Carg16084 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCGTCCATTTGAAGTGCCAAAGATTCTGTATCTAGAGATCTTGGAGTTTCTTTTCTCCAAAAGGAGTCAACGAAAACGGTGTTCCCATCTTCAAATTTATTTCTCTCAGTTTTTTAGTTGCGATACTAAGCTCTAGAACTTTGAAATGACAACAAGATAGCATTTCTCCTTTACCTTGTTTTTAAATAACGAACTCCGCAAAACGCTTCAATAAATTAGGTAATGTATTTTTCCTGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHSASSSALMTSMLSVSRSSCGWLPEGA
BLAST of Carg16084 vs. NCBI nr
Match: XP_022943543.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022943544.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_023512422.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023512423.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_022986409.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima] >XP_022986410.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima]) HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38 Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0
BLAST of Carg16084 vs. NCBI nr
Match: XP_023512420.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of Carg16084 vs. TAIR10
Match: AT1G28395.2 (unknown protein) HSP 1 Score: 65.9 bits (159), Expect = 1.5e-11 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Carg16084 vs. TAIR10
Match: AT2G33847.1 (unknown protein) HSP 1 Score: 63.2 bits (152), Expect = 9.9e-11 Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0
BLAST of Carg16084 vs. TAIR10
Match: AT2G20585.1 (nuclear fusion defective 6) HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Carg16084 vs. Swiss-Prot
Match: sp|Q93ZJ3|NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 9.8e-08 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0
BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LN06|A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34 Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LT36|A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33 Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0
BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LMP1|A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 2.9e-33 Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 0
BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A1S4E0Y3|A0A1S4E0Y3_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32 Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 0
BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A1S4E0X5|A0A1S4E0X5_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32 Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |