Carg16103 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16103
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_068 : 113235 .. 114830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTTTTGCGATTTCGTAGATTTTCCACTCTACTGAGCTCTGTAGCCAGAACTTCTGCTTCTGTAAACCCTAATTTGGATGTGACTTTACGAAATAGGAAATGGAATCCAATTCCAATACCTCACCGATCAATTCCCGAACCCAGAGGACAAGACCTTGATTTTGTTAACGTCGTACATAGCCACCTGATTCATTCGGATTGGACTAAGCTTGATTGTTTGTCATCGGGTCTGACAGCATTCAGAGTCAAACACATTCTACTCAAAACCCGGAAGGACTATGTACTATCGCTCGAGTTCTTCAATTGGGTTACCACTCAAAATCCTTCTTCTCATACCCTTGAGACCCATTGCATAATCCTCCATATACTTGCTAAACATAGGAAGTTTAAATCTGCAGAATCAATTTTAAGGAGTATCATAGATTCCTGTTCTATTGAGTTTCCTTCTAAGTTGTTTGAATCCTTATTGTACTCTTACCGAGTCTGTGATTCTTCCCCGCATGTTTTCGATCTGCTTTTCAAGACTTTTGCTCATTTGAAGAAGTACAGAAATGCCTCTGATACATTTTGTAAGATGAAGGATTATGGATTTTTACCCACTGTGGAGTCATGTAATGCATTTCTGAGTTCCTTGATTAATTTCAACAGGGGAGATATTGCTTCGACGTTTTATAGAGAAATGCGACGTTGTCGGATTTCGCCTAATTCGTATACGCTCAACTTGGTTATTTGTGCTTCCTGTAAATTGGGAAGATTAGATAAGGCTACTGAGGTGTTTGAGGAAATGAAAACAATGGGGTTTTCTCCAAATGTTGCATCTTACAATACACTTATTGCAGGCTACTGTAACAAAGGTCTTATAAGCTCAGCCATGAAACTCAGAAGTACAATGGAAAGAAATGGAGTTCCTCCAGATGTTGTTACTTTTAATACTCTTATCAATGGGTTCTGTAAGGACGGGAAGCTTCAAGAAGCAAGTAGATTATTTGGAGAGATGAAAGCAATGGGTTTATCTCCCACTACTGTAACCTACAACACTTTGATAAATGGCTACAGCAAAATGGGCAATACCGACATGGGCAATAGACTTTTTGAGGAGATGTCGAGGTTTCGAGTTAAACCCGATATCCTTACTTACAATGCCCTGATCTTGGGACTATGCAAAGAGGGAAAGACAAAGAATGCAGCATTTCTGGTTCGAGAGCTTGACGGGAAGAAACTAGTTCCAAATGCTTCGACGTTTTCTGCTCTAATTTGTGGGCAGTGTGTGCGGAAGAATTCGGAGCGTGCATTTCAAATATATAACAGTATGATGAAAAGTGGTTTTAGCCCTTGTGACCAGACCTTTAGGATGCTATTGTCCACTTTCCTTGATAATGAGGATTATGATGGAGCAGTTCAATTGTTGAAGGACATGGTGAAGAGACACAGGGCTCCTGATTTGGATAACTTATGTGAGCTTTGTGTTGGACTTGGCCGATGTGGGAATGGTAAAACAGCTATAATGTTATGCAGTGAGTTGGAAGCTCAACATCTCTTGCCAGAAGGTTTTGACAAACTCAAAGTATTCAATTCATTGCACAATGGATAG

