Carg16206 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16206
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NDR1/HIN1-Like protein 3-like
Location	Cucurbita_argyrosperma_scaffold_077 : 36372 .. 36942 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCGTCCTTCAGATAAGAGTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA

mRNA sequence

ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA

Coding sequence (CDS)

ATGTCAAGAACAAAGAAATGCATGATCATATTCTTGATTATCATTTTAGTTTTAGTTCTTCTTTCATTGTTAATCGTCTGGCTCATCACCATGGCTAACAAGATCAAATTCCATGTGATCGACGCCGACCTGACCCAATTCAACTTCACCGACGACAAGCAACTCCTGTTCGACCTGACCGTGAACATGAAAGTCAAAAACCCTAATCGTGCGTTCGGAGTTTTTTTCGATCGCATCGAAGTGACCGTGTTGTATCAAGACATAAAGTTTAGTAACGCGTCACTGTCGCCTTTCTACCAAGACCAAGATGGGTCGAAGCTGCTGAAATTGAAGTTTGATGGTCAGCAATTGATGAACCTCAACGCTGAGCAGCTGGCTGTGTTTGGTCTGGAGAAGCTTGTTGAGACCTTCACCCTTAAATTGGAGCTTCTGAATATTGATCTCATTAAGATCAAACTCAAGCCCAAGGTGCGTTGTGGCCTTAATCTTCCCTTGATTTCTCGTGGAAGAACGTTTCTACGCTTCCAGATTATCGGCTGCCATGTCGCTTATTGA

Protein sequence

MSRTKKCMIIFLIIILVLVLLSLLIVWLITMANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLELLNIDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY

Homology

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BLAST of Carg16206 vs. NCBI nr
Match: XP_023005830.1 (NDR1/HIN1-like protein 3 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 3.2e-67
Identity = 158/189 (83.60%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MSRTKKCMIIFXXXXXXXXXXXXXXXXXITMANKIKFHVIDADLTQFNFTDDKQLLFDLT 60
           MSRTKKCMIIFXXXXXXXXXXXXXXXX ITMANKIKFHVI ADLTQFNFTDD QLLFDLT
Sbjct: 1   MSRTKKCMIIFXXXXXXXXXXXXXXXXLITMANKIKFHVIGADLTQFNFTDDNQLLFDLT 60

Query: 61  VNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNL 120
           VNMKVKNPNRAFGVFFDRIEVT+LYQDIKFSNAS+SPFYQ QDGSKLLKLKFDGQQLMNL
Sbjct: 61  VNMKVKNPNRAFGVFFDRIEVTLLYQDIKFSNASMSPFYQGQDGSKLLKLKFDGQQLMNL 120

Query: 121 NAEQLAVFGLEKLVETFTL-----KLELLNIDLIKIKLKPKVRCGLNLPLISRGRTFLRF 180
           NAEQLAVFGLEKLVE FTL                        CGLNLPLISRGRTFLRF
Sbjct: 121 NAEQLAVFGLEKLVEIFTLXXXXXXXXXXXXXXXXXXXXXXXHCGLNLPLISRGRTFLRF 180

Query: 181 QIIGCHVAY 185
           QIIGCHVAY
Sbjct: 181 QIIGCHVAY 189

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BLAST of Carg16206 vs. NCBI nr
Match: XP_022957840.1 (NDR1/HIN1-like protein 3 [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 160/189 (84.66%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MSRTKKCMIIFXXXXXXXXXXXXXXXXXITMANKIKFHVIDADLTQFNFTDDKQLLFDLT 60
           MSRTKKCMIIFXXXXXXXXXXXXXXXXXITMANKIKFHVIDADLTQFNFTDDKQLLFDLT
Sbjct: 1   MSRTKKCMIIFXXXXXXXXXXXXXXXXXITMANKIKFHVIDADLTQFNFTDDKQLLFDLT 60

Query: 61  VNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNL 120
           VNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQ QDGSKLLKLKFDGQQLMNL
Sbjct: 61  VNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSNASLSPFYQAQDGSKLLKLKFDGQQLMNL 120

