Carg15939 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15939
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box/lrr-repeat protein 4
Location	Cucurbita_argyrosperma_scaffold_080 : 702946 .. 703256 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGAGGCTGGTTAGGGGGCGAAGTCTGACTGACCCTAATTATGCATTAACGGACATATGTATCTTTGAGTATCAAAGTACACTCTCAGATTAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGCCAAATGGTCTATTGTCCTGGCATCACCGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTTCCTACCTTTGCGTCGACCTCTAG

mRNA sequence

ATGGCAATGAGGCTGTACACTCTCAGATTAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGCCAAATGGTCTATTGTCCTGGCATCACCGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTTCCTACCTTTGCGTCGACCTCTAG

Coding sequence (CDS)

ATGGCAATGAGGCTGTACACTCTCAGATTAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGCCAAATGGTCTATTGTCCTGGCATCACCGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTTCCTACCTTTGCGTCGACCTCTAG

Protein sequence

MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL

Homology

[Close]

BLAST of Carg15939 vs. NCBI nr
Match: PNR45541.1 (hypothetical protein PHYPA_015312, partial [Physcomitrella patens])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWK 60
           + + LY  +++D GL  LV  C  +E C MVYCP +T+  +A V   C S+KK++VEKWK
Sbjct: 54  VCLLLYYQKISDVGLRQLVSNCQTIELCHMVYCPCVTSVNMAIVSGGCNSLKKVVVEKWK 113

Query: 61  VSERTKRRAGSVISYLCVDL 81
           + +  +RR  +++  LC+DL
Sbjct: 114 IIDGIQRRHVTILIELCIDL 133

[Close]

BLAST of Carg15939 vs. NCBI nr
Match: POE98043.1 (f-box/lrr-repeat protein 4 [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 23  TMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVS 63
           ++LESC MVYCPGITAAGVATVVSSC ++KK+LVEKWK++
Sbjct: 473 SLLESCHMVYCPGITAAGVATVVSSCTNIKKVLVEKWKLA 512

[Close]

BLAST of Carg15939 vs. NCBI nr
Match: POE98042.1 (f-box/lrr-repeat protein 4 [Quercus suber])

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 23  TMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVS 63
           ++LESC MVYCPGITAAGVATVVSSC ++KK+LVEKWK++
Sbjct: 458 SLLESCHMVYCPGITAAGVATVVSSCTNIKKVLVEKWKLA 497

[Close]

BLAST of Carg15939 vs. NCBI nr
Match: XP_023000156.1 (F-box/LRR-repeat protein 4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 51  VKKILVEKWKVSERTKRRAGSVISYLCVDL 81
           VKKILVEKWKVSERTKRRAGSVISYLCVDL
Sbjct: 576 VKKILVEKWKVSERTKRRAGSVISYLCVDL 605

[Close]

BLAST of Carg15939 vs. NCBI nr
Match: XP_023000157.1 (F-box/LRR-repeat protein 4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 51  VKKILVEKWKVSERTKRRAGSVISYLCVDL 81
           VKKILVEKWKVSERTKRRAGSVISYLCVDL
Sbjct: 479 VKKILVEKWKVSERTKRRAGSVISYLCVDL 508

[Close]

BLAST of Carg15939 vs. TAIR10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-09
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 51  VKKILVEKWKVSERTKRRAGSVISYLCVDL 81
           +KK+L+EKWKV+ERT RRAGSVISYLC+DL
Sbjct: 581 IKKVLIEKWKVTERTTRRAGSVISYLCMDL 610

[Close]

BLAST of Carg15939 vs. TAIR10
Match: AT3G50080.1 (VIER F-box proteine 2)

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 24/78 (30.77%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 3   MRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVS 62
           +RL  L++TD GL   + +C+ LE+  +V  P  +  G+A+VV  C  ++K+ ++ W+V 
Sbjct: 262 IRLERLQVTDIGLFG-ISKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWRVK 321