mRNA sequence

ATGAGGGTTTTGCGATTTCGTAGATTTTCCACTCTACTGAGCTCTGTAGCCAGAACTTCTGCTTCTGTAAACCCTAATTTGGATGTGACTTTACGAAATAGGAAATGGAATCCAATTCCAATACCTCACCGATCAATTCCCGAACCCAGAGGACAAGACCTTGATTTTGTTAACGTCGTACATAGCCACCTGATTCATTCGGATTGGACTAAGCTTGATTGTTTGTCATCGGGTCTGACAGCATTCAGAGTCAAACACATTCTACTCAAAACCCGGAAGGACTATGTACTATCGCTCGAGTTCTTCAATTGGGTTACCACTCAAAATCCTTCTTCTCATACCCTTGAGACCCATTGCATAATCCTCCATATACTTGCTAAACATAGGAAGTTTAAATCTGCAGAATCAATTTTAAGGAGTATCATAGATTCCTGTTCTATTGAGTTTCCTTCTAAGTTGTTTGAATCCTTATTGTACTCTTACCGAGTCTGTGATTCTTCCCCGCATGTTTTCGATCTGCTTTTCAAGACTTTTGCTCATTTGAAGAAGTACAGAAATGCCTCTGATACATTTTGTAAGATGAAGGATTATGGATTTTTACCCACTGTGGAGTCATGTAATGCATTTCTGAGTTCCTTGATTAATTTCAACAGGGGAGATATTGCTTCGACGTTTTATAGAGAAATGCGACGTTGTCGGATTTCGCCTAATTCGTATACGCTCAACTTGGTTATTTGTGCTTCCTGTAAATTGGGAAGATTAGATAAGGCTACTGAGGTGTTTGAGGAAATGAAAACAATGGGGTTTTCTCCAAATGTTGCATCTTACAATACACTTATTGCAGGCTACTGTAACAAAGGTCTTATAAGCTCAGCCATGAAACTCAGAAGTACAATGGAAAGAAATGGAGTTCCTCCAGATGTTGTTACTTTTAATACTCTTATCAATGGGTTCTGTAAGGACGGGAAGCTTCAAGAAGCAAGTAGATTATTTGGAGAGATGAAAGCAATGGGTTTATCTCCCACTACTGTAACCTACAACACTTTGATAAATGGCTACAGCAAAATGGGCAATACCGACATGGGCAATAGACTTTTTGAGGAGATGTCGAGGTTTCGAGTTAAACCCGATATCCTTACTTACAATGCCCTGATCTTGGGACTATGCAAAGAGGGAAAGACAAAGAATGCAGCATTTCTGGTTCGAGAGCTTGACGGGAAGAAACTAGTTCCAAATGCTTCGACGTTTTCTGCTCTAATTTGTGGGCAGTGTGTGCGGAAGAATTCGGAGCGTGCATTTCAAATATATAACAGTATGATGAAAAGTGGTTTTAGCCCTTGTGACCAGACCTTTAGGATGCTATTGTCCACTTTCCTTGATAATGAGGATTATGATGGAGCAGTTCAATTGTTGAAGGACATGGTGAAGAGACACAGGGCTCCTGATTTGGATAACTTATGTGAGCTTTGTGTTGGACTTGGCCGATGTGGGAATGGTAAAACAGCTATAATGTTATGCAGTGAGTTGGAAGCTCAACATCTCTTGCCAGAAGGTTTTGACAAACTCAAAGTATTCAATTCATTGCACAATGGATAG

Coding sequence (CDS)

ATGAGGGTTTTGCGATTTCGTAGATTTTCCACTCTACTGAGCTCTGTAGCCAGAACTTCTGCTTCTGTAAACCCTAATTTGGATGTGACTTTACGAAATAGGAAATGGAATCCAATTCCAATACCTCACCGATCAATTCCCGAACCCAGAGGACAAGACCTTGATTTTGTTAACGTCGTACATAGCCACCTGATTCATTCGGATTGGACTAAGCTTGATTGTTTGTCATCGGGTCTGACAGCATTCAGAGTCAAACACATTCTACTCAAAACCCGGAAGGACTATGTACTATCGCTCGAGTTCTTCAATTGGGTTACCACTCAAAATCCTTCTTCTCATACCCTTGAGACCCATTGCATAATCCTCCATATACTTGCTAAACATAGGAAGTTTAAATCTGCAGAATCAATTTTAAGGAGTATCATAGATTCCTGTTCTATTGAGTTTCCTTCTAAGTTGTTTGAATCCTTATTGTACTCTTACCGAGTCTGTGATTCTTCCCCGCATGTTTTCGATCTGCTTTTCAAGACTTTTGCTCATTTGAAGAAGTACAGAAATGCCTCTGATACATTTTGTAAGATGAAGGATTATGGATTTTTACCCACTGTGGAGTCATGTAATGCATTTCTGAGTTCCTTGATTAATTTCAACAGGGGAGATATTGCTTCGACGTTTTATAGAGAAATGCGACGTTGTCGGATTTCGCCTAATTCGTATACGCTCAACTTGGTTATTTGTGCTTCCTGTAAATTGGGAAGATTAGATAAGGCTACTGAGGTGTTTGAGGAAATGAAAACAATGGGGTTTTCTCCAAATGTTGCATCTTACAATACACTTATTGCAGGCTACTGTAACAAAGGTCTTATAAGCTCAGCCATGAAACTCAGAAGTACAATGGAAAGAAATGGAGTTCCTCCAGATGTTGTTACTTTTAATACTCTTATCAATGGGTTCTGTAAGGACGGGAAGCTTCAAGAAGCAAGTAGATTATTTGGAGAGATGAAAGCAATGGGTTTATCTCCCACTACTGTAACCTACAACACTTTGATAAATGGCTACAGCAAAATGGGCAATACCGACATGGGCAATAGACTTTTTGAGGAGATGTCGAGGTTTCGAGTTAAACCCGATATCCTTACTTACAATGCCCTGATCTTGGGACTATGCAAAGAGGGAAAGACAAAGAATGCAGCATTTCTGGTTCGAGAGCTTGACGGGAAGAAACTAGTTCCAAATGCTTCGACGTTTTCTGCTCTAATTTGTGGGCAGTGTGTGCGGAAGAATTCGGAGCGTGCATTTCAAATATATAACAGTATGATGAAAAGTGGTTTTAGCCCTTGTGACCAGACCTTTAGGATGCTATTGTCCACTTTCCTTGATAATGAGGATTATGATGGAGCAGTTCAATTGTTGAAGGACATGGTGAAGAGACACAGGGCTCCTGATTTGGATAACTTATGTGAGCTTTGTGTTGGACTTGGCCGATGTGGGAATGGTAAAACAGCTATAATGTTATGCAGTGAGTTGGAAGCTCAACATCTCTTGCCAGAAGGTTTTGACAAACTCAAAGTATTCAATTCATTGCACAATGGATAG

