Carg16221 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16221
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TatD related DNase
Location	Cucurbita_argyrosperma_scaffold_077 : 120576 .. 122506 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGGGTATAAATAATCAACAAATGTCATATTTATTGGGTTGGAGGTCATCTCCATCTCTCCTTATCAATTCGAACAAATCTGAAACAACTTCAATGAAAGCGCGTCTTTCTAGTTCTTCCCTCGCTTTCCTCCGCCATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCAATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGGTGAGGCCTCCATTTCTTTCGATTGTTTACACTGTCCTTCTGCTTTTCTGGAATGAGATTATTGTGTTTAAATGCAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTGTGAGTCTTTCTTTATGTTGTTTTTTTTAATCTCTATTAGCTTGCGATTGTGAAGGATTATCCCCCATTTCCGGGTTCTTGATCTGTTGAGCTCTATTGGTAGATTGTGAATGTTCGTTCTGTGTTGATGTATTAGTACCAATCCAACTTATGGTGGTTGATAAAATCTATCATCATTCAGATTTAATTTCAATTTTCAATCTCTTTGAATACTTCTTTGAACTCTTCCACGATTAGGTAAGTTTGAGATCCCACTTCGGTTGGGGAGGAGAAGGAAACATTCTTTATATGTGTGTGGAAATATCTTCGATATGAACCAAGAGATATCAATTATAAATTTTGGGTGGATCATAATTTAAAGTAATTTAGAATTGATGTTTCTTTGTGAAAGTTACAACTCTTGAAAAGCCTCAGGGAAGGTTAAGAGTTTTCATTTTGAGGCTATATAATGTCATTATGTTATCTTTCTAAGATGGACTTAGAAAATATAGTAAAACGAGCATTTGTGCTCTCTTTAGCCAATGGCTAAGTTCCTCTATGCAGTTTAGGTTGCACGTAAAATCATTCAAGTTCGACATGATGAATTTTGCTTATGGAGTGATTCGAATCTCAAACAGCTGTTCCTGCCTTAAGATATTTTTTATCAACAAGAATCATTCAAGCTAGACATGATCAATCTTGCTTGTAGAGTGATTCGAATCTCAAACAAGTGTTTTTGCTTTGAGATATTCAATCAACAAGATGATCTGAATCTTACTCTCCTAATAGTGATTCCATATCATTTGGTATCGGAGCTTTTCTCCTTAGAAGTGGGTTTGAGCCATGAGAGTAAGCTTAGAATTCTTTTTAGTACAAGAAATTCGAAGGGATAAAAAAAGCATGGATTATGTTACAAAGATAATGTAGTTTATTACATAAACCAAAAGCAAACATCACAGTTATCTTTATACAAACCCACAAGCCAAGCATCTTTGTTCAGTAAAAATTGCTTATGAATTTCTGAATTTAAACAACCAAACACTAGAGTTCATAGACATTCTTCTTATTCTACATTGAGGGTCACATACAGAGTGCAGAATTCATACTTTTGATGCTCTTATTCTTCAAACAAACCCTTTTGTTTACTGCAATAACTTCATACTGGATATCTGTTTGGATGAATCTTTTGTTTCTCTCAGCTACCTCTCATTATGAGATGCAGAACAGAGAGATAAGAATCATCATATAGAGCTAATGATTAGAGCCAAAAATGACTTGCCATTGCAACCAAACGCGGGGACTATCCTCTTCGCGAAGCCTGAAACAATTGCCATCAACGACGACATTGAAGCAAGCTGGATTTGGTCGCAACAAAGACAGGGTCTTGGTGCAGTGACTTGCACCAAGAACCCATTGCCTTACCGGTCAAAAACAAAGGTCACAGCAGTTATCAGCTGCTGCAACCCATTTGGGGAGAACCATGCCATGCCCTCCTCCATCAATGATCTCTGCCAGTGA

mRNA sequence

TTTAGGGTATAAATAATCAACAAATGTCATATTTATTGGGTTGGAGGTCATCTCCATCTCTCCTTATCAATTCGAACAAATCTGAAACAACTTCAATGAAAGCGCGTCTTTCTAGTTCTTCCCTCGCTTTCCTCCGCCATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCAATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTCTTGCGATTGTGAAGGATTATCCCCCATTTCCGGAACAGAGAGATAAGAATCATCATATAGAGCTAATGATTAGAGCCAAAAATGACTTGCCATTGCAACCAAACGCGGGGACTATCCTCTTCGCGAAGCCTGAAACAATTGCCATCAACGACGACATTGAAGCAAGCTGGATTTGGTCGCAACAAAGACAGGGTCTTGGTGCAGTGACTTGCACCAAGAACCCATTGCCTTACCGGTCAAAAACAAAGGTCACAGCAGTTATCAGCTGCTGCAACCCATTTGGGGAGAACCATGCCATGCCCTCCTCCATCAATGATCTCTGCCAGTGA

