Carg16084 (gene) Silver-seed gourd

NameCarg16084
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
LocationCucurbita_argyrosperma_scaffold_068 : 14754 .. 15291 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCGTCCATTTGAAGTGCCAAAGATTCTGTATCTAGAGATCTTGGAGTTTCTTTTCTCCAAAAGGAGTCAACGAAAACGGTGTTCCCATCTTCAAATTTATTTCTCTCAGTTTTTTAGTTGCGATACTAAGCTCTAGAACTTTGAAATGACAACAAGATAGCATTTCTCCTTTACCTTGTTTTTAAATAACGAACTCCGCAAAACGCTTCAATAAATTAGGTAATGTATTTTTCCTGAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA

mRNA sequence

ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA

Coding sequence (CDS)

ATGGCTTCAATTGGTGCTAGATCTGTTTTCCGGTCATTTTCAGGCTCGGCACGCCGTGCTGCTGCTCAGATCGGTTCTCAAGCCAAGTCGTCATCAAGTACTCCTTTTCGCATGGCAACTACGAAGCCTCTCTCCCATCGAACTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCTTCAGCTTTGATGACCTCAATGCTCTCTGTCTCGCGCAGCAGCTGCGGTTGGCTTCCCGAAGGTGCGTAA

Protein sequence

MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHSASSSALMTSMLSVSRSSCGWLPEGA
BLAST of Carg16084 vs. NCBI nr
Match: XP_022943543.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022943544.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRS CGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGS 92

BLAST of Carg16084 vs. NCBI nr
Match: XP_023512422.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023512423.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.4 bits (420), Expect = 4.6e-38
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRSSCGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGS 92

BLAST of Carg16084 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRS CGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEG 91

BLAST of Carg16084 vs. NCBI nr
Match: XP_022986409.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima] >XP_022986410.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAK SSSTPFRMATTKPLSHRTFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 93
          SMMPFHSASSSALMTSMLSVSRSSCGWLPEG+
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGS 92

BLAST of Carg16084 vs. NCBI nr
Match: XP_023512420.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 92
          SMMPFHSASSSALMTSMLSVSRSSCGWLPEG
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 91

BLAST of Carg16084 vs. TAIR10
Match: AT1G28395.2 (unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-11
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 6  ARSVFRSFSGSARRAAAQIGSQAK---SSSSTPFRMATTKPLSHRTFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  K   SS+ T FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSSALMTSMLSVSRSSCGWLPEG 92
          +P+H+A++SAL+ SMLSVSR   GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

BLAST of Carg16084 vs. TAIR10
Match: AT2G33847.1 (unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 9.9e-11
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 6  ARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPF 65
          ARSVFRS  G A  AA +      SS+ + F++    PLSHR FR   E+S C+E+M+P+
Sbjct: 4  ARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPY 63

Query: 66 HSASSSALMTSMLSVSRSS 85
          H+A++SAL+ SMLSVS  S
Sbjct: 64 HTATASALLNSMLSVSGRS 82

BLAST of Carg16084 vs. TAIR10
Match: AT2G20585.1 (nuclear fusion defective 6)

HSP 1 Score: 57.4 bits (137), Expect = 5.4e-09
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 5  GARSVFRSFSGSARRAAAQIGSQAKSSSSTP--FRMATTKPLSHRTFRCAAEMSFCLESM 64
          GARS+ R  + S+R AAA  G  A  + S P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSVSRSSCGWLPE 91
          +P+HSA++SALMTS LS+S  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

BLAST of Carg16084 vs. Swiss-Prot
Match: sp|Q93ZJ3|NFD6_ARATH (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.8e-08
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 5  GARSVFRSFSGSARRAAAQIGSQAKSSSSTP--FRMATTKPLSHRTFRCAAEMSFCLESM 64
          GARS+ R  + S+R AAA  G  A  + S P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSSALMTSMLSVSRSSCGWLPE 91
          +P+HSA++SALMTS LS+S  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LN06|A0A0A0LN06_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARS FRSFSGSARRAAA IGSQ K+SSS+PFRMAT KPLSHRTFRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 93
          SMMPFHS SSSALMTSMLS+SR SCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LT36|A0A0A0LT36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARS FRSFSGSARRAAA IGSQ K S S+PFRMAT KPLSHRTFRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGA 93
          SMMPFHS SSSALMTSMLS+SR SCGWLPEGA
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGA 92

BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A0A0LMP1|A0A0A0LMP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-33
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARS FRSFSGSARRAAA IGSQ K+SSS+PFRMAT KPLSHRTFRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPE 91
          SMMPFHS SSSALMTSMLS+SR SCGWLPE
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPE 90

BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A1S4E0Y3|A0A1S4E0Y3_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32
Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARS FRSFSGSARRAAA IGSQ K SS++PFRMAT KPLSH TFRCA  MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 92
          SMMPFHS SSSALMTSMLS+SR SCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

BLAST of Carg16084 vs. TrEMBL
Match: tr|A0A1S4E0X5|A0A1S4E0X5_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32
Identity = 78/91 (85.71%), Postives = 81/91 (89.01%), Query Frame = 0

Query: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60
          MASIGARS FRSFSGSARRAAA IGSQ K SS++PFRMAT KPLSH TFRCA  MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEG 92
          SMMPFHS SSSALMTSMLS+SR SCGWLPEG
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEG 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022943543.14.6e-3897.83protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_023512422.14.6e-3897.83protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_022943541.16.0e-3898.90protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022986409.16.0e-3897.83protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_023512420.16.0e-3898.90protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
Match NameE-valueIdentityDescription
AT1G28395.21.5e-1147.19unknown protein[more]
AT2G33847.19.9e-1149.37unknown protein[more]
AT2G20585.15.4e-0944.32nuclear fusion defective 6[more]
Match NameE-valueIdentityDescription
sp|Q93ZJ3|NFD6_ARATH9.8e-0844.32Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LN06|A0A0A0LN06_CUCSA2.0e-3489.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1[more]
tr|A0A0A0LT36|A0A0A0LT36_CUCSA1.3e-3388.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1[more]
tr|A0A0A0LMP1|A0A0A0LMP1_CUCSA2.9e-3388.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1[more]
tr|A0A1S4E0Y3|A0A1S4E0Y3_CUCME9.5e-3285.71protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
tr|A0A1S4E0X5|A0A1S4E0X5_CUCME9.5e-3285.71protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16084-RACarg16084-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33156FAMILY NOT NAMEDcoord: 1..91
NoneNo IPR availablePANTHERPTHR33156:SF2SUBFAMILY NOT NAMEDcoord: 1..91