Protein sequence

MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVVHSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYREMRRCRISPNSYTLNLVICASCKLGRLDKATEVFEEMKTMGFSPNVASYNTLIAGYCNKGLISSAMKLRSTMERNGVPPDVVTFNTLINGFCKDGKLQEASRLFGEMKAMGLSPTTVTYNTLINGYSKMGNTDMGNRLFEEMSRFRVKPDILTYNALILGLCKEGKTKNAAFLVRELDGKKLVPNASTFSALICGQCVRKNSERAFQIYNSMMKSGFSPCDQTFRMLLSTFLDNEDYDGAVQLLKDMVKRHRAPDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG

Homology

[Close]

BLAST of Carg16103 vs. NCBI nr
Match: XP_022943886.1 (pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita moschata])

HSP 1 Score: 484.2 bits (1245), Expect = 5.7e-133
Identity = 531/531 (100.00%), Postives = 531/531 (100.00%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV
Sbjct: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240
           LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX
Sbjct: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA 480

Query: 481 PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG 532
           PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG
Sbjct: 481 PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG 531

[Close]

BLAST of Carg16103 vs. NCBI nr
Match: XP_023513230.1 (pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480.7 bits (1236), Expect = 6.3e-132
Identity = 530/531 (99.81%), Postives = 530/531 (99.81%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV
Sbjct: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240
           LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX
Sbjct: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RA
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRA 480

Query: 481 PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG 532
           PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG
Sbjct: 481 PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG 531

[Close]

BLAST of Carg16103 vs. NCBI nr
Match: XP_022985795.1 (pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita maxima])

HSP 1 Score: 478.0 bits (1229), Expect = 4.1e-131
Identity = 528/531 (99.44%), Postives = 529/531 (99.62%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV
Sbjct: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDWTKLDCLSSGLTAFRVKHILLK+RKDYVLSLEFFNWVTTQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKSRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240
           LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX
Sbjct: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYRXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA 480
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA
Sbjct: 421 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRA 480

Query: 481 PDLDNLCELCVGLGRCGNGKTAIMLCSELEAQHLLPEGFDKLKVFNSLHNG 532
           PDLDNLCELCVGLGRCGNGK AIMLCSELEAQHLLPEGFDKLKVFN LHNG
Sbjct: 481 PDLDNLCELCVGLGRCGNGKIAIMLCSELEAQHLLPEGFDKLKVFNLLHNG 531

[Close]

BLAST of Carg16103 vs. NCBI nr
Match: XP_022140266.1 (pentatricopeptide repeat-containing protein At4g26680, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 415.6 bits (1067), Expect = 2.5e-112
Identity = 200/227 (88.11%), Postives = 209/227 (92.07%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MR + FRRFSTLL SV R SAS NP +DV L  + WNP PIPHRSIPEPRGQDLD VNVV
Sbjct: 1   MRFVPFRRFSTLLGSVPRNSASANPKMDVNLGKKNWNPTPIPHRSIPEPRGQDLDVVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDWTKLDCLS GLTAFRVKHILLK +KDYV+SLEFFNWV TQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWTKLDCLSLGLTAFRVKHILLKIQKDYVISLEFFNWVATQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHILAKHRKFKSAESILRS+I+SCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILAKHRKFKSAESILRSMIESCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           LKK+RNASDTFCKMKDYGFLPTVESCNAFLSSL+NFNRGDIA  FYR
Sbjct: 181 LKKFRNASDTFCKMKDYGFLPTVESCNAFLSSLLNFNRGDIALAFYR 227

[Close]

BLAST of Carg16103 vs. NCBI nr
Match: XP_008464167.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucumis melo])

