Carg16079 (gene) Silver-seed gourd

Overview
NameCarg16079
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGlutaredoxin family protein
LocationCucurbita_argyrosperma_scaffold_090 : 529889 .. 531526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTTTTTTCTCTCTCTCTCTTTTGGCGGGCCGTTTAGGCCCAATAGGTCTGGATATATAAGCTTAGCAGTCGAAGGATTGTGTGTAATTTTGGACGATGATGCGCGGATTTCAGTTGACTCTGGCTCTGGTGGTGATCACCCTCTCTGCCCTTCGGCCAAGAGATGGCCTTATTGGAGCCGACGCTTCGACTTCCACTTCCGCCTTCGTTCAGAATGTCATCTTCTCTAACAGGATTGCCATGTTCTCCAAATCCTACTGCCCGTATGTTCTCGTCTTCTTTTTCTTTTCTAATTAGATGAACGCACGCTTTCTGTTTTTCTTTTTCTATTTATTTTTCCTGCGTATTTCGATGGCTCAATTCGTGATATTTAGGCTTAGGAATGATTGAGTTATTGGTCCCAGTCAATCTGTAATTTCTATTAGTAGCGATTCTCGTATATTTGAGAAATAAATGTAGGATATACGAGTGCGGGATTCGGATGTTTTTGGTCAAATTTGGAGTGAATAGGAAGCTTATATTTCCCTTGTAGAGATGGGACCAAGCCAAGATAGTTTTCTCCAAGGACAGAAAGCTTGTTTGATTGCTACTGTGGCTTCTTTTTTCTTGGTGGTTTCTAGCAGATCTGTCGTCCTTGAATTATTAGAATTACGCGGTTGTCGGCGGTGGATTGAACTATTTTTATTTTGCTTAGTTCTTAGGTATGTGGAGAGAGAACTGCTTAGATGTCCAACCGTAAATATTGATCACAAGATGAATTCATTTTCTATCTAGATTGCCATTCACATGTGCGATCTTTTCAATTGGATTTCTGGAATCAGTATTACGATTGGATTCTTTACACCGTTTAGTCCCCCTGATTTTATGCTATTCCTTCTTTCTTGAAGTGAGGCTTATAGAGGTTGCGCCATGTTAGCTATTTCTTATTTACGTACTGTTCCAACTTCCAAGTGAAGTAGGTTTCTGTAACTTCTTTTGAGATTGGGTTGGGGTTTTCCTCTCTCTCTCTCTCTCCAGCAATTTCATTGATCAATGAAATTTGCTTTTTGCTTCTTCTAAAAAAGAAAAAAGAATCATCCTATACGAATAGTGAAGACCTACAAAATTATGGCACTTCAAATGGTTTCTTAAAAATAATTTAATAACAATAATTAAGCGATTCATATTCTATCTTTGTCTTATTCTACTGGTAGATATTGCATGGGTGCCAAACGCATCTTCAGTGAACTTCACGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGGTATTTATTCGGTGTTAATTTTGTTGATCATTTGCAAATTCAATAACTGTTTGAAGAATCATATTCATGACCACATAATGAGTATCTACATTCACATGTAGATGATGGACCTCAAATTCAGAGTGTCCTGCTAGACCTGACAGGCAGGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCGCTGATGGTGAGTTCTCTCGGCTTCTTAATTATTTGAAAGTTCTCTACGTCTTATTCAGTGACATAGAGTAAATTTCTCATTTCCATCACCACTTGGTTTGATTTCCATATATTTTTCAGATCTTAAAGCCGCTGTTGCTAGTGGTCAGTTGCAGAAACTTCTTGCATCAAGTTGA

mRNA sequence

TCTTTTTTTTCTCTCTCTCTCTTTTGGCGGGCCGTTTAGGCCCAATAGGTCTGGATATATAAGCTTAGCAGTCGAAGGATTGTGTGTAATTTTGGACGATGATGCGCGGATTTCAGTTGACTCTGGCTCTGGTGGTGATCACCCTCTCTGCCCTTCGGCCAAGAGATGGCCTTATTGGAGCCGACGCTTCGACTTCCACTTCCGCCTTCGTTCAGAATGTCATCTTCTCTAACAGGATTGCCATGTTCTCCAAATCCTACTGCCCATATTGCATGGGTGCCAAACGCATCTTCAGTGAACTTCACGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGACCTCAAATTCAGAGTGTCCTGCTAGACCTGACAGGCAGGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCGCTGATGATCTTAAAGCCGCTGTTGCTAGTGGTCAGTTGCAGAAACTTCTTGCATCAAGTTGA

