Carg15938 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15938
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box/LRR-repeat protein 4
Location	Cucurbita_argyrosperma_scaffold_080 : 697627 .. 700081 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCTGAGCTCTTTGTTCAGCTCCTTGCTCGCCGTTTTGTCAATATCAGAAATGTCCACATTGACGAACGCTTGGCGATTTCTCTCCCCCTTCATTCAGTAAGCCATCAATGTTCACTTCGATTGCCTACTTGAAATTCAATTAGGTTTGTGGATGATGCTAATTTTCAGTTTGATGTGCTTAGAAATGGAATTTTGTGTGTTGGTTTGATTTTACGAGTGTATTATGTGTAATTGCAGTATTTGATTCGCTTATCGAGTGTTCTGGAGAGTGAACTGGAATATGACTATATCAAAAAGTATTGTTGGGAAACAGTGGTGTGAATTTAGGTAAGGGGAAAAGGAGAAAGGAAATTGGCAGAGTGGTTTGATGTTACTTAGGCGATTGTACGCATTTGATTTAGGTCAACTATTCTTTTAGACCTGAGGGCTCAGGAAAAAGTCTTATTCAGGGAGGAGAAATTCACTATTAAACTTGTGTGAGTAAATACTTTGAAATATTAATTCCATCTAATCAAACCCTAAACTTGAATGAAATTAACTTTGTTTGTTGAGTTACTATCTTCTAGATATACAGATAGGTGTGACATTTTCTATTTCTCAGGTGCCGATTTTGTTGCGTCAAGGTTTCCACGTGCTGGGTCTGAATGTTCTTATAACTACTAAGTTGTCTGGATTTAGGATATTGTGTTGGTTGAGTTTTGTATGATATATCATTTGTTATTGGGTCATCTTTTAGCTTGATTTTGAGAAGAGGATATTAATTCCACTTCTCGCTCAAGTTTAGGATTTAATTTAATGAAACTAAAGTTTTTAAGGTTCAAATTGAATCAAAGCATCTCAAAGATCTTGTCAGAATTTTACTGGTAATGTCTATGCAGGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCACACAATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAATCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGTAATTCTTTGTTTAGTTTCCTATTTTAAGGAAGAAAAATCCCTAAATCAGTGAAACGTGAATTTTTAATGTTTAGTTTCCTAATTTTGATATGCTACAATACATTTAATGCTCCTTTTTTTCATTAAAAAAACCCATATAATTGAGAATTATGCCCCTGGTCCGTTACTGTTGCAAATCTACGGCATTCTGTTATTATCTTTTTGAAGCTCATTACCAGTGGTAGGCATGTCATGCACTTTCTTTTTTGTTTTTTTACCTTCTTCGTTTCTTAATTGTGGGTGTCCATGAAGGGTGACGCCTAACCAATTGGTGACAGAAGGTAGGAAGGTGGCCATCATAGTGTGGCATGTCCGTCCTTACATGGTGTCATTTAGAATTTTAGATATCCAAATGGGTTTAGAAAAGGCAGATGACCAACCTGCATATACATGATCGTCTCTTATTCAAGTACTGCCGTCACAAGTTCTTTTATGTGAATAATGGCTTTACATATTAGCTGAATGTTTTTCTGTGTCAGGCTTTTGACTGAAATTTTTTAACGATATGGGTTTTCTTCACCTGGAATTGCTAGCTGAAGTCTAGCTTGGCTGAACCTGAATTTATTTTAAGACTTCCTATGTCAGGACGCTTCTAAGTTCTATTTATAATAATCGTAGTTTCCCCAATGCATTACACCCACGCTTCTTTGTCTGAAGGTTACTATATGTAATGTTCTTTCTGAAAAGTATTTATTCAGTTCTGATATTTTCTAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACGTGGTTGTGGGAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTTTGTCGCTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGTAA

mRNA sequence

ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCTGAGCTCTTTGTTCAGCTCCTTGCTCGCCGTTTTGTCAATATCAGAAATGTCCACATTGACGAACGCTTGGCGATTTCTCTCCCCCTTCATTCAGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCACACAATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAATCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACGTGGTTGTGGGAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTTTGTCGCTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGTAA

Coding sequence (CDS)

ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCTGAGCTCTTTGTTCAGCTCCTTGCTCGCCGTTTTGTCAATATCAGAAATGTCCACATTGACGAACGCTTGGCGATTTCTCTCCCCCTTCATTCAGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCACACAATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAATCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACGTGGTTGTGGGAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTTTGTCGCTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGTAA

Protein sequence

MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKYLESLSLDSEIIHNKGVLSVAQGCPLLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDK

Homology

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BLAST of Carg15938 vs. NCBI nr
Match: XP_023514735.1 (LOW QUALITY PROTEIN: F-box/LRR-repeat protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477.2 bits (1227), Expect = 4.0e-131
Identity = 258/260 (99.23%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL
Sbjct: 62  MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 121

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSH+ATDNTGAEGALESS
Sbjct: 122 FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESS 181

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
           YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX
Sbjct: 182 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 241

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
           XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY
Sbjct: 242 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 301

Query: 241 LESLSLDSEIIHNKGVLSVA 261
           LES+SLDSEIIHNKGVLSVA
Sbjct: 302 LESMSLDSEIIHNKGVLSVA 321

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BLAST of Carg15938 vs. NCBI nr
Match: XP_022930250.1 (F-box/LRR-repeat protein 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 476.1 bits (1224), Expect = 9.0e-131
Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL
Sbjct: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSH+ATDNTGAEGALESS
Sbjct: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESS 120