HSP 1 Score: 407.1 bits (1045), Expect = 8.9e-110
Identity = 198/227 (87.22%), Postives = 209/227 (92.07%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MR L FRRFSTLL SV RT AS+NP LDV L  R  N IPIPHRSIPEPRGQDLDFVNVV
Sbjct: 1   MRFLPFRRFSTLLGSVPRTYASINPKLDVRLGKRNRNSIPIPHRSIPEPRGQDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDW+KLDCLS G+TAFRVKHILLKT+KDYVLSLEFFNWV TQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWSKLDCLSMGMTAFRVKHILLKTQKDYVLSLEFFNWVATQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHIL K RKFKSAESILRSII+SCSI+FPSKLFESLLYSYR+CDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILTKSRKFKSAESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           LKK+RNASDTFCKMKDYGFLPTVESCNAFLSSL+NF+RGDI  +FYR
Sbjct: 181 LKKFRNASDTFCKMKDYGFLPTVESCNAFLSSLLNFSRGDIVLSFYR 227

[Close]

BLAST of Carg16103 vs. TAIR10
Match: AT4G26680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 285.4 bits (729), Expect = 7.1e-77
Identity = 142/221 (64.25%), Postives = 169/221 (76.47%), Query Frame = 0


Query: 7   RRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVVHSHLIH 66
           RR     SS A  S S NP L  TL        PIPHR  PEP+GQDLDFVNV HSHLI 
Sbjct: 10  RRLRYQFSSFAGYSGSENPRLFKTLGAAN---TPIPHRRNPEPKGQDLDFVNVAHSHLIQ 69

Query: 67  SDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILA 126
           SDW KL+ LS  L +FRVK++LLK +KDY+LSLEFFNW  T+NP SH+LETH I+LH L 
Sbjct: 70  SDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLT 129

Query: 127 KHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRN 186
           K+RKFKSAESILR ++ +  ++ P+K+F++LLYSYR CDS+P VFD LFKTFAHLKK+RN
Sbjct: 130 KNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRN 189

Query: 187 ASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           A+DTF +MKDYGFLPTVESCNA++SSL+   R DIA  FYR
Sbjct: 190 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYR 227

[Close]

BLAST of Carg16103 vs. TAIR10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-15
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 82  FRVKH---ILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILAKHRKFKSAESIL 141
           F+  H   +L+K + DY L L+FF+W  ++  S+  LE+ CI++H+    +  K A+S++
Sbjct: 85  FKTDHLIWVLMKIKCDYRLVLDFFDWARSRRDSN--LESLCIVIHLAVASKDLKVAQSLI 144

Query: 142 RSIIDSCSIEFPS---KLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNASDTFCKMK 201
            S  +   +       + F+ L+Y+Y+   S P VFD+ F+        R A   F KM 
Sbjct: 145 SSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKML 204

Query: 202 DYGFLPTVESCNAFLSSL 214
           +YG + +V+SCN +L+ L
Sbjct: 205 NYGLVLSVDSCNVYLTRL 220

[Close]

BLAST of Carg16103 vs. TAIR10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-15
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 71  KLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSS-HTLETHCIILHILAKHR 130
           +L  LS+  T     ++LLK++ D  L L+F NW    NP    TL   CI LHIL K +
Sbjct: 38  QLHHLSANFTPEAASNLLLKSQNDQALILKFLNWA---NPHQFFTLRCKCITLHILTKFK 97

Query: 131 KFKSAESILRSI-IDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNAS 190
            +K+A+ +   +   +   E+ S +F+SL  +Y +C S+  VFDL+ K+++ L     A 
Sbjct: 98  LYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKAL 157

Query: 191 DTFCKMKDYGFLPTVESCNAFLSSLINFNR 219
                 + +GF+P V S NA L + I   R
Sbjct: 158 SIVHLAQAHGFMPGVLSYNAVLDATIRSKR 184

[Close]

BLAST of Carg16103 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-13
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 84  VKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILAKHRKFKSAESILRSIID 143
           V  +L++ ++D  L+ +FF W  T+N   H++E++CI+ HIL   R +  A S+L+ ++ 
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

Query: 144 SCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNASDTFCKMKDYGFLPTV 203
           S   +    +F+ L  +  VC     VFD LF     L     A   F KMK +   P  
Sbjct: 171 S---KADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKT 230

Query: 204 ESCNAFL 211
            SCN  L
Sbjct: 231 RSCNGLL 234

[Close]

BLAST of Carg16103 vs. TAIR10
Match: AT2G15980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 7.2e-13
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 0


Query: 55  DFVNVVHSHLIHSDWTKLDCLS-SGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSH 114
           D V+++  H   S W+ L  L  SG T  +   I L  R +  LSL FF +    +  SH
Sbjct: 44  DAVSILTHHRSKSRWSTLRSLQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSH 103