Coding sequence (CDS)

ATGATGCGCGGATTTCAGTTGACTCTGGCTCTGGTGGTGATCACCCTCTCTGCCCTTCGGCCAAGAGATGGCCTTATTGGAGCCGACGCTTCGACTTCCACTTCCGCCTTCGTTCAGAATGTCATCTTCTCTAACAGGATTGCCATGTTCTCCAAATCCTACTGCCCATATTGCATGGGTGCCAAACGCATCTTCAGTGAACTTCACGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGACCTCAAATTCAGAGTGTCCTGCTAGACCTGACAGGCAGGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCGCTGATGATCTTAAAGCCGCTGTTGCTAGTGGTCAGTTGCAGAAACTTCTTGCATCAAGTTGA

Protein sequence

MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS
Homology
[Close]
BLAST of Carg16079 vs. NCBI nr
Match: XP_022963026.1 (glutaredoxin-C3 [Cucurbita moschata] >XP_022963027.1 glutaredoxin-C3 [Cucurbita moschata])

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-64
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60
           MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG
Sbjct: 1   MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60

Query: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120
           AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA
Sbjct: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120

Query: 121 SGQLQKLLASS 132
           SGQLQKLLASS
Sbjct: 121 SGQLQKLLASS 131

[Close]
BLAST of Carg16079 vs. NCBI nr
Match: XP_023518077.1 (glutaredoxin-C3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 4.1e-64
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60
           MMRGFQLTLALVVITLSALRPRDGL GADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG
Sbjct: 1   MMRGFQLTLALVVITLSALRPRDGLTGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60

Query: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120
           AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA
Sbjct: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120

Query: 121 SGQLQKLLASS 132
           SGQLQKLLASS
Sbjct: 121 SGQLQKLLASS 131

[Close]
BLAST of Carg16079 vs. NCBI nr
Match: XP_023003943.1 (glutaredoxin-C3-like [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 5.9e-63
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MMRGFQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60
           MMR FQLTLALVVITLSAL PRDGLIGA+ASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG
Sbjct: 1   MMRAFQLTLALVVITLSALHPRDGLIGAEASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 60

Query: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120
           AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA
Sbjct: 61  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 120

Query: 121 SGQLQKLLASS 132
           SGQLQKLLASS
Sbjct: 121 SGQLQKLLASS 131

[Close]
BLAST of Carg16079 vs. NCBI nr
Match: XP_008440783.1 (PREDICTED: glutaredoxin-C3 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 8.2e-57
Identity = 117/133 (87.97%), Postives = 126/133 (94.74%), Query Frame = 0 

Query: 1   MMRG--FQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYC 60
           MMRG  FQLTL + VITL+AL PRDGL GA+A+TSTSAFV NVI+SNRIAMFSKSYCPYC
Sbjct: 2   MMRGFHFQLTLVVAVITLAALYPRDGLPGAEAATSTSAFVHNVIYSNRIAMFSKSYCPYC 61

Query: 61  MGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAA 120
           +GAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTG+RTVPQIFVNGKHIGG+DDLKAA
Sbjct: 62  LGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAA 121

Query: 121 VASGQLQKLLASS 132
           VASGQLQKLLAS+
Sbjct: 122 VASGQLQKLLAST 134

[Close]
BLAST of Carg16079 vs. NCBI nr
Match: XP_004149976.1 (PREDICTED: glutaredoxin-C3 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 5.3e-56
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = 0 

Query: 1   MMRG--FQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYC 60
           MMRG  FQLTL L VITL+AL PRD L GA+A+TSTSAFVQNVI+SNRIAMFSKSYCPYC
Sbjct: 9   MMRGFHFQLTLVLAVITLAALYPRDALTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYC 68