Query: 121 NAEQLAVFGLEKLVETF-----TLKLELLNIDLIKIKLKPKVRCGLNLPLISRGRTFLRF 180
           NAEQLAVFGLEKLVETF                            LNLPLISRGRTFLRF
Sbjct: 121 NAEQLAVFGLEKLVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNLPLISRGRTFLRF 180

Query: 181 QIIGCHVAY 185
           QIIGCHVAY
Sbjct: 181 QIIGCHVAY 189

[Close]

BLAST of Carg16206 vs. NCBI nr
Match: XP_008443593.1 (PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 31  MANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKF 90
           M  K+KF V +A LT+FN T+  QLLF L++NM V+NPNR FGVFFD IEV VLYQDIKF
Sbjct: 1   MTRKLKFQVNNAKLTKFNLTNGSQLLFQLSLNMMVQNPNRGFGVFFDSIEVAVLYQDIKF 60

Query: 91  SNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LN 150
           SN SLSPFYQ ++G  LL  +FDGQQLMNL+AEQLAVF LEKLV+ F++K+EL     + 
Sbjct: 61  SNMSLSPFYQGEEGKSLLNFRFDGQQLMNLDAEQLAVFTLEKLVDIFSIKVELRLHMRVK 120

Query: 151 IDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
           I  I+IKL PKVRCGLNLPL+S GR+FLRF+IIGC VAY
Sbjct: 121 IGFIRIKLNPKVRCGLNLPLVSHGRSFLRFRIIGCFVAY 159

[Close]

BLAST of Carg16206 vs. NCBI nr
Match: KGN59193.1 (hypothetical protein Csa_3G778980 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50
Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDI 88
           +TM  K+KF V +A+LTQFN TDD QLLF L++NM VKNPNR FGVFFD IEV VLYQ I
Sbjct: 1   MTMTRKLKFQVNNANLTQFNLTDDSQLLFQLSLNMTVKNPNRGFGVFFDSIEVAVLYQGI 60

Query: 89  KFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL----- 148
           KFSN SLSPFYQ Q+G   L  +FDGQQLMNL+A+QLAVF LE+LV+ F++K+EL     
Sbjct: 61  KFSNVSLSPFYQGQEGKSSLNFRFDGQQLMNLDAKQLAVFTLEQLVDIFSIKVELRLHMR 120

Query: 149 LNIDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
           + I  I+IKL PKVRCGLNLPLIS  R+  RF+IIGC V Y
Sbjct: 121 VKIGFIRIKLNPKVRCGLNLPLISHERSLFRFRIIGCFVTY 161

[Close]

BLAST of Carg16206 vs. NCBI nr
Match: XP_004136710.1 (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 31  MANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKF 90
           M  K+KF V +A+LTQFN TDD QLLF L++NM VKNPNR FGVFFD IEV VLYQ IKF
Sbjct: 1   MTRKLKFQVNNANLTQFNLTDDSQLLFQLSLNMTVKNPNRGFGVFFDSIEVAVLYQGIKF 60

Query: 91  SNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LN 150
           SN SLSPFYQ Q+G   L  +FDGQQLMNL+A+QLAVF LE+LV+ F++K+EL     + 
Sbjct: 61  SNVSLSPFYQGQEGKSSLNFRFDGQQLMNLDAKQLAVFTLEQLVDIFSIKVELRLHMRVK 120

Query: 151 IDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
           I  I+IKL PKVRCGLNLPLIS  R+  RF+IIGC V Y
Sbjct: 121 IGFIRIKLNPKVRCGLNLPLISHERSLFRFRIIGCFVTY 159

[Close]

BLAST of Carg16206 vs. TAIR10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTD-DKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQD 88
           I     IKFHV DA LT+F+ T  D  L ++L + + V+NPN+  G+++DRIE    Y+ 
Sbjct: 62  IVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEG 121