Query: 115 TLETHCIILHILAKHRKFKSAESILRSIIDSCSIEFPS----KLFESLLYSYRVCDSSPH 174
              +   ++HIL++ R    A  I+R  +   + +       K+F SL+ SY  C S+P 
Sbjct: 104 DTHSCSTLIHILSRSRLKSHASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPF 163

Query: 175 VFDLLFKTFAHLKKYRNASDTFCKMKDYGFLPTVESCNAFLSSL 214
           VFDLL K+    K+   A     K++  G    + +CNA ++ +
Sbjct: 164 VFDLLIKSCLDSKEIDGAVMVMRKLRSRGINAQISTCNALITEV 207

[Close]

BLAST of Carg16103 vs. Swiss-Prot
Match: sp|Q9SZ10|PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26680 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-75
Identity = 142/221 (64.25%), Postives = 169/221 (76.47%), Query Frame = 0


Query: 7   RRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVVHSHLIH 66
           RR     SS A  S S NP L  TL        PIPHR  PEP+GQDLDFVNV HSHLI 
Sbjct: 10  RRLRYQFSSFAGYSGSENPRLFKTLGAAN---TPIPHRRNPEPKGQDLDFVNVAHSHLIQ 69

Query: 67  SDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILA 126
           SDW KL+ LS  L +FRVK++LLK +KDY+LSLEFFNW  T+NP SH+LETH I+LH L 
Sbjct: 70  SDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLT 129

Query: 127 KHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRN 186
           K+RKFKSAESILR ++ +  ++ P+K+F++LLYSYR CDS+P VFD LFKTFAHLKK+RN
Sbjct: 130 KNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRN 189

Query: 187 ASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           A+DTF +MKDYGFLPTVESCNA++SSL+   R DIA  FYR
Sbjct: 190 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYR 227

[Close]

BLAST of Carg16103 vs. Swiss-Prot
Match: sp|Q0WVK7|PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-14
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 82  FRVKH---ILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILAKHRKFKSAESIL 141
           F+  H   +L+K + DY L L+FF+W  ++  S+  LE+ CI++H+    +  K A+S++
Sbjct: 85  FKTDHLIWVLMKIKCDYRLVLDFFDWARSRRDSN--LESLCIVIHLAVASKDLKVAQSLI 144

Query: 142 RSIIDSCSIEFPS---KLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNASDTFCKMK 201
            S  +   +       + F+ L+Y+Y+   S P VFD+ F+        R A   F KM 
Sbjct: 145 SSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKML 204

Query: 202 DYGFLPTVESCNAFLSSL 214
           +YG + +V+SCN +L+ L
Sbjct: 205 NYGLVLSVDSCNVYLTRL 220

[Close]

BLAST of Carg16103 vs. Swiss-Prot
Match: sp|Q9FIX3|PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-13
Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 71  KLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSS-HTLETHCIILHILAKHR 130
           +L  LS+  T     ++LLK++ D  L L+F NW    NP    TL   CI LHIL K +
Sbjct: 38  QLHHLSANFTPEAASNLLLKSQNDQALILKFLNWA---NPHQFFTLRCKCITLHILTKFK 97

Query: 131 KFKSAESILRSI-IDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNAS 190
            +K+A+ +   +   +   E+ S +F+SL  +Y +C S+  VFDL+ K+++ L     A 
Sbjct: 98  LYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKAL 157

Query: 191 DTFCKMKDYGFLPTVESCNAFLSSLINFNR 219
                 + +GF+P V S NA L + I   R
Sbjct: 158 SIVHLAQAHGFMPGVLSYNAVLDATIRSKR 184

[Close]

BLAST of Carg16103 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-12
Identity = 41/127 (32.28%), Postives = 64/127 (50.39%), Query Frame = 0


Query: 84  VKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILAKHRKFKSAESILRSIID 143
           V  +L++ ++D  L+ +FF W  T+N   H++E++CI+ HIL   R +  A S+L+ ++ 
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170

Query: 144 SCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRNASDTFCKMKDYGFLPTV 203
           S   +    +F+ L  +  VC     VFD LF     L     A   F KMK +   P  
Sbjct: 171 S---KADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKT 230

Query: 204 ESCNAFL 211
            SCN  L
Sbjct: 231 RSCNGLL 234

[Close]

BLAST of Carg16103 vs. Swiss-Prot
Match: sp|Q9XIM8|PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX=3702 GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-11
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 0


Query: 55  DFVNVVHSHLIHSDWTKLDCLS-SGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSH 114
           D V+++  H   S W+ L  L  SG T  +   I L  R +  LSL FF +    +  SH
Sbjct: 44  DAVSILTHHRSKSRWSTLRSLQPSGFTPSQFSEITLCLRNNPHLSLRFFLFTRRYSLCSH 103

Query: 115 TLETHCIILHILAKHRKFKSAESILRSIIDSCSIEFPS----KLFESLLYSYRVCDSSPH 174
              +   ++HIL++ R    A  I+R  +   + +       K+F SL+ SY  C S+P 
Sbjct: 104 DTHSCSTLIHILSRSRLKSHASEIIRLALRLAATDEDEDRVLKVFRSLIKSYNRCGSAPF 163

Query: 175 VFDLLFKTFAHLKKYRNASDTFCKMKDYGFLPTVESCNAFLSSL 214
           VFDLL K+    K+   A     K++  G    + +CNA ++ +
Sbjct: 164 VFDLLIKSCLDSKEIDGAVMVMRKLRSRGINAQISTCNALITEV 207

[Close]

BLAST of Carg16103 vs. TrEMBL
Match: tr|A0A1S3CKV3|A0A1S3CKV3_CUCME (pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502115 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.9e-110
Identity = 198/227 (87.22%), Postives = 209/227 (92.07%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MR L FRRFSTLL SV RT AS+NP LDV L  R  N IPIPHRSIPEPRGQDLDFVNVV
Sbjct: 1   MRFLPFRRFSTLLGSVPRTYASINPKLDVRLGKRNRNSIPIPHRSIPEPRGQDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDW+KLDCLS G+TAFRVKHILLKT+KDYVLSLEFFNWV TQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWSKLDCLSMGMTAFRVKHILLKTQKDYVLSLEFFNWVATQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHIL K RKFKSAESILRSII+SCSI+FPSKLFESLLYSYR+CDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILTKSRKFKSAESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           LKK+RNASDTFCKMKDYGFLPTVESCNAFLSSL+NF+RGDI  +FYR
Sbjct: 181 LKKFRNASDTFCKMKDYGFLPTVESCNAFLSSLLNFSRGDIVLSFYR 227

[Close]

BLAST of Carg16103 vs. TrEMBL
Match: tr|A0A0A0KFT3|A0A0A0KFT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111910 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.6e-107
Identity = 193/227 (85.02%), Postives = 208/227 (91.63%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           MR L FRRFSTLL SV RT AS++P  D++L  R  + IPIPHRSIPEPRG DLDFVNVV
Sbjct: 1   MRFLPFRRFSTLLGSVPRTYASISPKFDLSLGKRNRDSIPIPHRSIPEPRGPDLDFVNVV 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           HSHLIHSDW+KLDCLS GLTAFRVKHILLKT+KDYVLSLEFFNWV TQNPSSHTLETHCI
Sbjct: 61  HSHLIHSDWSKLDCLSMGLTAFRVKHILLKTQKDYVLSLEFFNWVATQNPSSHTLETHCI 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHIL K RKFKSAESILRSII+SCSI+FPSKLFESLLYSYR+CDSSPHVFDLLFKTFAH
Sbjct: 121 ILHILTKRRKFKSAESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           LKK+RNASDTFC+MKDYGFLPTVESCNA+LSSL+NF+RGDIA  FYR
Sbjct: 181 LKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYR 227

[Close]

BLAST of Carg16103 vs. TrEMBL
Match: tr|A0A2P6S1E0|A0A2P6S1E0_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156201 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.2e-88
Identity = 158/227 (69.60%), Postives = 188/227 (82.82%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           M    FR+ S L +S+A+      P++ V L  R WNPIPIPHR+IPEP+GQDLDFVNVV
Sbjct: 7   MNKFPFRQVSILPNSIAKEPTFTKPSVSVNLETRNWNPIPIPHRTIPEPKGQDLDFVNVV 66

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           +SHLIHSDW KLD L++GLTAFRVKHILLK +KDYVLSLEFFNWV T  P+SHTLETH +
Sbjct: 67  NSHLIHSDWAKLDSLANGLTAFRVKHILLKIQKDYVLSLEFFNWVGTHKPTSHTLETHSM 126

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHIL K+RKFKSAESILR I+   SI+ P KLFE++LYSYR+CDSSP VFD LFKTFAH
Sbjct: 127 ILHILTKYRKFKSAESILRKILVPGSIDLPPKLFEAILYSYRLCDSSPRVFDSLFKTFAH 186

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           +KK+RNA+DTFC+MKDYGF PTVESCNA++SSL++ +R D+A  FYR
Sbjct: 187 MKKFRNATDTFCRMKDYGFYPTVESCNAYVSSLLDLHRADVALAFYR 233

[Close]

BLAST of Carg16103 vs. TrEMBL
Match: tr|A0A1R3IFJ7|A0A1R3IFJ7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12467 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.7e-86
Identity = 156/219 (71.23%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 7   RRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVVHSHLIH 66
           RRFSTL+ SV   + S+ P LD   R R W PIPIP R++PE RGQDLDFVNV HSHLIH
Sbjct: 8   RRFSTLIDSVKVKANSLKPFLDGNSRGRNWKPIPIPFRTVPEARGQDLDFVNVAHSHLIH 67