Query: 61  MGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAA 120
           +GAKRIFSELHEKPFVVELDLRDDG QIQSVLLDLTG+RTVPQIFVNGKHIGG+DDLKAA
Sbjct: 69  LGAKRIFSELHEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAA 128

Query: 121 VASGQLQKLLASS 132
           VA+GQLQKLLAS+
Sbjct: 129 VANGQLQKLLAST 141

[Close]
BLAST of Carg16079 vs. TAIR10
Match: AT1G77370.1 (Glutaredoxin family protein)

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-38
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 28  ADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQ 87
           A A+ S SAFVQN I SN+I +FSKSYCPYC+ +KRIFS+L E+PFVVELD R+DG QIQ
Sbjct: 27  AGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQ 86

Query: 88  SVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
             LL+  GRRTVPQ+FVNGKHIGG+DDL AA+ SGQLQKLLA+S
Sbjct: 87  YELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130

[Close]
BLAST of Carg16079 vs. TAIR10
Match: AT5G20500.1 (Glutaredoxin family protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-28
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0 

Query: 12  VVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEK 71
           +V+ L AL     ++ + AS+  + FV+  I S++I +FSKSYCPYC  AK +F EL + 
Sbjct: 9   MVMLLVALVTFISMVSSAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQV 68

Query: 72  PFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 131
           P+VVELD R+DG  IQ+ L ++ GRRTVPQ+F+NGKH+GG+DD   A  SG+L KLL  S
Sbjct: 69  PYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS 128

[Close]
BLAST of Carg16079 vs. TAIR10
Match: AT4G28730.1 (Glutaredoxin family protein)

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-17
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 0 

Query: 38  VQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELD-LRDDGPQIQSVLLDLTGR 97
           ++  +  N + ++SK++C YC   K +F  L  +P VVELD L   GPQ+Q VL  LTG+
Sbjct: 73  IRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQ 132

Query: 98  RTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
            TVP +FV GKHIGG  D       G L+ +LA +
Sbjct: 133 HTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167

[Close]
BLAST of Carg16079 vs. TAIR10
Match: AT5G40370.2 (Glutaredoxin family protein)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-16
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 0 

Query: 38  VQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRR 97
           + + +  N   + SK+YCPYC+  K +  +L  K   VELD   DG QIQS L + TG+R
Sbjct: 31  ILSYLIGNFSGICSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQR 90

Query: 98  TVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
           TVP +F+ G HIGG D        G+L  LL  +
Sbjct: 91  TVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEA 124

[Close]
BLAST of Carg16079 vs. TAIR10
Match: AT5G63030.1 (Thioredoxin superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 0 

Query: 39  QNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRT 98
           + ++ +  + +FSK+YC YC   K++ ++L     V+ELD   DG +IQS L + TG+ T
Sbjct: 23  KEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTT 82

Query: 99  VPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
           VP +F+ G HIGG D +      G+L  LL  +
Sbjct: 83  VPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEA 115

[Close]
BLAST of Carg16079 vs. Swiss-Prot
Match: sp|Q9FVX1|GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-37
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = 0 

Query: 28  ADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQ 87
           A A+ S SAFVQN I SN+I +FSKSYCPYC+ +KRIFS+L E+PFVVELD R+DG QIQ
Sbjct: 27  AGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQ 86

Query: 88  SVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
             LL+  GRRTVPQ+FVNGKHIGG+DDL AA+ SGQLQKLLA+S
Sbjct: 87  YELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLLAAS 130

[Close]
BLAST of Carg16079 vs. Swiss-Prot
Match: sp|Q6H628|GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 0 

Query: 28  ADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQ 87
           A A+ S SAFVQN I+SNRI +FSK+YCPY M AKRIF +L E P++VELDLR+DG +IQ
Sbjct: 24  AAATRSPSAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQ 83

Query: 88  SVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
           SVLLDL GR TVPQ+FVNG+H+GG+DD   A ++GQLQKLL +S
Sbjct: 84  SVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLGNS 127

[Close]
BLAST of Carg16079 vs. Swiss-Prot
Match: sp|Q8LFQ6|GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0 

