Carg16281 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGTAAATGTTATCGGTGAATCTATTAGTTCTCATATGTGCTGCTTATCTGACCTCACGTATGGTTCCTTCGTGAATGTTATTATCATTTAGTTGAATACTGCAGAAAGACGGGGTGACAGGGAGGATGCCTATATGCTATGAAGACGTTGTTGTATTTTACGCAATTTCAAAGTCTCCAATTATATAATTCTTCCGAAGTTTTGCAGGTTTTTTGATGTAAGAATTGGCTAGCCTGACCGTGAATGCTATCAGTGAATCTATTAGTTCTCATATGTGCCGCTTATCTGACCTTACATTATGGTTCCTTTGTGAATGTTATTGCCATTTAGTTGAATATTGCAGAAAGACGTGGTGATTGGGAAGATGCCTATTGGCGAGCCTTTTGTGACCGTGAATGCTGTCAGTGAATCTATTAGTTTTCATATGTGCCGCTTATCTGACCTTACGTATGGTTCCTTCGTGAATGTTATTACCATTTAGTTGAATATTGTAGAAAGACGTGGTGATTGGGAGGATGGCTATATGCTATAAAGACATTGCTGTGTTTTACGCGATTTCAATATTTCCAATTGTATAATTCTTTCGGAGTTTTGCAGGTTCTTTGATGTAAGAATTAGCAAGCCTTGTCCTCATATGTGCCACTTATCTGACCTTATGTATGGTTCGTTCGTGAATGTTATTACCATTTACCATAAAGTAATATTATCTATTTTTATAATTGCACTTAGCTAACACTGTAAAATTCTCCCGTCCATGTCAGGTTGTTTTGATTCAAGAACAACTTTCGAAAAACAGGATTATCATTGATACTGACAAAAGGGGAAGTGAGTACACTTTTCAAGTCACTATTTCTCTTCCATATAATTATGTCTTCTAGGTTCCTAGTTTATTTATTGTCCTTACATAGGATTAGAAATTGATTCTAATGGGCATTGTTTGAGCTTGTAACTAGATCGTGGATCCATATGGTTTTGGATGCTTTTTTGGTTGGTTTATAGTTGTTTTTATAATAATCTCTTGGTGATGTGAGTAAGTTGTTCAATTAGAGTATTATTGAAGGATGCAAGGTGATGCAACCAAGCATCAAAGGATAAAATCTCCAAGAATTCTCAAAAGAACTTTCATTATGATTCAAAAAGCAAGTTAATCGCAAGAGAGATCAACCTTCTATTCTAGTGGATTGATAGGTTTACCTTGCATATATAATATGTTCCACCTTTATTGTAAAACTGAAGTTCATCAGAGGGCTCTTAATTGGAACCAGTCAACTGTAATCTCACTTTGTTCCACCTTTATTGGACCAATTCCTATGGTTATTTGCAGAATTTGAGAGTGTACATAAAGCTTCCAATCTATCTCGGCATGTCTTTTTTCTGCAAGAACACAGCTAAGAATCTTTATTGCTGGGTTTGTTTAGTGTGAAAATACCACACATTGTCCTTTGAACTTCCCTGTGGCTCGCCAATGTGACTTATTTATTTGAGCTATCTTAGCAGAACCTTCTGTGGGCTCATTATCTTACTACCCTTTGGCGTTCCATACCTACGATTCGACCCATGGAAAGTAGAGATTATGAATATGCAAGTTATAATGATTGAAGGGCAGTATTGATTTCTTTTTCTGTAACAGGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATATGGGTGCTAAAGGTAATTTTACAAGATACTATAGAATAGGACCTATGAACGGTCGTCAAGGGATCAAATAATATGCAGCCATGCCAGTTCGTGTCTGTATGAATACAATATAATGCTCATTCCTAAGATGCTTTGATTTTCTGTGCAAGTTCTTTTCTTCTGCCCTTTTTGTTTAATGCCCTCCCTGTCCTAAATTTCAAGGATCCTTCAAATTTCTAATGTCTACCATTCAAGAAGTTCAAAATTTTGGGTGATGAAGATAGATTTTCTGGAAGTTCAAAGATGCATTTGTATGGCATTATATTGTTTCCTTGAGCTACTTATATTGATTTTTGAGCTCTCATGTTATGTTACACATATGCAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTTTGGGGTCTCTCGGGAATAATATTGGTAATTTCGCTCCTCTAACACCGAACCATTTATTTTTTTCAATAAGTTATAGGCATTTTTTTGGTTAATTATGTGTGCTAACTGCGAAAAGAAATCAGATAGTATTGTTTGTGTTTTATGCTTCGAATTGTGATATCGTAAGTCTTAACTTAATCTCCTAAGAACGTCCTTAATCATCGATTCGTTCATTTCATTTTCAGGAGCATGTAACTTAAGCCTGATTTGTCGTTGTTGCTTCCCAGTAATAAATGCATTTGTTACAAGCAGCAGAGAGGCAACAAATAGTAAAACAGTTATTAAGATGGAAAATGAGATGATCTATGTCCAGCATAATATATTTACCACACCAAAGGTTTGAATATTTTCTTTATTTTCAAATTGCTTTGTGATCTGCAGCAGAAATACCCTCGTTGCATTTTATACTAACTCCTTTTAAATTATATTTAAATTATATTATAATAAAGTTAGTGGACCAAGAGCATTACAACCATCAATCATACAAAAATTTATCTCAATAATTATTACTGCTACTTTGGATCTTGTTCTTAATGTCTAATTATTAAGAACAATGTCCACAATAATTTCTTTGGTATTGTACAAAATGTTTCTGATTTATGCGTGATATTTATTGCTGTAGTGGGTGGGGTATGCTTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAATTTCTATGGTATTGCTCACAACCGTTACTTCTTTAATCGCATTTGGGCCCTCTTTTTTTCATAGCATATATTCTCCCTTGTGTGAACTGCTGAATCATGCTTGACAATAGGGTTGAATAGAAGAGTCAGGTTATTCCCATAATTATCTTCTTTAGGAACAATTGCTCGAGATGAAAGAAGATGTTGGTTGTTATCACTCAGTTGACACGAAACAATTGTCAAATAAAAAAGAATTGTTCAAGATCTTGTTGGAGTTAAATAACAATTGTTCGAGATGGAAGAGATTCAATATGAAGGATGGATGATGACATGTACCGGTAAGAAGTTACCCATTTCAGAGTTGATGAGTAGATCTCATTTCCCTAGTTTTTATATTTTCATTGTTTATAACGAGTTTTTACTGTCCATGAGCTTACCTTCCAAAAGCCTTAACATGCTGATGTTTGTTCAAGCTCGAGTTACTGTTGACTACATGCTCACAACTTCTTTATTCGACACTTAAGAATTTCATTAACATGGTTAAGTTAAGGGCATGACTTTAATATCATGTTAGGAATCACGACTCTCCATAATGGTATGATAGTCCACTTTGAATATAAGCTCTCATGCTTTTATTTTTTGTTTCCCCAAAAGTCCTCGTACCAATGGAGATATATTCATTACTTATAAATTCATGATCATCTCCTTAATTAGCCAACGTGGGACCCTTCCAACCATCTTCAACCATTATAGATCTAAAGCTAATAATGGGAGCTGAATAGTTTTACAAAGACCCCATCAGGATTCTTAGCAAAGCCTTAGCGGATTGCTCTGTTCTTAGAGAACTAAAGGTATGAGAAGAAGAAATTTGATATTGTAAAGAGAGTGAATCACCATAATACAACCCCAGAGCCAATGCTGATAGAAATTAGTATATCCACCATCGAGTATGAGGATAATAAGCATCTCCGCCAACATCCCATCAAGCACATCTTCAACTTGTAAAAAATCTGTTAGTGGTGGGCTTGGGCCGTTACAAATGGTATTAGAGCCAGATAAGGGGTATGTACCAGCGAGGAGGCTGAGCCAGCCTCGAAAGGGCAGATGGGACCCAAAGTGGTGTGCCAACAAGGATGCTGGGCCCCGAAAAGGGGCAGATTGGGGGGTCCCACATCAATTGGAGAAGGAAATGAGTGTCAGCAAGAACGCTGGACCCCGAAGGGGTTGAATTGGGAAAGGAGCCATTTTGTCTATTGAATTCGTTTAAGTGTCGGCTGGCCCAGTAATCAGAACCATTTATTACTTGAAGCTTACCATAGGAGAGCCTCTAATTCTTTAACTTCTAAAATGCATGAAGATCTTTCGTACATAAATTAGACAAATATTGATTTCTCTGGATTTCGTGTGTTCATGTCAACATATTTCTTGCAACTTTTTCCTTCTGCAAGTTTAAAAGAATATTAATCTTATTTACAAGAAAGGCTAAAGGTGTTCTATTTGAAGATGATGGCTATGGATACGGTATCAGTTTAGGTGCATACCTAACCTATCAACATATTATGTGGCAGGGCTAGAATCTTCAGTTCAAGCTTCTAGGACTGAAGGATCATGAGCTAGACCAAGACGGTGTCTGCATAGGCAAAGGTACGTTTTTGTTTGCATTTTCTTTTATTTTCGAAGCTCTCTACTGCATATTTTGAGTATCTATACCTCAAGATTCATACTTGGGGCACAGATGAAGAAGGTATTGCTTCTCCTTGCTTGGTCTCGTCTGACTCATGTTTCAACGAATAAAAACAAAAATGAAATATACAAACTTTAATTAATAAATGAAACCAAGGATATACAAAACTTATCTAAATAGTCACGACGGTCTGCCTGCCAGCGAGTGCTAGCGAGGATGTTGGGCCTTGAAAGGGGGTGTATTGTGAGATC ATGACTAAAGACGTGGTGATTGGGAAGATGCCTATTGGCGAGCCTTTTGTGACCGTGAATGCTGTCAGTGAATCTATTAGTTTTCATATGTGCCGCTTATCTGACCTTACGTTCTTTGATGTAAGAATTAGCAAGCCTTGTCCTCATATGTGCCACTTATCTGACCTTATGTATGGTTCGTTCGTGAATGTTATTACCATTTACCATAAAAATTTGAGAGTGTACATAAAGCTTCCAATCTATCTCGGCATGTCTTTTTTCTGCAAGAACACAGCTAAGAATCTTTATTGCTGGGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATATGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTTTGGGTGGGTGGGGTATGCTTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAATTTCTATGGTATTGCTCACAACCGTTACTTCTTTAATCGCATTTGGGCCCTCTTTTTTTCATAGCATATATTCTCCCTTGTGTGAACTGCTGAATCATGCTTGACAATAGGGTTGAATAGAAGAGTCAGGTTATTCCCATAATTATCTTCTTTAGGAACAATTGCTCGAGATGAAAGAAGATGTTGGTTGTTATCACTCAGTTGACACGAAACAATTGTCAAATAAAAAAGAATTGTTCAAGATCTTGTTGGAGTTAAATAACAATTGTTCGAGATGGAAGAGATTCAATATGAAGGATGGATGATGACATGTACCGGGCTAGAATCTTCAGTTCAAGCTTCTAGGACTGAAGGATCATGAGCTAGACCAAGACGGTGTCTGCATAGGCAAAGCGAGTGCTAGCGAGGATGTTGGGCCTTGAAAGGGGGTGTATTGTGAGATC