Query: 89  IKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-LNI 148
            +FS  +L+PFYQ    + +L   F GQ L+  NA Q      E++   + ++++  L +
Sbjct: 122 KRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRV 181

Query: 149 -----DLIKIKLKPKVRC-GLNLPLISRGRT 172
                DL   ++KPKV C  L LPL +   T
Sbjct: 182 RFKLGDLKFRRIKPKVDCDDLRLPLSTSNGT 212

[Close]

BLAST of Carg16206 vs. TAIR10
Match: AT5G06320.1 (NDR1/HIN1-like 3)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-17
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFS- 92
           N IKFHV DA LT+F       L ++L +N  ++NPNR  GV++D IEV   Y D +F  
Sbjct: 73  NAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGM 132

Query: 93  NASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LNI 152
           + ++S FYQ    + ++  K  GQQL+ L+  +      +   + + +  +L        
Sbjct: 133 SNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKF 192

Query: 153 DLIKI-KLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
            LIK  + KPK++C L +PL S   +   FQ   C V +
Sbjct: 193 GLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Carg16206 vs. TAIR10
Match: AT3G11650.1 (NDR1/HIN1-like 2)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-15
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSN 92
           N +KF+V DA+L +F+F  +  L + L +N  ++NPN+  GV++D   V+  Y D +F +
Sbjct: 80  NAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGS 139

Query: 93  ASLSPFYQDQDGSKLLKLKFDGQQLMNL------NAEQLAVFGLEKLVETFTLKLELLNI 152
           A++S FYQ    + ++  K +GQ L+ L      + +     G+ ++     L +     
Sbjct: 140 ANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFW 199

Query: 153 DLIKIKLKPKVRC-GLNLPLISRGRT-FLRFQIIGC 181
            +   KLKPK++C  L +PL S   T   +FQ + C
Sbjct: 200 FIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQC 235

[Close]

BLAST of Carg16206 vs. TAIR10
Match: AT1G32270.1 (syntaxin, putative)

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-15
Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 32  ANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFS 91
           +N +KF V DA+LT F+   +  L + L++N+ ++N   + G+ +DR E TV Y + +  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLG 63

Query: 92  NASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVF------GLEKLVETFTLKLELLN 151
              +  FY     + LL+  F+GQ L+ L   +   F      G+ ++    ++   ++ 
Sbjct: 64  AVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMV 123

Query: 152 IDLIKIKLKPKVRCGLNLPL 166
           + L+   +KP VRC L +PL
Sbjct: 124 LHLVTWPMKPVVRCHLKIPL 143

[Close]

BLAST of Carg16206 vs. TAIR10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-14
Identity = 48/162 (29.63%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTD-DKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQD 88
           I   N +KF V +ADLT+F F      L +++++N  ++NPN+  G+ +D++EV   Y D
Sbjct: 75  ILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYDQLEVRGYYGD 134

Query: 89  IKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVF------GLEKLVETFTLKL 148
            +FS A+++ FYQ    + ++  + +GQ+L+ L A     F      G+ ++      K 
Sbjct: 135 QRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKX 194

Query: 149 ELLNIDLIKIKLKPKVRCGLNLPL-ISRGRTFLRFQIIGCHV 183
                 L    ++PK++C L +PL  S      +F    CHV
Sbjct: 195 XXXFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPTKCHV 236

[Close]

BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16
Identity = 54/151 (35.76%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTD-DKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQD 88
           I     IKFHV DA LT+F+ T  D  L ++L + + V+NPN+  G+++DRIE    Y+ 
Sbjct: 62  IVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEG 121

Query: 89  IKFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-LNI 148
            +FS  +L+PFYQ    + +L   F GQ L+  NA Q      E++   + ++++  L +
Sbjct: 122 KRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRV 181

Query: 149 -----DLIKIKLKPKVRC-GLNLPLISRGRT 172
                DL   ++KPKV C  L LPL +   T
Sbjct: 182 RFKLGDLKFRRIKPKVDCDDLRLPLSTSNGT 212

[Close]

BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9FNH6|NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-16
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFS- 92
           N IKFHV DA LT+F       L ++L +N  ++NPNR  GV++D IEV   Y D +F  
Sbjct: 73  NAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGM 132

Query: 93  NASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LNI 152
           + ++S FYQ    + ++  K  GQQL+ L+  +      +   + + +  +L        
Sbjct: 133 SNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKF 192

Query: 153 DLIKI-KLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
            LIK  + KPK++C L +PL S   +   FQ   C V +
Sbjct: 193 GLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9SRN1|NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-14
Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSN 92
           N +KF+V DA+L +F+F  +  L + L +N  ++NPN+  GV++D   V+  Y D +F +
Sbjct: 80  NAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGS 139

Query: 93  ASLSPFYQDQDGSKLLKLKFDGQQLMNL------NAEQLAVFGLEKLVETFTLKLELLNI 152
           A++S FYQ    + ++  K +GQ L+ L      + +     G+ ++     L +     
Sbjct: 140 ANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFW 199

Query: 153 DLIKIKLKPKVRC-GLNLPLISRGRT-FLRFQIIGC 181
            +   KLKPK++C  L +PL S   T   +FQ + C
Sbjct: 200 FIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQC 235

[Close]

BLAST of Carg16206 vs. Swiss-Prot
Match: sp|Q9C615|SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 40/140 (28.57%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 32  ANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFS 91
           +N +KF V DA+LT F+   +  L + L++N+ ++N   + G+ +DR E TV Y + +  
Sbjct: 4   SNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLG 63

Query: 92  NASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVF------GLEKLVETFTLKLELLN 151
              +  FY     + LL+  F+GQ L+ L   +   F      G+ ++    ++   ++ 
Sbjct: 64  AVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMV 123

Query: 152 IDLIKIKLKPKVRCGLNLPL 166
           + L+   +KP VRC L +PL
Sbjct: 124 LHLVTWPMKPVVRCHLKIPL 143

[Close]

BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A1S3B7X9|A0A1S3B7X9_CUCME (NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103487149 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 31  MANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKF 90
           M  K+KF V +A LT+FN T+  QLLF L++NM V+NPNR FGVFFD IEV VLYQDIKF
Sbjct: 1   MTRKLKFQVNNAKLTKFNLTNGSQLLFQLSLNMMVQNPNRGFGVFFDSIEVAVLYQDIKF 60

Query: 91  SNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LN 150
           SN SLSPFYQ ++G  LL  +FDGQQLMNL+AEQLAVF LEKLV+ F++K+EL     + 
Sbjct: 61  SNMSLSPFYQGEEGKSLLNFRFDGQQLMNLDAEQLAVFTLEKLVDIFSIKVELRLHMRVK 120

Query: 151 IDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
           I  I+IKL PKVRCGLNLPL+S GR+FLRF+IIGC VAY
Sbjct: 121 IGFIRIKLNPKVRCGLNLPLVSHGRSFLRFRIIGCFVAY 159

[Close]

BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A0A0LBJ3|A0A0A0LBJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778980 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.4e-50
Identity = 106/161 (65.84%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDI 88
           +TM  K+KF V +A+LTQFN TDD QLLF L++NM VKNPNR FGVFFD IEV VLYQ I
Sbjct: 1   MTMTRKLKFQVNNANLTQFNLTDDSQLLFQLSLNMTVKNPNRGFGVFFDSIEVAVLYQGI 60

Query: 89  KFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL----- 148
           KFSN SLSPFYQ Q+G   L  +FDGQQLMNL+A+QLAVF LE+LV+ F++K+EL     
Sbjct: 61  KFSNVSLSPFYQGQEGKSSLNFRFDGQQLMNLDAKQLAVFTLEQLVDIFSIKVELRLHMR 120

Query: 149 LNIDLIKIKLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
           + I  I+IKL PKVRCGLNLPLIS  R+  RF+IIGC V Y
Sbjct: 121 VKIGFIRIKLNPKVRCGLNLPLISHERSLFRFRIIGCFVTY 161