Query: 12  VVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEK 71
           +V+ L AL     ++ + AS+  + FV+  I S++I +FSKSYCPYC  AK +F EL + 
Sbjct: 9   MVMLLVALVTFISMVSSAASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQV 68

Query: 72  PFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 131
           P+VVELD R+DG  IQ+ L ++ GRRTVPQ+F+NGKH+GG+DD   A  SG+L KLL  S
Sbjct: 69  PYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS 128

[Close]
BLAST of Carg16079 vs. Swiss-Prot
Match: sp|Q0DAE4|GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 0 

Query: 35  SAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELH--EKPFVVELDLRDDGPQIQSVLLD 94
           S+FV++ + ++ + +FSKSYCPYC  AK +F EL   ++P+VVELD R+DG +IQ  L D
Sbjct: 33  SSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSD 92

Query: 95  LTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLL 129
           + GRRTVPQ+FV+GKH+GG+DD   A  SG+L KLL
Sbjct: 93  MVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128

[Close]
BLAST of Carg16079 vs. Swiss-Prot
Match: sp|P55143|GLRX_RICCO (Glutaredoxin OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 0 

Query: 39  QNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRT 98
           + ++ SN + +FSK+YCPYC   K++  +L  K  VVELD   DG +IQ+ L + TG+RT
Sbjct: 7   KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRT 66

Query: 99  VPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 132
           VP +F+ GKHIGG D   A  + GQL  LL  +
Sbjct: 67  VPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEA 99

[Close]
BLAST of Carg16079 vs. TrEMBL
Match: tr|A0A1S3B2P3|A0A1S3B2P3_CUCME (glutaredoxin-C3 OS=Cucumis melo OX=3656 GN=LOC103485100 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.4e-57
Identity = 117/133 (87.97%), Postives = 126/133 (94.74%), Query Frame = 0 

Query: 1   MMRG--FQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYC 60
           MMRG  FQLTL + VITL+AL PRDGL GA+A+TSTSAFV NVI+SNRIAMFSKSYCPYC
Sbjct: 2   MMRGFHFQLTLVVAVITLAALYPRDGLPGAEAATSTSAFVHNVIYSNRIAMFSKSYCPYC 61

Query: 61  MGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAA 120
           +GAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTG+RTVPQIFVNGKHIGG+DDLKAA
Sbjct: 62  LGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAA 121

Query: 121 VASGQLQKLLASS 132
           VASGQLQKLLAS+
Sbjct: 122 VASGQLQKLLAST 134

[Close]
BLAST of Carg16079 vs. TrEMBL
Match: tr|A0A0A0KKK8|A0A0A0KKK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504670 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 0 

Query: 5   FQLTLALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRI 64
           FQLTL L VITL+AL PRD L GA+A+TSTSAFVQNVI+SNRIAMFSKSYCPYC+GAKRI
Sbjct: 106 FQLTLVLAVITLAALYPRDALTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYCLGAKRI 165

Query: 65  FSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQL 124
           FSELHEKPFVVELDLRDDG QIQSVLLDLTG+RTVPQIFVNGKHIGG+DDLKAAVA+GQL
Sbjct: 166 FSELHEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVANGQL 225

Query: 125 QKLLASS 132
           QKLLAS+
Sbjct: 226 QKLLAST 232

[Close]
BLAST of Carg16079 vs. TrEMBL
Match: tr|A0A251NCG7|A0A251NCG7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G163800 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.6e-43
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0 

Query: 2   MRGFQLT-LALVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMG 61
           MR F+L   A +    +AL     ++ A+ASTS SAFVQNVI+SN+IA+FSKSYCPYC+ 
Sbjct: 155 MRRFELLGCAAIAAVAAALVLLGNVVVAEASTSPSAFVQNVIYSNKIAIFSKSYCPYCLR 214

Query: 62  AKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVA 121
           AKRIFSELHE+PFVVELDLRDDG QIQSVLLD+ GR TVPQIFVNGKHIGG+DDLKAAV 
Sbjct: 215 AKRIFSELHEQPFVVELDLRDDGAQIQSVLLDIVGRTTVPQIFVNGKHIGGSDDLKAAVL 274

