Carg16065 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16065
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L7/L12
Location	Cucurbita_argyrosperma_scaffold_090 : 475545 .. 478180 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGTTTGGCGGCTTGCAAAACGCTGGCAAGAGTGGTTCTGGGGCGAAAGGCGGTGAAGAGAAGAAGGCGGAGAAGACGGCGTTTGATGTGAAGCTTGAAGCTTTTGATGCTGCGTCGAAGATCAAGGTCATTAAGGAAGTGCGAACGTTTACGAATTTGGGATTGAAGGAAGCTAAGGATTTGGTGGAGAAGGCGCCAACGCTTCTAAAGAAGGGGGTGACGAAAGAGGAAGCTGATACGATTATTGCCAAGATGAAGGAGGTTGGCGCCAAAGTTTCAATGGAGTGAGGTAATGTAGTCCTACTGTTTGCAAGTGTATTTTAGAACGAGTTACATGTTTCAAACTGTATGCCATGTGTATAGACCATGTTAGCCTATCTTAGTAATTGAGCATTCATCAAGACGTTATAATGAGTTTATCATGGCCATTGGGTATGTTTTGGGGTTGTAGTCAGGGTATGGATTCATGGATACGAAACCTGATAATCTTTAATTTTAGTTCCTATCCGTGGTAGCTTAGCAGAAGAATTTGATCCCAACTCCGGAGGACCTAATCTAGCTTGAGAGTTACAAGTATGATAATGAGTTTCTATAGAATGTTATATACTATGCCTGCGGTTCTCCTAACTTGAGGAGAGGTCCTTGATGAATTGGATTTGGGACGCAAAACTATACAGTTGAGGGTAGAAGATTATCCAGTTGTGTAAACTAGCCTGTAGCTACCAAATGGCTCGAGTGTCTGCTTTTTTTATCTTTCTTGGATAAGAAACACAATTCCTTAATCAATGAAGCAATAAGCATGCAAATGTGCCTATATAATATAACAGCTCAAGCCCACTGCTAGTAGATATTGTCCGCTTTAGCCAGTTAGCCGTTATAAGGAATGCTTTGTTTTCCTCTCCAACCGATGTGAGATCTCACAATCCATCCCCTTTGGGAGCCCAGCGTCCTCGCTGGCATACCGCCTGATGCCTGGCTCTTATACCATTTGTAATAGCCCTAGCCCACTGCTAGCAGATGTTGTCCGCTTTTGCTCGTTAGCTGTCAGCCTCATGATTTTAAAACGTGTCTGCTAGGGAGAGGTTTTCACACCTTTATAAGAAATGTTTTGTTCTCCTCTCCAACCAATTTGCGATCTGAGATGATTTGGAAAATGGGTTCTATAGTTTTTTCTGACATACTTGCTGTGCTTTTATTAACTCACCCTGAGCTAGAGAAATTCTAGGACTTTGAGGTACGGAAGTGTGTGCAGTTTGGAAGTGATCAGATTTATCCAGTCATGTAAGTGCAACCTAACCTGGAACTACACAATAGCCTGAGTATGTGCGTTTTTTTAAGGAACTAAAAAATAGATAAGAAACTTAAAGAGTTGATAATAGGTAGCAGATGAAGGTCCTTAGAATGCGATTCTTTGTTGAAATCTTAATTTTCTGTTGTTTGTTCATTTCATCCTCTTATGAAGATTTATGGCTGATGCCTATATGGTCCAATAAGTTTCTCTATCTTTTTTTTGGAGCAAAACAAATGTTAGTTGAGATAAATAAGATCATACAAAGTAGTGTTAAAAAAAAATCTTATTTCTATAATTTATATTCTAAAATATAAGTAATGTTAACAAAAAAAACCTTATCTAATAGTCATTGTAACATGAGGCAATGTGTTGATCTATTTTTTCCCTTCATAGTTTCATAAATGCCACAAAAGCTTTAGAACACGATGCTATGTGTAACAACTCAAGTCCACCGCTAGGAGATTGTCCACTTTAGCCCATTACGTAGCGCCGTTAGCCTCATGGTCTTAGAATGCATCTGCTAGGTAGAGGTTTCCACATTCTTATAAGAAATGCTTTGTTCCCCTCTCCAACCGATGTAGAATCTCACAATCCACCTCCCTCAAGAGCCAGCGTCCTAGCTGGCATGATAGTATGTTACCTCTCAAAAGCCTTATTTAATAGTCGTCGTAACTTTGAGCCTGTAGAGTGCCTATTGCCAATTCATGCAGCAGCATTACACTGTTTCAAGCTGCAGGGCCTATTCTATCTGTTACTCTGCATGCTTTATTTCTTATGATTTTAGCATGGCTACTTCATTCATCATCGTTCTTATTATAATCTGTGCAAGTCACTTAATTTTACTAAATTCCTCTGCAAATATGCAACAGTACAATTCAATAACATTGGGTAGAATCATGGTATCAGTAGTAGTTGGCATTACTATTTTGTAATTTCGTTTGTTTCTTTCACCATCAGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

mRNA sequence

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

Coding sequence (CDS)

ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTTGGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCTCCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTGCGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA

Protein sequence

MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGILRKIQSFYGTFQVRTAVEDI

Homology

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_023003672.1 (uncharacterized protein LOC111497194 [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYT+ASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTIASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_023518906.1 (uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSRVRRTFAQNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_022963245.1 (uncharacterized protein LOC111463515 [Cucurbita moschata])

HSP 1 Score: 193.7 bits (491), Expect = 3.8e-46
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MRHLRSISSHLS VRR FA NSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKP
Sbjct: 1   MRHLRSISSHLSWVRRTFAHNSASDSPSTCNLNLLGLERLTSFSLLNHRNYTVASPESKP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_022132430.1 (uncharacterized protein LOC111005287 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 4.6e-36
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR +S H SR+ R FAQ    DS ST +LNLLGL  L SSSLLNHRNYT ASPES+P
Sbjct: 1   MRYLRILSPHFSRICRTFAQTPCCDSSSTHSLNLLGLGSLASSSLLNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 108

[Close]

BLAST of Carg16065 vs. NCBI nr
Match: XP_008440773.1 (PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 5.1e-35
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+P
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG G
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTG 108

[Close]

BLAST of Carg16065 vs. TAIR10
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-12
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR ISSH SRV +         S  T         R +S  L   ++ + +SP ++ 
Sbjct: 1   MRNLRIISSHFSRVLK---------STET---------RSSSVQLFTIQSRSYSSPATQ- 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGI 110
             SE V+ IV+E+S LTLLE  DLTE+LR+KL++ ++PVMA MMPGM +
Sbjct: 61  --SENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSL 88

[Close]

BLAST of Carg16065 vs. TAIR10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-06
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 57  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPG 107
           E +  P++RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG
Sbjct: 62  EHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPG 111

[Close]

BLAST of Carg16065 vs. TrEMBL
Match: tr|A0A1S3B1Y6|A0A1S3B1Y6_CUCME (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-35
Identity = 83/108 (76.85%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+P
Sbjct: 1   MRNLRFFSSHFSRIRRTFAQNPSSVSPSTRHINLPGLETFASSSSVNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM +MMPG G
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTIMMPGTG 108

[Close]

BLAST of Carg16065 vs. TrEMBL
Match: tr|A0A0A0KMA8|A0A0A0KMA8_CUCSA (50S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR +S H SR+R+ FAQN +SDSPST ++N  GLE   S S +NHRNYT ASPES+P
Sbjct: 1   MRNLRILSPHFSRIRKTFAQNPSSDSPSTRHINFPGLETFASPSSVNHRNYTTASPESRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM 101
           APSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVM 100

[Close]

BLAST of Carg16065 vs. TrEMBL
Match: tr|A0A2R6S2K9|A0A2R6S2K9_ACTCH (50S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01032 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.5e-19
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNS---ASDSPSTCNLNLLGLERLTSSSLLNH-RNYTVASP 60
           MR+ R IS  LSR R I +QN       S  + +   + + R+ S    N  R YT ++ 
Sbjct: 1   MRYSRIISQSLSRHRTITSQNPKFLTKKSHISNSSTQISISRIQSWKYKNFAREYTSSAQ 60