ATGACTAAAGACGTGGTGATTGGGAAGATGCCTATTGGCGAGCCTTTTGTGACCGTGAATGCTGTCAGTGAATCTATTAGTTTTCATATGTGCCGCTTATCTGACCTTACGTTCTTTGATGTAAGAATTAGCAAGCCTTGTCCTCATATGTGCCACTTATCTGACCTTATGTATGGTTCGTTCGTGAATGTTATTACCATTTACCATAAAAATTTGAGAGTGTACATAAAGCTTCCAATCTATCTCGGCATGTCTTTTTTCTGCAAGAACACAGCTAAGAATCTTTATTGCTGGGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATATGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTTTGGGTGGGTGGGGTATGCTTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAA MTKDVVIGKMPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVGYALSCDTPEGEACELVKNLALMTRVTTKAH
BLAST of Carg16281 vs. NCBI nr
Match: XP_023540536.1 (uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540537.1 uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540538.1 uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540539.1 uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540540.1 uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 195.7 bits (496), Expect = 1.3e-46 Identity = 113/175 (64.57%), Postives = 124/175 (70.86%), Query Frame = 0
BLAST of Carg16281 vs. NCBI nr
Match: XP_023540543.1 (uncharacterized protein LOC111800873 isoform X4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30 Identity = 83/139 (59.71%), Postives = 94/139 (67.63%), Query Frame = 0
BLAST of Carg16281 vs. NCBI nr
Match: XP_023540542.1 (uncharacterized protein LOC111800873 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.2 bits (352), Expect = 6.7e-30 Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 0
BLAST of Carg16281 vs. NCBI nr
Match: XP_023540541.1 (uncharacterized protein LOC111800873 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140.2 bits (352), Expect = 6.7e-30 Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 0
BLAST of Carg16281 vs. TAIR10
Match: AT5G45140.1 (nuclear RNA polymerase C2) HSP 1 Score: 46.6 bits (109), Expect = 1.8e-05 Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 0
BLAST of Carg16281 vs. TAIR10
Match: AT1G74320.1 (Protein kinase superfamily protein) HSP 1 Score: 44.3 bits (103), Expect = 9.1e-05 Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 0
BLAST of Carg16281 vs. Swiss-Prot
Match: sp|F4KD38|NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPC2 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.3e-04 Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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