Query: 122 SGQLQKLLASS 132
           SGQLQKLL+ S
Sbjct: 275 SGQLQKLLSIS 285

[Close]
BLAST of Carg16079 vs. TrEMBL
Match: tr|A0A2P6RM46|A0A2P6RM46_ROSCH (Putative thioredoxin-disulfide reductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0100301 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 89/120 (74.17%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 12  VVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEK 71
           V++T++A+    G    +AS+S SAFVQNVI+SN+IA+FSKSYCPYC+ AKRIFSELHE+
Sbjct: 18  VIVTVAAVLLLLGNDVVEASSSPSAFVQNVIYSNKIAIFSKSYCPYCLRAKRIFSELHEQ 77

Query: 72  PFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 131
           P+VVELDLRDDG QIQSVLLD+ GR TVPQ+FVNGKHIGG+DDLKAAVASGQLQKLL+ S
Sbjct: 78  PYVVELDLRDDGGQIQSVLLDVVGRSTVPQVFVNGKHIGGSDDLKAAVASGQLQKLLSIS 137

[Close]
BLAST of Carg16079 vs. TrEMBL
Match: tr|C6T1G2|C6T1G2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500348 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.9e-40
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0 

Query: 11  LVVITLSALRPRDGLIGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHE 70
           +V +T + L    G +   AS S SAFVQN I+SNRIA+FSKSYCPYC+ AKR+ +EL+E
Sbjct: 9   VVTVTFAVLLFWIGSLQVQASNSVSAFVQNAIYSNRIAVFSKSYCPYCLRAKRLLAELNE 68

Query: 71  KPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLAS 130
           KPFVVELDLRDDG QIQSVLLDL GRRTVPQ+FVNGKHIGG+DDL AAV SG+LQKLL++
Sbjct: 69  KPFVVELDLRDDGYQIQSVLLDLIGRRTVPQVFVNGKHIGGSDDLSAAVQSGELQKLLSA 128

Query: 131 S 132
           S
Sbjct: 129 S 129

The following BLAST results are available for this feature:
BLAST of Carg16079 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963026.11.1e-64100.00glutaredoxin-C3 [Cucurbita moschata] >XP_022963027.1 glutaredoxin-C3 [Cucurbita ... [more]
XP_023518077.14.1e-6499.24glutaredoxin-C3 [Cucurbita pepo subsp. pepo][more]
XP_023003943.15.9e-6397.71glutaredoxin-C3-like [Cucurbita maxima][more]
XP_008440783.18.2e-5787.97PREDICTED: glutaredoxin-C3 [Cucumis melo][more]
XP_004149976.15.3e-5687.22PREDICTED: glutaredoxin-C3 [Cucumis sativus][more]
BLAST of Carg16079 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77370.13.6e-3872.12Glutaredoxin family protein[more]
AT5G20500.12.0e-2850.83Glutaredoxin family protein[more]
AT4G28730.14.5e-1743.16Glutaredoxin family protein[more]
AT5G40370.26.5e-1641.49Glutaredoxin family protein[more]
AT5G63030.11.6e-1437.63Thioredoxin superfamily protein[more]
BLAST of Carg16079 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FVX1|GRXC3_ARATH6.4e-3772.12Glutaredoxin-C3 OS=Arabidopsis thaliana OX=3702 GN=GRXC3 PE=2 SV=1[more]
sp|Q6H628|GRXS6_ORYSJ1.8e-3467.31Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS6 PE=2... [more]
sp|Q8LFQ6|GRXC4_ARATH3.5e-2750.83Glutaredoxin-C4 OS=Arabidopsis thaliana OX=3702 GN=GRXC4 PE=2 SV=2[more]
sp|Q0DAE4|GRXC8_ORYSJ1.3e-2455.21Glutaredoxin-C8 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC8 PE=2 SV=2[more]
sp|P55143|GLRX_RICCO2.1e-1946.24Glutaredoxin OS=Ricinus communis OX=3988 PE=3 SV=1[more]
BLAST of Carg16079 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B2P3|A0A1S3B2P3_CUCME5.4e-5787.97glutaredoxin-C3 OS=Cucumis melo OX=3656 GN=LOC103485100 PE=4 SV=1[more]
tr|A0A0A0KKK8|A0A0A0KKK8_CUCSA2.3e-5588.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504670 PE=4 SV=1[more]
tr|A0A251NCG7|A0A251NCG7_PRUPE7.6e-4372.52Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G163800 PE=4 SV=1[more]
tr|A0A2P6RM46|A0A2P6RM46_ROSCH1.4e-4174.17Putative thioredoxin-disulfide reductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_... [more]
tr|C6T1G2|C6T1G2_SOYBN7.9e-4071.07Uncharacterized protein OS=Glycine max OX=3847 GN=100500348 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR011767GLR_AS
IPR011899Glutaredoxin_euk/vir
IPR002109Glutaredoxin
IPR014025Glutaredoxin_subgr
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16079-RACarg16079-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014025Glutaredoxin subgroupPRINTSPR00160GLUTAREDOXINcoord: 106..119
score: 47.02
coord: 92..105
score: 54.17
coord: 47..65
score: 40.57
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 47..109
e-value: 2.5E-16
score: 59.6
IPR002109GlutaredoxinPROSITEPS51354GLUTAREDOXIN_2coord: 35..131
score: 22.704
IPR011899Glutaredoxin, eukaryotic/virialTIGRFAMTIGR02180TIGR02180coord: 47..128
e-value: 2.6E-28
score: 96.1
NoneNo IPR availableGENE3DG3DSA:3.40.30.10coord: 28..131
e-value: 3.6E-35
score: 122.0
NoneNo IPR availablePANTHERPTHR10168GLUTAREDOXINcoord: 23..130
NoneNo IPR availablePANTHERPTHR10168:SF116GLUTAREDOXIN-C3coord: 23..130
NoneNo IPR availableCDDcd03419GRX_GRXh_1_2_likecoord: 46..127
e-value: 4.60986E-43
score: 137.671
IPR011767Glutaredoxin active sitePROSITEPS00195GLUTAREDOXIN_1coord: 49..64
IPR036249Thioredoxin-like superfamilySUPERFAMILYSSF52833Thioredoxin-likecoord: 36..129