Coding sequence (CDS)

ATGGGAACACTGCGAATCATACCTAACCCACTTTCTTACTCAATCCACCTGCAATTAACTCCTTCCGACCTTTCTATCAATCCCTTATCGCACATATCGCGCTCAATTTTACAGATGGTATGTTTAATTAAAGGAATCTTCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTATATTAAGCAGGGCTTGGAGTGCTGGGGTTGAGCGAATCGTTCTTGCGATTGTGAAGGATTATCCCCCATTTCCGGAACAGAGAGATAAGAATCATCATATAGAGCTAATGATTAGAGCCAAAAATGACTTGCCATTGCAACCAAACGCGGGGACTATCCTCTTCGCGAAGCCTGAAACAATTGCCATCAACGACGACATTGAAGCAAGCTGGATTTGGTCGCAACAAAGACAGGGTCTTGGTGCAGTGACTTGCACCAAGAACCCATTGCCTTACCGGTCAAAAACAAAGGTCACAGCAGTTATCAGCTGCTGCAACCCATTTGGGGAGAACCATGCCATGCCCTCCTCCATCAATGATCTCTGCCAGTGA

Protein sequence

MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAILSRAWSAGVERIVLAIVKDYPPFPEQRDKNHHIELMIRAKNDLPLQPNAGTILFAKPETIAINDDIEASWIWSQQRQGLGAVTCTKNPLPYRSKTKVTAVISCCNPFGENHAMPSSINDLCQ

Homology

[Close]

BLAST of Carg16221 vs. NCBI nr
Match: XP_022936731.1 (uncharacterized protein LOC111443234 isoform X1 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIVLA 76
          LSRAW AGVERIV+A
Sbjct: 61 LSRAWIAGVERIVVA 75

[Close]

BLAST of Carg16221 vs. NCBI nr
Match: XP_022936739.1 (uncharacterized protein LOC111443234 isoform X2 [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHISRSILQMVCLIKGIFHGKHYHAAHIAAI 60
          MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHI RSILQMVCLIKGI HGKHYHAAHIAA+
Sbjct: 1  MGTLRIIPNPLSYSIHLQLTPSDLSINPLSHILRSILQMVCLIKGICHGKHYHAAHIAAV 60

Query: 61 LSRAWSAGVERIVLAI 77
          LSRAW AGVERIV+++
Sbjct: 61 LSRAWIAGVERIVVSL 76

[Close]

BLAST of Carg16221 vs. NCBI nr
Match: ONM27780.1 (TatD related DNase [Zea mays] >ONM27781.1 TatD related DNase [Zea mays] >ONM27786.1 TatD related DNase [Zea mays])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 75
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

[Close]

BLAST of Carg16221 vs. NCBI nr
Match: ONM27784.1 (TatD related DNase [Zea mays])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 75
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

[Close]

BLAST of Carg16221 vs. NCBI nr
Match: XP_022151378.1 (putative deoxyribonuclease TATDN1 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIVL 75
          + KGI+HGK YHAA IAA+LSRAWSAGVERI++
Sbjct: 17 MFKGIYHGKQYHAADIAAVLSRAWSAGVERIIV 49

[Close]

BLAST of Carg16221 vs. TAIR10
Match: AT3G52390.2 (TatD related DNase)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIVL 75
          + KG++HGK+ H   IA +L+RAWSAGV+RI++
Sbjct: 20 MFKGLYHGKNCHVPDIATVLNRAWSAGVDRIIV 52

[Close]

BLAST of Carg16221 vs. TrEMBL
Match: tr|A0A1D6F9F5|A0A1D6F9F5_MAIZE (TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 75
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

[Close]

BLAST of Carg16221 vs. TrEMBL
Match: tr|A0A1D6F9F8|A0A1D6F9F8_MAIZE (TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 17  LQLTPSDLSINPLSHISRSILQMVC-------LIKGIFHGKHYHAAHIAAILSRAWSAGV 75
           L L P  LS++P S ++ + ++ VC       + KGI+HGK  HAA I A+L+RAW+AGV
Sbjct: 129 LLLVPLSLSLSPSSRVACAAVRAVCCYCLEDGMFKGIYHGKQCHAADIPAVLARAWAAGV 188

[Close]