Query: 63  ERTKRRAGSVISYLCVDL 81
               +   SV  + C++L
Sbjct: 322 RIGDQGLMSVAKH-CLNL 337

[Close]

BLAST of Carg15939 vs. Swiss-Prot
Match: sp|Q9C5D2|FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 51  VKKILVEKWKVSERTKRRAGSVISYLCVDL 81
           +KK+L+EKWKV+ERT RRAGSVISYLC+DL
Sbjct: 581 IKKVLIEKWKVTERTTRRAGSVISYLCMDL 610

[Close]

BLAST of Carg15939 vs. TrEMBL
Match: tr|A0A2K1JVI6|A0A2K1JVI6_PHYPA (Uncharacterized protein (Fragment) OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPA_015312 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-11
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWK 60
           + + LY  +++D GL  LV  C  +E C MVYCP +T+  +A V   C S+KK++VEKWK
Sbjct: 54  VCLLLYYQKISDVGLRQLVSNCQTIELCHMVYCPCVTSVNMAIVSGGCNSLKKVVVEKWK 113

Query: 61  VSERTKRRAGSVISYLCVDL 81
           + +  +RR  +++  LC+DL
Sbjct: 114 IIDGIQRRHVTILIELCIDL 133

[Close]

BLAST of Carg15939 vs. TrEMBL
Match: tr|A0A2P4KYH3|A0A2P4KYH3_QUESU (F-box/lrr-repeat protein 4 OS=Quercus suber OX=58331 GN=CFP56_39486 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 23  TMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVS 63
           ++LESC MVYCPGITAAGVATVVSSC ++KK+LVEKWK++
Sbjct: 458 SLLESCHMVYCPGITAAGVATVVSSCTNIKKVLVEKWKLA 497

[Close]

BLAST of Carg15939 vs. TrEMBL
Match: tr|A0A2P4KYF2|A0A2P4KYF2_QUESU (F-box/lrr-repeat protein 4 OS=Quercus suber OX=58331 GN=CFP56_39486 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-09
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 23  TMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVS 63
           ++LESC MVYCPGITAAGVATVVSSC ++KK+LVEKWK++
Sbjct: 473 SLLESCHMVYCPGITAAGVATVVSSCTNIKKVLVEKWKLA 512

[Close]

BLAST of Carg15939 vs. TrEMBL
Match: tr|A0A0A0KCP6|A0A0A0KCP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062270 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 52  KKILVEKWKVSERTKRRAGSVISYLCVDL 81
           KKIL+EKWKVSERTKRRAGSVISYLCVDL
Sbjct: 574 KKILIEKWKVSERTKRRAGSVISYLCVDL 602

[Close]

BLAST of Carg15939 vs. TrEMBL
Match: tr|A0A2P2KM93|A0A2P2KM93_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 52  KKILVEKWKVSERTKRRAGSVISYLCVDL 81
           KK+LVEKWKVSERTKRRAGS+ISYLCVDL
Sbjct: 590 KKVLVEKWKVSERTKRRAGSIISYLCVDL 618

The following BLAST results are available for this feature:

BLAST of Carg15939 vs. NCBI nr


Match Name	E-value	Identity	Description
PNR45541.1	1.2e-10	41.25	hypothetical protein PHYPA_015312, partial [Physcomitrella patens]	[more]
POE98043.1	3.9e-09	77.50	f-box/lrr-repeat protein 4 [Quercus suber]	[more]
POE98042.1	3.9e-09	77.50	f-box/lrr-repeat protein 4 [Quercus suber]	[more]
XP_023000156.1	6.2e-07	100.00	F-box/LRR-repeat protein 4 isoform X1 [Cucurbita maxima]	[more]
XP_023000157.1	6.2e-07	100.00	F-box/LRR-repeat protein 4 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg15939 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15475.1	6.2e-09	80.00	F-box/RNI-like superfamily protein	[more]
AT3G50080.1	6.0e-04	30.77	VIER F-box proteine 2	[more]