Query: 67  SDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCIILHILA 126
           SDW KL+ LS+ LT FRVKHILLK +KD+VLSLEFFNWV TQNPSSH+ ETH +ILHIL 
Sbjct: 68  SDWDKLNSLSTHLTQFRVKHILLKIQKDHVLSLEFFNWVKTQNPSSHSFETHSMILHILT 127

Query: 127 KHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAHLKKYRN 186
           K RKFKSAES+ R++I S S+E P+KLFESLLYSYR+CDSSPHVFDLLFK+FAHLKK+RN
Sbjct: 128 KSRKFKSAESVFRNVIASGSLELPAKLFESLLYSYRICDSSPHVFDLLFKSFAHLKKFRN 187

Query: 187 ASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTF 226
           A+D FC+MKDYGFLPT++SCN +LSSL++ +R DIA +F
Sbjct: 188 ATDVFCRMKDYGFLPTIKSCNTYLSSLLDLDRVDIALSF 226

[Close]

BLAST of Carg16103 vs. TrEMBL
Match: tr|M5X8L5|M5X8L5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G199000 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.5e-86
Identity = 156/227 (68.72%), Postives = 186/227 (81.94%), Query Frame = 0


Query: 1   MRVLRFRRFSTLLSSVARTSASVNPNLDVTLRNRKWNPIPIPHRSIPEPRGQDLDFVNVV 60
           M    FR+FS+L +S+A+     NP        R WNP+PIPHR+IPEP+GQDLDFVNV 
Sbjct: 1   MNKFPFRQFSSLPNSIAKEPTFTNPTTCGKFGKRNWNPLPIPHRTIPEPKGQDLDFVNVA 60

Query: 61  HSHLIHSDWTKLDCLSSGLTAFRVKHILLKTRKDYVLSLEFFNWVTTQNPSSHTLETHCI 120
           +SHLIHSDW KL+ LS+GLTAFRVKHILLK ++DYVLSLEFFNWV  QNP+S TLETH +
Sbjct: 61  NSHLIHSDWAKLNSLSNGLTAFRVKHILLKLKQDYVLSLEFFNWVAAQNPTSLTLETHSM 120

Query: 121 ILHILAKHRKFKSAESILRSIIDSCSIEFPSKLFESLLYSYRVCDSSPHVFDLLFKTFAH 180
           ILHIL K+RKFKSAESILR ++ S SI+ PSKLFE++LYSYR+CDSSP VFD LFKTFAH
Sbjct: 121 ILHILTKYRKFKSAESILRKVLVSGSIDLPSKLFEAILYSYRLCDSSPRVFDSLFKTFAH 180

Query: 181 LKKYRNASDTFCKMKDYGFLPTVESCNAFLSSLINFNRGDIASTFYR 228
           +KK+RNA+  FC+MKDYGF PTVESCNA+LSSL++ +R DIA  FYR
Sbjct: 181 MKKFRNATHIFCQMKDYGFFPTVESCNAYLSSLLDLHRADIALVFYR 227

The following BLAST results are available for this feature:

BLAST of Carg16103 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943886.1	5.7e-133	100.00	pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita ...	[more]
XP_023513230.1	6.3e-132	99.81	pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita ...	[more]
XP_022985795.1	4.1e-131	99.44	pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Cucurbita ...	[more]
XP_022140266.1	2.5e-112	88.11	pentatricopeptide repeat-containing protein At4g26680, mitochondrial isoform X1 ...	[more]
XP_008464167.1	8.9e-110	87.22	PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial ...	[more]

