3702 GN=RIC3 PE=1... [more]
BLAST of Carg16552 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWI0|A0A1S3AWI0_CUCME3.6e-3982.03CRIB domain-containing protein RIC7-like OS=Cucumis melo OX=3656 GN=LOC103483575... [more]
tr|A0A0A0L9S1|A0A0A0L9S1_CUCSA9.8e-3776.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134890 PE=4 SV=1[more]
tr|A0A251QSB5|A0A251QSB5_PRUPE2.6e-2152.88Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G041800 PE=4 SV=1[more]
tr|A0A2I4ENG4|A0A2I4ENG4_9ROSI1.7e-2063.16CRIB domain-containing protein RIC7 OS=Juglans regia OX=51240 GN=LOC108991211 PE... [more]
tr|A0A2P6QR63|A0A2P6QR63_ROSCH2.2e-2061.05Putative CRIB domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_C... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036936CRIB_dom_sf
IPR000095CRIB_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16552-RACarg16552-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000095CRIB domainSMARTSM00285PBD_5coord: 28..62
e-value: 1.1E-7
score: 41.6
IPR000095CRIB domainPFAMPF00786PBDcoord: 27..62
e-value: 1.8E-10
score: 40.9
IPR000095CRIB domainPROSITEPS50108CRIBcoord: 28..41
score: 8.731
IPR000095CRIB domainCDDcd00132CRIBcoord: 26..62
e-value: 4.98366E-8
score: 46.2777
IPR036936CRIB domain superfamilyGENE3DG3DSA:3.90.810.10coord: 21..70
e-value: 8.9E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..195
NoneNo IPR availablePANTHERPTHR23177:SF53CRIB DOMAIN-CONTAINING PROTEIN RIC1-RELATEDcoord: 2..180
NoneNo IPR availablePANTHERPTHR23177MKIAA1688 PROTEINcoord: 2..180

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16552Cla005965Watermelon (97103) v1carwmB0222
Carg16552Cla021507Watermelon (97103) v1carwmB0223
Carg16552Csa3G134890Cucumber (Chinese Long) v2carcuB0262
Carg16552MELO3C006408Melon (DHL92) v3.5.1carmeB0240
Carg16552ClCG07G001190Watermelon (Charleston Gray)carwcgB0228
Carg16552ClCG05G004220Watermelon (Charleston Gray)carwcgB0226
Carg16552CSPI03G11800Wild cucumber (PI 183967)carcpiB0266
Carg16552Cucsa.255540Cucumber (Gy14) v1carcgyB0276
Carg16552CmaCh06G013130Cucurbita maxima (Rimu)carcmaB0329
Carg16552CmaCh02G017340Cucurbita maxima (Rimu)carcmaB0328
Carg16552CmaCh19G001020Cucurbita maxima (Rimu)carcmaB0327
Carg16552CmaCh14G018220Cucurbita maxima (Rimu)carcmaB0325
Carg16552CmoCh06G013210Cucurbita moschata (Rifu)carcmoB0332
Carg16552CmoCh14G018620Cucurbita moschata (Rifu)carcmoB0328
Carg16552CmoCh19G001140Cucurbita moschata (Rifu)carcmoB0330
Carg16552CmoCh02G017780Cucurbita moschata (Rifu)carcmoB0331
Carg16552Lsi05G017450Bottle gourd (USVL1VR-Ls)carlsiB210
Carg16552Cp4.1LG03g09830Cucurbita pepo (Zucchini)carcpeB0334
Carg16552Cp4.1LG08g03380Cucurbita pepo (Zucchini)carcpeB0336
Carg16552CsGy3G011920Cucumber (Gy14) v2carcgybB0251
Carg16552MELO3C006408.2Melon (DHL92) v3.6.1carmedB0248
Carg16552CsaV3_3G011950Cucumber (Chinese Long) v3carcucB0266
Carg16552Cla97C05G084930Watermelon (97103) v2carwmbB0236
Carg16552Cla97C07G129460Watermelon (97103) v2carwmbB0238
Carg16552Bhi01G000510Wax gourdcarwgoB0292
Carg16552Bhi05G000138Wax gourdcarwgoB0297
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16552Carg16888Silver-seed gourdcarcarB272
Carg16552Carg06230Silver-seed gourdcarcarB274
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16552Silver-seed gourdcarcarB259
Carg16552Silver-seed gourdcarcarB273
Carg16552Silver-seed gourdcarcarB275
Carg16552Cucumber (Gy14) v2carcgybB0250
Carg16552Cucumber (Gy14) v1carcgyB0277
Carg16552Cucurbita maxima (Rimu)carcmaB0326
Carg16552Cucurbita maxima (Rimu)carcmaB0330
Carg16552Cucurbita moschata (Rifu)carcmoB0329
Carg16552Cucurbita moschata (Rifu)carcmoB0333
Carg16552Cucurbita pepo (Zucchini)carcpeB0331
Carg16552Cucurbita pepo (Zucchini)carcpeB0332
Carg16552Cucurbita pepo (Zucchini)carcpeB0333
Carg16552Cucurbita pepo (Zucchini)carcpeB0335
Carg16552Wild cucumber (PI 183967)carcpiB0265
Carg16552Cucumber (Chinese Long) v2carcuB0261
Carg16552Cucumber (Chinese Long) v3carcucB0265
Carg16552Bottle gourd (USVL1VR-Ls)carlsiB209
Carg16552Bottle gourd (USVL1VR-Ls)carlsiB211
Carg16552Melon (DHL92) v3.5.1carmeB0238
Carg16552Melon (DHL92) v3.6.1carmedB0246
Carg16552Watermelon (Charleston Gray)carwcgB0227
Carg16552Watermelon (97103) v1carwmB0224
Carg16552Watermelon (97103) v2carwmbB0237
Carg16552Wax gourdcarwgoB0290