BLAST of Carg15939 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C5D2\|FBL4_ARATH	1.1e-07	80.00	F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1	[more]

BLAST of Carg15939 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K1JVI6\|A0A2K1JVI6_PHYPA	8.0e-11	41.25	Uncharacterized protein (Fragment) OS=Physcomitrella patens subsp. patens OX=321...	[more]
tr\|A0A2P4KYH3\|A0A2P4KYH3_QUESU	2.6e-09	77.50	F-box/lrr-repeat protein 4 OS=Quercus suber OX=58331 GN=CFP56_39486 PE=4 SV=1	[more]
tr\|A0A2P4KYF2\|A0A2P4KYF2_QUESU	2.6e-09	77.50	F-box/lrr-repeat protein 4 OS=Quercus suber OX=58331 GN=CFP56_39486 PE=4 SV=1	[more]
tr\|A0A0A0KCP6\|A0A0A0KCP6_CUCSA	1.6e-06	96.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062270 PE=4 SV=1	[more]
tr\|A0A2P2KM93\|A0A2P2KM93_RHIMU	2.0e-06	93.10	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15939-RA	Carg15939-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 3..78 e-value: 1.2E-8 score: 35.7
None	No IPR available	PANTHER	PTHR45517	FAMILY NOT NAMED	coord: 9..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15939	Watermelon (97103) v2	carwmbB0333
Carg15939	Watermelon (97103) v2	carwmbB0334
Carg15939	Wax gourd	carwgoB0408
Carg15939	Wax gourd	carwgoB0411
Carg15939	Silver-seed gourd	carcarB080
Carg15939	Silver-seed gourd	carcarB347
Carg15939	Cucumber (Gy14) v2	carcgybB0333
Carg15939	Cucumber (Gy14) v2	carcgybB0334
Carg15939	Cucumber (Gy14) v1	carcgyB0383
Carg15939	Cucumber (Gy14) v1	carcgyB0384
Carg15939	Cucurbita maxima (Rimu)	carcmaB0453
Carg15939	Cucurbita maxima (Rimu)	carcmaB0455
Carg15939	Cucurbita maxima (Rimu)	carcmaB0457
Carg15939	Cucurbita maxima (Rimu)	carcmaB0458
Carg15939	Cucurbita moschata (Rifu)	carcmoB0444
Carg15939	Cucurbita moschata (Rifu)	carcmoB0446
Carg15939	Cucurbita moschata (Rifu)	carcmoB0448
Carg15939	Cucurbita moschata (Rifu)	carcmoB0449
Carg15939	Cucurbita pepo (Zucchini)	carcpeB0450
Carg15939	Cucurbita pepo (Zucchini)	carcpeB0453
Carg15939	Cucurbita pepo (Zucchini)	carcpeB0454
Carg15939	Cucurbita pepo (Zucchini)	carcpeB0456
Carg15939	Wild cucumber (PI 183967)	carcpiB0355
Carg15939	Wild cucumber (PI 183967)	carcpiB0356
Carg15939	Cucumber (Chinese Long) v2	carcuB0350
Carg15939	Cucumber (Chinese Long) v2	carcuB0351
Carg15939	Cucumber (Chinese Long) v3	carcucB0355
Carg15939	Cucumber (Chinese Long) v3	carcucB0356
Carg15939	Bottle gourd (USVL1VR-Ls)	carlsiB296
Carg15939	Bottle gourd (USVL1VR-Ls)	carlsiB298
Carg15939	Melon (DHL92) v3.5.1	carmeB0327
Carg15939	Melon (DHL92) v3.5.1	carmeB0332
Carg15939	Melon (DHL92) v3.6.1	carmedB0336
Carg15939	Melon (DHL92) v3.6.1	carmedB0340
Carg15939	Watermelon (Charleston Gray)	carwcgB0317
Carg15939	Watermelon (Charleston Gray)	carwcgB0318
Carg15939	Watermelon (97103) v1	carwmB0316
Carg15939	Watermelon (97103) v1	carwmB0317