BLAST of Carg16103 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26680.1	7.1e-77	64.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G05670.1	2.7e-15	31.88	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G39710.1	7.7e-15	34.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02150.1	4.2e-13	32.28	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G15980.1	7.2e-13	29.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg16103 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZ10\|PP338_ARATH	1.3e-75	64.25	Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidop...	[more]
sp\|Q0WVK7\|PPR12_ARATH	4.8e-14	31.88	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
sp\|Q9FIX3\|PP407_ARATH	1.4e-13	34.00	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C894\|PP143_ARATH	7.6e-12	32.28	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
sp\|Q9XIM8\|PP155_ARATH	1.3e-11	29.88	Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg16103 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKV3\|A0A1S3CKV3_CUCME	5.9e-110	87.22	pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0KFT3\|A0A0A0KFT3_CUCSA	1.6e-107	85.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111910 PE=4 SV=1	[more]
tr\|A0A2P6S1E0\|A0A2P6S1E0_ROSCH	2.2e-88	69.60	Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen...	[more]
tr\|A0A1R3IFJ7\|A0A1R3IFJ7_COCAP	2.7e-86	71.23	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12467 PE=4 ...	[more]
tr\|M5X8L5\|M5X8L5_PRUPE	3.5e-86	68.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G199000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16103-RA	Carg16103-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 234..265 e-value: 3.1E-9 score: 36.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 415..446 e-value: 4.5E-6 score: 24.5 coord: 380..413 e-value: 6.9E-4 score: 17.6 coord: 344..378 e-value: 1.0E-9 score: 35.9 coord: 275..308 e-value: 4.0E-7 score: 27.8 coord: 309..342 e-value: 1.1E-10 score: 39.0 coord: 239..273 e-value: 1.6E-8 score: 32.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 411..458 e-value: 6.8E-8 score: 32.5 coord: 271..320 e-value: 1.7E-19 score: 69.6 coord: 341..390 e-value: 1.2E-15 score: 57.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 167..201 score: 8.309
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 307..341 score: 14.644
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 482..516 score: 5.47
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 377..411 score: 10.512
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 272..306 score: 12.518
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 412..446 score: 10.643
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 447..481 score: 7.914
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 237..271 score: 12.748
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 114..144 score: 6.193
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 342..376 score: 12.726
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 202..236 score: 8.243
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 336..403 e-value: 2.9E-21 score: 77.8 coord: 404..480 e-value: 8.5E-13 score: 50.2 coord: 266..335 e-value: 1.4E-25 score: 91.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 87..265 e-value: 2.3E-21 score: 78.7
None	No IPR available	PANTHER	PTHR24015:SF415	SUBFAMILY NOT NAMED	coord: 1..519
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..519

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16103	Cla001398	Watermelon (97103) v1	carwmB0339
Carg16103	MELO3C025970	Melon (DHL92) v3.5.1	carmeB0350
Carg16103	ClCG02G009270	Watermelon (Charleston Gray)	carwcgB0340
Carg16103	CSPI06G09170	Wild cucumber (PI 183967)	carcpiB0381
Carg16103	Cucsa.120300	Cucumber (Gy14) v1	carcgyB0408
Carg16103	CmaCh20G006820	Cucurbita maxima (Rimu)	carcmaB0486
Carg16103	Lsi10G000480	Bottle gourd (USVL1VR-Ls)	carlsiB315
Carg16103	Cp4.1LG16g03820	Cucurbita pepo (Zucchini)	carcpeB0485
Carg16103	CsGy6G009260	Cucumber (Gy14) v2	carcgybB0357
Carg16103	MELO3C025970.2	Melon (DHL92) v3.6.1	carmedB0356
Carg16103	CsaV3_6G009550	Cucumber (Chinese Long) v3	carcucB0382
Carg16103	Cla97C02G035650	Watermelon (97103) v2	carwmbB0363
Carg16103	Bhi10G001020	Wax gourd	carwgoB0433

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16103	Wax gourd	carwgoB0428
Carg16103	Wax gourd	carwgoB0429
Carg16103	Silver-seed gourd	carcarB232
Carg16103	Silver-seed gourd	carcarB372
Carg16103	Silver-seed gourd	carcarB378
Carg16103	Cucumber (Gy14) v2	carcgybB0361
Carg16103	Cucumber (Gy14) v1	carcgyB0404
Carg16103	Cucumber (Gy14) v1	carcgyB0405
Carg16103	Cucurbita maxima (Rimu)	carcmaB0483
Carg16103	Cucurbita maxima (Rimu)	carcmaB0484
Carg16103	Cucurbita maxima (Rimu)	carcmaB0487
Carg16103	Cucurbita moschata (Rifu)	carcmoB0470
Carg16103	Cucurbita moschata (Rifu)	carcmoB0471
Carg16103	Cucurbita moschata (Rifu)	carcmoB0473
Carg16103	Cucurbita moschata (Rifu)	carcmoB0474
Carg16103	Cucurbita pepo (Zucchini)	carcpeB0484
Carg16103	Cucurbita pepo (Zucchini)	carcpeB0487
Carg16103	Cucurbita pepo (Zucchini)	carcpeB0489
Carg16103	Wild cucumber (PI 183967)	carcpiB0387
Carg16103	Cucumber (Chinese Long) v2	carcuB0378
Carg16103	Cucumber (Chinese Long) v2	carcuB0384
Carg16103	Cucumber (Chinese Long) v3	carcucB0386
Carg16103	Bottle gourd (USVL1VR-Ls)	carlsiB316
Carg16103	Watermelon (Charleston Gray)	carwcgB0334
Carg16103	Watermelon (Charleston Gray)	carwcgB0336
Carg16103	Watermelon (97103) v1	carwmB0331
Carg16103	Watermelon (97103) v1	carwmB0334
Carg16103	Watermelon (97103) v2	carwmbB0357
Carg16103	Watermelon (97103) v2	carwmbB0358