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16079Cla014260Watermelon (97103) v1carwmB0756
Carg16079Csa6G504670Cucumber (Chinese Long) v2carcuB0776
Carg16079MELO3C007879Melon (DHL92) v3.5.1carmeB0751
Carg16079ClCG01G020060Watermelon (Charleston Gray)carwcgB0732
Carg16079CSPI06G31500Wild cucumber (PI 183967)carcpiB0794
Carg16079Cucsa.043320Cucumber (Gy14) v1carcgyB0850
Carg16079CmaCh07G004500Cucurbita maxima (Rimu)carcmaB1056
Carg16079CmoCh07G004470Cucurbita moschata (Rifu)carcmoB1029
Carg16079Lsi01G006290Bottle gourd (USVL1VR-Ls)carlsiB693
Carg16079Cp4.1LG19g09060Cucurbita pepo (Zucchini)carcpeB1065
Carg16079MELO3C007879.2Melon (DHL92) v3.6.1carmedB0766
Carg16079CsaV3_6G046820Cucumber (Chinese Long) v3carcucB0797
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16079Wax gourdcarwgoB0891
Carg16079Silver-seed gourdcarcarB426
Carg16079Silver-seed gourdcarcarB604
Carg16079Cucumber (Gy14) v2carcgybB0751
Carg16079Cucumber (Gy14) v2carcgybB0753
Carg16079Cucurbita maxima (Rimu)carcmaB1055
Carg16079Cucurbita moschata (Rifu)carcmoB1028
Carg16079Cucurbita pepo (Zucchini)carcpeB1064
Carg16079Cucurbita pepo (Zucchini)carcpeB1069
Carg16079Wild cucumber (PI 183967)carcpiB0792
Carg16079Cucumber (Chinese Long) v2carcuB0774
Carg16079Cucumber (Chinese Long) v3carcucB0795
Carg16079Bottle gourd (USVL1VR-Ls)carlsiB696
Carg16079Melon (DHL92) v3.6.1carmedB0764
Carg16079Watermelon (97103) v2carwmbB0791
Carg16079Watermelon (97103) v2carwmbB0793