Query: 61  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           E+KP+PSERV++IVDEISGLTLLEVADLTEVLR+KLDV +MPVMAVMMPGMG
Sbjct: 61  EAKPSPSERVSSIVDEISGLTLLEVADLTEVLRKKLDVSEMPVMAVMMPGMG 112

[Close]

BLAST of Carg16065 vs. TrEMBL
Match: tr|A0A061DFJ5|A0A061DFJ5_THECC (50S ribosomal protein L7/L12, putative OS=Theobroma cacao OX=3641 GN=TCM_000294 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNH---RNYTVASPE 60
           MR+LR  SSHL+R+++   QN    S             + S + +NH   RNYT  S E
Sbjct: 1   MRNLRLFSSHLTRIQKTLHQNPNISS------------SIQSLNKVNHTFSRNYTTPSQE 60

Query: 61  S-KPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG 109
           S K APS +V AIVDE+SGLTLLEV DLTEVLR+KLDVK+MP+MAVMMPGMG
Sbjct: 61  STKQAPSGKVAAIVDELSGLTLLEVMDLTEVLRQKLDVKEMPIMAVMMPGMG 100

[Close]

BLAST of Carg16065 vs. TrEMBL
Match: tr|A0A2P6RM38|A0A2P6RM38_ROSCH (Putative ribosomal protein L7/L12 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0100351 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-18
Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKP 60
           MR+LR IS HLSR+ +   QN           NL     L+S       +YT A+PE +P
Sbjct: 1   MRYLRFISPHLSRIHKTLPQNP----------NLHSRPYLSSHFA---ASYTTAAPEKRP 60

Query: 61  APSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGI 110
           AP E+V+AI DEISGLTLLEV+DLTEVLREKL +K+MP M +MMPGMGI
Sbjct: 61  APPEKVSAIADEISGLTLLEVSDLTEVLREKLGIKEMPAMMMMMPGMGI 96

The following BLAST results are available for this feature:

BLAST of Carg16065 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003672.1	3.1e-48	98.15	uncharacterized protein LOC111497194 [Cucurbita maxima]	[more]
XP_023518906.1	1.2e-47	98.15	uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo]	[more]
XP_022963245.1	3.8e-46	96.30	uncharacterized protein LOC111463515 [Cucurbita moschata]	[more]
XP_022132430.1	4.6e-36	80.56	uncharacterized protein LOC111005287 [Momordica charantia]	[more]
XP_008440773.1	5.1e-35	76.85	PREDICTED: 50S ribosomal protein L7/L12 [Cucumis melo]	[more]

BLAST of Carg16065 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36420.1	4.3e-12	43.12	Ribosomal protein L12 family protein	[more]
AT1G70190.1	4.6e-06	44.00	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

BLAST of Carg16065 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16065 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B1Y6\|A0A1S3B1Y6_CUCME	3.4e-35	76.85	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103485090 PE=3 SV=1	[more]
tr\|A0A0A0KMA8\|A0A0A0KMA8_CUCSA	5.0e-31	75.00	50S ribosomal protein L7/L12 OS=Cucumis sativus OX=3659 GN=Csa_6G504570 PE=3 SV=...	[more]
tr\|A0A2R6S2K9\|A0A2R6S2K9_ACTCH	7.5e-19	57.14	50S ribosomal protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=C...	[more]
tr\|A0A061DFJ5\|A0A061DFJ5_THECC	3.7e-18	56.25	50S ribosomal protein L7/L12, putative OS=Theobroma cacao OX=3641 GN=TCM_000294 ...	[more]
tr\|A0A2P6RM38\|A0A2P6RM38_ROSCH	3.7e-18	55.05	Putative ribosomal protein L7/L12 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g01...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036235	Ribosomal_L7/L12_oligo_N_sf
IPR008932	Ribosomal_L7/L12_oligo