[Close]

BLAST of Carg16206 vs. TrEMBL
Match: tr|A5AZX3|A5AZX3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034236 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.8e-24
Identity = 64/162 (39.51%), Postives = 94/162 (58.02%), Query Frame = 0


Query: 29  ITMANKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDI 88
           I   NK+KFHV+DA LT+FN T D  L ++LTVNM V+NPN+  G++FDRIE    Y+D 
Sbjct: 65  IVRPNKVKFHVVDASLTEFNLTSDNILQYNLTVNMTVRNPNKRIGIYFDRIEAKAYYEDA 124

Query: 89  KFSNASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL----- 148
            F +  L  +YQ    +  L  +F G+  ++L A +L+ F  EK   T+++ ++L     
Sbjct: 125 LFDSVELERYYQGHKSTHTLNPEFTGENSVSLGASELSNFNSEKASGTYSIDVKLRLRIR 184

Query: 149 LNIDLIKI-KLKPKVRCGLNLPLISRGRTFLRFQIIGCHVAY 185
             + ++KI   KPKV C L +PL S G +   FQ   C V +
Sbjct: 185 FKLGILKIGTFKPKVTCDLKVPLDSDGTSSGTFQTTKCDVNF 226

[Close]

BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A2P5FHZ9|A0A2P5FHZ9_9ROSA (Late embryogenesis abundant protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068770 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSN 92
           N+IKFHV DA LTQFNFTD+ QL ++L VN+ V+NPN+  GV++DRIE    Y+  +F  
Sbjct: 72  NQIKFHVTDAKLTQFNFTDNNQLHYNLAVNITVRNPNKKIGVYYDRIEARASYEGQRFDA 131

Query: 93  ASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LNID 152
             L PFYQ    + +L   FDGQQ++ LN E  A F  EK    +++ ++L       + 
Sbjct: 132 VPLEPFYQGHKNTAVLSPVFDGQQMIVLNTEDQAEFNKEKSSGLYSIDVKLYLRIRFKLG 191

Query: 153 LIKI-KLKPKVRCGLNLPLISRGR-TFLRFQIIGC 181
           +IK  ++KPK+ C L +PL + G+ T   FQ   C
Sbjct: 192 VIKTWRMKPKIECDLKVPLSADGKSTVGSFQTTKC 226

[Close]

BLAST of Carg16206 vs. TrEMBL
Match: tr|A0A2P5D9X6|A0A2P5D9X6_PARAD (Late embryogenesis abundant protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_082630 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 33  NKIKFHVIDADLTQFNFTDDKQLLFDLTVNMKVKNPNRAFGVFFDRIEVTVLYQDIKFSN 92
           N+IKFHV DA LTQFNFTD+ QL ++L VN+ V+NPN+  GV++DRIE    Y+  +F  
Sbjct: 72  NQIKFHVTDAKLTQFNFTDNNQLHYNLAVNITVRNPNKKIGVYYDRIEARASYEGQRFDA 131

Query: 93  ASLSPFYQDQDGSKLLKLKFDGQQLMNLNAEQLAVFGLEKLVETFTLKLEL-----LNID 152
             L PFYQ    + +L   FDGQQ++ LN E  A F  EK    +++ ++L       + 
Sbjct: 132 VPLEPFYQGHKNTAVLSPVFDGQQMIVLNTEDQAEFNKEKSSGLYSIDVKLYLRIRFKLG 191

Query: 153 LIKI-KLKPKVRCGLNLPLISRGR-TFLRFQIIGC 181
           +IK  ++KPK+ C L +PL + G+ T   FQ   C
Sbjct: 192 VIKTWRMKPKIECDLKVPLSADGKSTVGSFQTTKC 226

The following BLAST results are available for this feature:

BLAST of Carg16206 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005830.1	3.2e-67	83.60	NDR1/HIN1-like protein 3 [Cucurbita maxima]	[more]
XP_022957840.1	2.1e-66	84.66	NDR1/HIN1-like protein 3 [Cucurbita moschata]	[more]
XP_008443593.1	1.9e-51	67.30	PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo]	[more]
KGN59193.1	3.6e-50	65.84	hypothetical protein Csa_3G778980 [Cucumis sativus]	[more]
XP_004136710.1	1.4e-49	66.04	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]

BLAST of Carg16206 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	5.8e-18	35.76	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G06320.1	3.7e-17	33.33	NDR1/HIN1-like 3	[more]
AT3G11650.1	4.6e-15	30.77	NDR1/HIN1-like 2	[more]
AT1G32270.1	7.8e-15	28.57	syntaxin, putative	[more]
AT2G35460.1	8.6e-14	29.63	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg16206 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SJ52\|NHL10_ARATH	1.0e-16	35.76	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
sp\|Q9FNH6\|NHL3_ARATH	6.7e-16	33.33	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
sp\|Q9SRN1\|NHL2_ARATH	8.2e-14	30.77	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
sp\|Q9C615\|SYP24_ARATH	1.4e-13	28.57	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]

BLAST of Carg16206 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7X9\|A0A1S3B7X9_CUCME	1.3e-51	67.30	NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103487149 PE=4 SV=1	[more]
tr\|A0A0A0LBJ3\|A0A0A0LBJ3_CUCSA	2.4e-50	65.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778980 PE=4 SV=1	[more]
tr\|A5AZX3\|A5AZX3_VITVI	3.8e-24	39.51	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034236 PE=4 SV=1	[more]
tr\|A0A2P5FHZ9\|A0A2P5FHZ9_9ROSA	6.5e-24	42.58	Late embryogenesis abundant protein OS=Trema orientalis OX=63057 GN=TorRG33x02_0...	[more]
tr\|A0A2P5D9X6\|A0A2P5D9X6_PARAD	6.5e-24	42.58	Late embryogenesis abundant protein OS=Parasponia andersonii OX=3476 GN=PanWU01x...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16206-RA	Carg16206-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 63..117 e-value: 1.1E-7 score: 32.2
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 7..183
None	No IPR available	PANTHER	PTHR31415:SF4	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED	coord: 7..183
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 15..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16206	Cla017637	Watermelon (97103) v1	carwmB0677
Carg16206	Csa3G778960	Cucumber (Chinese Long) v2	carcuB0700
Carg16206	MELO3C009531	Melon (DHL92) v3.5.1	carmeB0679
Carg16206	CSPI03G35480	Wild cucumber (PI 183967)	carcpiB0712
Carg16206	Cucsa.241680	Cucumber (Gy14) v1	carcgyB0758
Carg16206	CmaCh06G005130	Cucurbita maxima (Rimu)	carcmaB0957
Carg16206	CmaCh14G003500	Cucurbita maxima (Rimu)	carcmaB0955
Carg16206	CmoCh14G003470	Cucurbita moschata (Rifu)	carcmoB0931
Carg16206	CmoCh06G005140	Cucurbita moschata (Rifu)	carcmoB0933
Carg16206	Lsi03G018300	Bottle gourd (USVL1VR-Ls)	carlsiB620
Carg16206	Cp4.1LG08g09780	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16206	Cp4.1LG03g00660	Cucurbita pepo (Zucchini)	carcpeB0956
Carg16206	CsGy3G032930	Cucumber (Gy14) v2	carcgybB0676
Carg16206	MELO3C009531.2	Melon (DHL92) v3.6.1	carmedB0691
Carg16206	CsaV3_3G037820	Cucumber (Chinese Long) v3	carcucB0714
Carg16206	Cla97C10G201400	Watermelon (97103) v2	carwmbB0706
Carg16206	Bhi11G001998	Wax gourd	carwgoB0796

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16206	Carg03636	Silver-seed gourd	carcarB291

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16206	Watermelon (Charleston Gray)	carwcgB0656
Carg16206	Wax gourd	carwgoB0795