Carg16472 (gene) Silver-seed gourd

Overview
NameCarg16472
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_130 : 807487 .. 808062 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAAGGTATGGGACGAGGAAGACTCCATGATAATATCATGGCTATGGAACTCTTCTGAGTCATCCATCAATAATACATGAATGTTTTTACAGAACACATAAACTATATGGGACTTCATTCATCGCACTTACTCCAAGGCTAGACATGTTACACAGATCTATGAAATCAAAATAATGACTAGAGCCATGAAAGCAAGGAAGAAAAACTATTATTGAATATGTCATAGTCTTGCAAACATTGTGGCAAGAACTTCAGGTATTCAAGATGAGTTGCATTGCATGCATAGTACTGAAGAAATTTATAGAAGCAGATCATGTCTTGTCTATGATTTTTGGTAGGTCCAACCATGAGTTTGACCAAGTTCGTTCACAAAACATCGAAAAAGGGGAAACACCGTCCCTAGAAGTAACAATTTGCTTTTTTCAAGCAGAAGAGAGTAGATGGTGCCTTATTCTTGACAAACAACCCAGTTTAGATGCATTGGCTTTAGCTGTAGAGAAAGATAGAAACAACAGAAGAGACAACCATGACAAAAAAGACTATTCCTATGACACAAGAGTTATATTGTGA

mRNA sequence

ATGGATTTAAGGTCCAACCATGAGTTTGACCAAGTTCGTTCACAAAACATCGAAAAAGGGGAAACACCGTCCCTAGAAGTAACAATTTGCTTTTTTCAAGCAGAAGAGAGTAGATGGTGCCTTATTCTTGACAAACAACCCAGTTTAGATGCATTGGCTTTAGCTGTAGAGAAAGATAGAAACAACAGAAGAGACAACCATGACAAAAAAGACTATTCCTATGACACAAGAGTTATATTGTGA

Coding sequence (CDS)

ATGGATTTAAGGTCCAACCATGAGTTTGACCAAGTTCGTTCACAAAACATCGAAAAAGGGGAAACACCGTCCCTAGAAGTAACAATTTGCTTTTTTCAAGCAGAAGAGAGTAGATGGTGCCTTATTCTTGACAAACAACCCAGTTTAGATGCATTGGCTTTAGCTGTAGAGAAAGATAGAAACAACAGAAGAGACAACCATGACAAAAAAGACTATTCCTATGACACAAGAGTTATATTGTGA

Protein sequence

MDLRSNHEFDQVRSQNIEKGETPSLEVTICFFQAEESRWCLILDKQPSLDALALAVEKDRNNRRDNHDKKDYSYDTRVIL
Homology
[Close]
BLAST of Carg16472 vs. NCBI nr
Match: EXC26750.1 (hypothetical protein L484_023366 [Morus notabilis])

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 6   NHEFDQVRSQNIEKGETPSLEVTICFFQAEESRWCLILDKQPSLDALALAV--------- 65
           N EFD VR Q I K ETPSLE  I   +AEESR  L+L+KQP+ D  A            
Sbjct: 189 NPEFDLVRVQIIGKEETPSLEEAISLIRAEESRRSLMLEKQPTSDGSAFMTKTETQEKGK 248

Query: 66  -EKDRNNRRDNH--DKKD 72
            E  RN+ +DN   D KD
Sbjct: 249 NEVSRNSGKDNQWKDNKD 266

[Close]
BLAST of Carg16472 vs. TrEMBL
Match: tr|W9SDG8|W9SDG8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023366 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-04
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 6   NHEFDQVRSQNIEKGETPSLEVTICFFQAEESRWCLILDKQPSLDALALAV--------- 65
           N EFD VR Q I K ETPSLE  I   +AEESR  L+L+KQP+ D  A            
Sbjct: 189 NPEFDLVRVQIIGKEETPSLEEAISLIRAEESRRSLMLEKQPTSDGSAFMTKTETQEKGK 248

Query: 66  -EKDRNNRRDNH--DKKD 72
            E  RN+ +DN   D KD
Sbjct: 249 NEVSRNSGKDNQWKDNKD 266

The following BLAST results are available for this feature:
BLAST of Carg16472 vs. NCBI nr
Match NameE-valueIdentityDescription
EXC26750.13.8e-0446.15hypothetical protein L484_023366 [Morus notabilis][more]
BLAST of Carg16472 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16472 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16472 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W9SDG8|W9SDG8_9ROSA2.5e-0446.15Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_023366 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16472-RACarg16472-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..80