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16065-RA	Carg16065-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 66..106 e-value: 1.0E-11 score: 44.2
None	No IPR available	GENE3D	G3DSA:1.20.5.710		coord: 66..110 e-value: 2.7E-6 score: 29.1
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 66..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16065	Cla014250	Watermelon (97103) v1	carwmB0756
Carg16065	Csa6G504570	Cucumber (Chinese Long) v2	carcuB0776
Carg16065	MELO3C007869	Melon (DHL92) v3.5.1	carmeB0751
Carg16065	ClCG01G019960	Watermelon (Charleston Gray)	carwcgB0732
Carg16065	CSPI06G31400	Wild cucumber (PI 183967)	carcpiB0794
Carg16065	Cucsa.043210	Cucumber (Gy14) v1	carcgyB0850
Carg16065	CmaCh03G007150	Cucurbita maxima (Rimu)	carcmaB1055
Carg16065	CmoCh03G007420	Cucurbita moschata (Rifu)	carcmoB1028
Carg16065	Lsi01G006400	Bottle gourd (USVL1VR-Ls)	carlsiB693
Carg16065	Cp4.1LG10g00500	Cucurbita pepo (Zucchini)	carcpeB1064
Carg16065	Cp4.1LG19g09170	Cucurbita pepo (Zucchini)	carcpeB1065
Carg16065	CsGy6G030910	Cucumber (Gy14) v2	carcgybB0753
Carg16065	MELO3C007869.2	Melon (DHL92) v3.6.1	carmedB0766
Carg16065	CsaV3_6G046720	Cucumber (Chinese Long) v3	carcucB0797
Carg16065	Cla97C01G019370	Watermelon (97103) v2	carwmbB0791
Carg16065	Bhi03G000683	Wax gourd	carwgoB0891

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16065	Carg00615	Silver-seed gourd	carcarB426

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16065	Wax gourd	carwgoB0892
Carg16065	Silver-seed gourd	carcarB123
Carg16065	Silver-seed gourd	carcarB603
Carg16065	Silver-seed gourd	carcarB604
Carg16065	Cucumber (Gy14) v2	carcgybB0751
Carg16065	Cucumber (Gy14) v2	carcgybB0752
Carg16065	Cucumber (Gy14) v1	carcgyB0853
Carg16065	Cucurbita maxima (Rimu)	carcmaB1053
Carg16065	Cucurbita maxima (Rimu)	carcmaB1054
Carg16065	Cucurbita maxima (Rimu)	carcmaB1056
Carg16065	Cucurbita moschata (Rifu)	carcmoB1026
Carg16065	Cucurbita moschata (Rifu)	carcmoB1027
Carg16065	Cucurbita moschata (Rifu)	carcmoB1029
Carg16065	Cucurbita pepo (Zucchini)	carcpeB1066
Carg16065	Cucurbita pepo (Zucchini)	carcpeB1067
Carg16065	Cucurbita pepo (Zucchini)	carcpeB1069
Carg16065	Wild cucumber (PI 183967)	carcpiB0792
Carg16065	Wild cucumber (PI 183967)	carcpiB0793
Carg16065	Cucumber (Chinese Long) v2	carcuB0774
Carg16065	Cucumber (Chinese Long) v2	carcuB0775
Carg16065	Cucumber (Chinese Long) v3	carcucB0795
Carg16065	Cucumber (Chinese Long) v3	carcucB0796
Carg16065	Bottle gourd (USVL1VR-Ls)	carlsiB696
Carg16065	Bottle gourd (USVL1VR-Ls)	carlsiB694
Carg16065	Melon (DHL92) v3.5.1	carmeB0750
Carg16065	Melon (DHL92) v3.6.1	carmedB0764
Carg16065	Melon (DHL92) v3.6.1	carmedB0765
Carg16065	Watermelon (Charleston Gray)	carwcgB0733
Carg16065	Watermelon (97103) v1	carwmB0755
Carg16065	Watermelon (97103) v2	carwmbB0792
Carg16065	Watermelon (97103) v2	carwmbB0793