BLAST of Carg16221 vs. TrEMBL
Match: tr|A0A0A0LET6|A0A0A0LET6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782690 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIVL 75
          + KGI+HGK YHAA +AA+LSRAWSAGV+RI++
Sbjct: 17 MFKGIYHGKQYHAADLAAVLSRAWSAGVQRIIV 49

[Close]

BLAST of Carg16221 vs. TrEMBL
Match: tr|A0A1S3B6V7|A0A1S3B6V7_CUCME (putative deoxyribonuclease TATDN1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486689 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIVL 75
          + +GI+HGK YHAA IAA+LSRAWSAGV+RI++
Sbjct: 17 MFRGIYHGKQYHAADIAAVLSRAWSAGVQRIIV 49

[Close]

BLAST of Carg16221 vs. TrEMBL
Match: tr|A0A1S3B6Y3|A0A1S3B6Y3_CUCME (putative deoxyribonuclease TATDN1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486689 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 42 LIKGIFHGKHYHAAHIAAILSRAWSAGVERIVL 75
          + +GI+HGK YHAA IAA+LSRAWSAGV+RI++
Sbjct: 1  MFRGIYHGKQYHAADIAAVLSRAWSAGVQRIIV 33

The following BLAST results are available for this feature:

BLAST of Carg16221 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936731.1	4.1e-30	93.33	uncharacterized protein LOC111443234 isoform X1 [Cucurbita moschata]	[more]
XP_022936739.1	5.3e-30	90.79	uncharacterized protein LOC111443234 isoform X2 [Cucurbita moschata]	[more]
ONM27780.1	2.0e-05	44.62	TatD related DNase [Zea mays] >ONM27781.1 TatD related DNase [Zea mays] >ONM2778...	[more]
ONM27784.1	2.0e-05	44.62	TatD related DNase [Zea mays]	[more]
XP_022151378.1	3.5e-05	75.76	putative deoxyribonuclease TATDN1 [Momordica charantia]	[more]

BLAST of Carg16221 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52390.2	1.5e-05	54.55	TatD related DNase	[more]

BLAST of Carg16221 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16221 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1D6F9F5\|A0A1D6F9F5_MAIZE	1.4e-05	44.62	TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1	[more]
tr\|A0A1D6F9F8\|A0A1D6F9F8_MAIZE	1.4e-05	44.62	TatD related DNase OS=Zea mays OX=4577 GN=100282974 PE=4 SV=1	[more]
tr\|A0A0A0LET6\|A0A0A0LET6_CUCSA	8.8e-05	69.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782690 PE=4 SV=1	[more]
tr\|A0A1S3B6V7\|A0A1S3B6V7_CUCME	1.1e-04	69.70	putative deoxyribonuclease TATDN1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A1S3B6Y3\|A0A1S3B6Y3_CUCME	1.1e-04	69.70	putative deoxyribonuclease TATDN1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16221-RA	Carg16221-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16221	CmoCh06G005320	Cucurbita moschata (Rifu)	carcmoB0933

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16221	Cucumber (Gy14) v2	carcgybB0678
Carg16221	Silver-seed gourd	carcarB291
Carg16221	Cucumber (Gy14) v2	carcgybB0676
Carg16221	Cucumber (Gy14) v1	carcgyB0758
Carg16221	Cucurbita maxima (Rimu)	carcmaB0955
Carg16221	Cucurbita maxima (Rimu)	carcmaB0957
Carg16221	Cucurbita moschata (Rifu)	carcmoB0931
Carg16221	Cucurbita pepo (Zucchini)	carcpeB0956
Carg16221	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16221	Wild cucumber (PI 183967)	carcpiB0712
Carg16221	Wild cucumber (PI 183967)	carcpiB0714
Carg16221	Cucumber (Chinese Long) v2	carcuB0700
Carg16221	Cucumber (Chinese Long) v2	carcuB0702
Carg16221	Cucumber (Chinese Long) v3	carcucB0714
Carg16221	Cucumber (Chinese Long) v3	carcucB0716
Carg16221	Bottle gourd (USVL1VR-Ls)	carlsiB620
Carg16221	Melon (DHL92) v3.5.1	carmeB0679
Carg16221	Melon (DHL92) v3.5.1	carmeB0680
Carg16221	Melon (DHL92) v3.6.1	carmedB0691
Carg16221	Melon (DHL92) v3.6.1	carmedB0692
Carg16221	Watermelon (Charleston Gray)	carwcgB0656
Carg16221	Watermelon (97103) v1	carwmB0677
Carg16221	Watermelon (97103) v2	carwmbB0706
Carg16221	Watermelon (97103) v2	carwmbB0707
Carg16221	Wax gourd	carwgoB0795
Carg16221	Wax gourd	carwgoB0796
Carg16221	Wax gourd	carwgoB0797