Carg16282 (gene) Silver-seed gourd

Overview
NameCarg16282
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein-tyrosine-phosphatase PTP1-like isoform X2
LocationCucurbita_argyrosperma_scaffold_077 : 508189 .. 509189 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGTGGAACCCTAAATCTATTGTTAGTTACTGGTAAATTACTTTCTACCATGACAAAGTCTGTAGGAACGGAAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTACCAGTGTTTAGTGACGATCCTAATGCAATCGATCCTATGTTATAATCTTCATGCTCTGTTGTCTCATTGTGAATTCAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATGTATTAACCCTGTAAGTTCAAGTACCATTCAAGCCTCTGCGCTAAAATTTTTGTTTTACTGAATTTTTTATTTGAAAACTAAAAGTTTTTCATTATTAGTTAGTCCAATTTGATAGCGGAATTGTTGTATGAATATTTTCAGTTGATGAGACTAGAGGCGTACTTGACTCTTGTAAGGATTACAGACCTTCTGCATGGGGTTATATCAATGCAAGCTTTATTTCCGTAAGTGCAACAATTGATGTGCTTCTACTTAGATAATATTTCAGTACAAGTTCTCTTTTGACTTTCCTCTCCATTGTCTATTTGAAGATTAGTTATTACCACACAAGGTCCATTACCACACACCTTATGAGGATTTCTGGATGCGATTTCTCGTGTGGCTCCTCGGGGCTTGTGTTTATTTATTTGCTGTTCTTGAGAAGTTCTTGGCTGTTCAACGCACCAATGTTTCATATGAATTTTGAATTGTACATTGTTGTATCGATAGTGCTACTGTTTGGGTGTGACGACTTGGAGCTTCTTTCTGCAGAAGAGCTACATACACCAAATTCACTTCTTGTTATTTTTAAT

mRNA sequence

ATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATTTGATGAGACTAGAGGCGTACTTGACTCTTGTAAGGATTACAGACCTTCTGCATGGGGTTATATCAATGCAAGCTTTATTTCCGTAAGTGCAACAATTGATGTGCTTCTACTTAGATAATATTTCAGTACAAGTTCTCTTTTGACTTTCCTCTCCATTGTCTATTTGAAGATTAGTTATTACCACACAAGGTCCATTACCACACACCTTATGAGGATTTCTGGATGCGATTTCTCGTGTGGCTCCTCGGGGCTTGTGTTTATTTATTTGCTGTTCTTGAGAAGTTCTTGGCTGTTCAACGCACCAATGTTTCATATGAATTTTGAATTGTACATTGTTGTATCGATAGTGCTACTGTTTGGGTGTGACGACTTGGAGCTTCTTTCTGCAGAAGAGCTACATACACCAAATTCACTTCTTGTTATTTTTAAT

Coding sequence (CDS)

ATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATTTGATGAGACTAGAGGCGTACTTGACTCTTGTAAGGATTACAGACCTTCTGCATGGGGTTATATCAATGCAAGCTTTATTTCCGTAA

Protein sequence

MTKSVGTGSKSTILMQSIWTLTSNSLAFLYQVSRIQLLPEFLKAQRIAASDMRRNCSVALGNVNISKNRYTDLMRLEAYLTLVRITDLLHGVISMQALFP
Homology
[Close]
BLAST of Carg16282 vs. NCBI nr
Match: XP_022932558.1 (protein-tyrosine-phosphatase PTP1 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+AQRI ASDM++NCSVAL NVNISKNRYTD++
Sbjct: 121 LQAQRITASDMKKNCSVALDNVNISKNRYTDVL 153

[Close]
BLAST of Carg16282 vs. NCBI nr
Match: XP_022976925.1 (protein-tyrosine-phosphatase PTP1 [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+AQRI ASDM++NCSVAL NVNISKNRYTD++
Sbjct: 121 LQAQRITASDMKKNCSVALDNVNISKNRYTDVL 153

[Close]
BLAST of Carg16282 vs. NCBI nr
Match: XP_023535288.1 (protein-tyrosine-phosphatase PTP1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+AQRI ASDM++NCSVAL NVNISKNRYTD++
Sbjct: 123 LQAQRITASDMKKNCSVALDNVNISKNRYTDVL 155

[Close]
BLAST of Carg16282 vs. TrEMBL
Match: tr|A0A1S3C081|A0A1S3C081_CUCME (protein-tyrosine-phosphatase PTP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494974 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 42 LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
          L+A+RI ASDMRR+CSVAL NVN++KNRY D++
Sbjct: 62 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 94

[Close]
BLAST of Carg16282 vs. TrEMBL
Match: tr|A0A1S4E3A2|A0A1S4E3A2_CUCME (protein-tyrosine-phosphatase PTP1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500065 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+A+RI ASDMRR+CSVAL NVN++KNRY D++
Sbjct: 117 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 149

[Close]
BLAST of Carg16282 vs. TrEMBL
Match: tr|A0A1S4E049|A0A1S4E049_CUCME (protein-tyrosine-phosphatase PTP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494974 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 42 LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
          L+A+RI ASDMRR+CSVAL NVN++KNRY D++
Sbjct: 62 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 94

[Close]
BLAST of Carg16282 vs. TrEMBL
Match: tr|A0A1S4E3A1|A0A1S4E3A1_CUCME (protein-tyrosine-phosphatase PTP1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500065 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+A+RI ASDMRR+CSVAL NVN++KNRY D++
Sbjct: 117 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 149

[Close]
BLAST of Carg16282 vs. TrEMBL
Match: tr|A0A1S3CEJ3|A0A1S3CEJ3_CUCME (protein-tyrosine-phosphatase PTP1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103500065 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.9e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 42  LKAQRIAASDMRRNCSVALGNVNISKNRYTDLM 75
           L+A+RI ASDMRR+CSVAL NVN++KNRY D++
Sbjct: 117 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 149

The following BLAST results are available for this feature:
BLAST of Carg16282 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932558.13.3e-0578.79protein-tyrosine-phosphatase PTP1 [Cucurbita moschata][more]
XP_022976925.13.3e-0578.79protein-tyrosine-phosphatase PTP1 [Cucurbita maxima][more]
XP_023535288.13.3e-0578.79protein-tyrosine-phosphatase PTP1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg16282 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg16282 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg16282 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C081|A0A1S3C081_CUCME6.9e-0469.70protein-tyrosine-phosphatase PTP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A1S4E3A2|A0A1S4E3A2_CUCME6.9e-0469.70protein-tyrosine-phosphatase PTP1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S4E049|A0A1S4E049_CUCME6.9e-0469.70protein-tyrosine-phosphatase PTP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
tr|A0A1S4E3A1|A0A1S4E3A1_CUCME6.9e-0469.70protein-tyrosine-phosphatase PTP1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3CEJ3|A0A1S3CEJ3_CUCME6.9e-0469.70protein-tyrosine-phosphatase PTP1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16282-RACarg16282-RAmRNA