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
           YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX
Sbjct: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
           XXXXXXXXXXXXXRFCEGLTDTGLVELA GCGKSLKTFGITACAKITDVSLEAVGMHCKY
Sbjct: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELAHGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240

Query: 241 LESLSLDSEIIHNKGVLSVA 261
           LESLSLDSEIIHNKGVLSVA
Sbjct: 241 LESLSLDSEIIHNKGVLSVA 260

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BLAST of Carg15938 vs. NCBI nr
Match: XP_023000156.1 (F-box/LRR-repeat protein 4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 476.1 bits (1224), Expect = 9.0e-131
Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL
Sbjct: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FV LLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSH+ATDNTGAEGALESS
Sbjct: 61  FVHLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESS 120

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
           YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX
Sbjct: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
           XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY
Sbjct: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240

Query: 241 LESLSLDSEIIHNKGVLSVA 261
           LESLSLDSEIIHNKGVLSVA
Sbjct: 241 LESLSLDSEIIHNKGVLSVA 260

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BLAST of Carg15938 vs. NCBI nr
Match: XP_023548821.1 (F-box/LRR-repeat protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439.9 bits (1130), Expect = 7.1e-120
Identity = 216/260 (83.08%), Postives = 233/260 (89.62%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH WINT+LPDELI+EIFRCLDSKLSRDACSLVC+RWLKLERLSRTTLRIGATGSP+L
Sbjct: 21  MRGHGWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDL 80

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVN++NVHIDERLAISLPLHSGRRRRNEVM LPF SH+AT NTG EGA ESS
Sbjct: 81  FVQLLARRFVNVKNVHIDERLAISLPLHSGRRRRNEVMRLPFKSHHATHNTGTEGAPESS 140

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
            LSDAGLIALS+GFPNLEKLSLIWCSNISSQGLTSLAEKC+FLKSLDLQGCYVGD     
Sbjct: 141 CLSDAGLIALSIGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAA 200

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
                        RFCEGLTD GLVEL+RGCGKSLK+FG+ ACAKITDV+LEAVGMHCKY
Sbjct: 201 VGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVALEAVGMHCKY 260

Query: 241 LESLSLDSEIIHNKGVLSVA 261
           LES+SLDSE+IH+KGVLS+A
Sbjct: 261 LESISLDSEVIHDKGVLSLA 280

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BLAST of Carg15938 vs. NCBI nr
Match: XP_023006372.1 (LOW QUALITY PROTEIN: F-box/LRR-repeat protein 4-like [Cucurbita maxima])

HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 216/260 (83.08%), Postives = 232/260 (89.23%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH WINT+LPDELI+EIFRCLDSKLSRDACSLVC+RWLKLERLSRTTLRIGATGSP+L
Sbjct: 71  MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDL 130

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVN++NVHIDERLAISLPLHSGRRRRN+ M LPF SH+AT NTG EGA ESS
Sbjct: 131 FVQLLARRFVNVKNVHIDERLAISLPLHSGRRRRNDGMRLPFKSHHATLNTGTEGAPESS 190

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
            LSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKC+FLKSLDLQGCYVGD     
Sbjct: 191 CLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAA 250

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
                        RFCEGLTD GLVEL+RGCGKSLK+FG+ ACAKITDVSLEAVGMHCKY
Sbjct: 251 VGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVSLEAVGMHCKY 310

Query: 241 LESLSLDSEIIHNKGVLSVA 261
           LES+SLDSE+IH+KGVLS+A
Sbjct: 311 LESISLDSEVIHDKGVLSLA 330

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BLAST of Carg15938 vs. TAIR10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein)

HSP 1 Score: 265.0 bits (676), Expect = 5.7e-71
Identity = 143/253 (56.52%), Postives = 170/253 (67.19%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH  IN  LP+ELI+EIFR L+SK +RDACSLVCKRWL LER SRTTLRIGA+ SP+ 
Sbjct: 1   MRGHDRINNCLPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDD 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLP----LHSGRRRRNEVMCLPFNSHNATDNT--GAE 120
           F+ LL+RRF+ I ++H+DER+++SLP                         TD T  GAE
Sbjct: 61  FISLLSRRFLYITSIHVDERISVSLPSXXXXXXXXXXXXXXXXXXXXXXXLTDKTHSGAE 120

Query: 121 GALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVG 180
             +ESS L+D GL AL+ GFP +E LSLIWC N+SS GL SLA+KC  LKSLDLQGCYVG
Sbjct: 121 N-VESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVG 180

Query: 181 DXXXXXXXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAV 240
           D                  RFCEGLTD G+++L  GC KSLK+ G+ A AKITD+SLEAV
Sbjct: 181 DQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAV 240

Query: 241 GMHCKYLESLSLD 248
           G HCK LE L LD
Sbjct: 241 GSHCKLLEVLYLD 252

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BLAST of Carg15938 vs. TAIR10
Match: AT3G26810.1 (auxin signaling F-box 2)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-12
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 0


Query: 12  PDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVN 71
           PDE+I  +F  + S   R+A SLVCK W K+ER SR  + IG      +  + L RRF  
Sbjct: 5   PDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIG--NCYAINPERLLRRFPC 64

Query: 72  IRNVHIDERLAIS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALESSYLSDAG 131
           ++++ +  +   +    +P   G         LP+    A    G E   L+   ++D  
Sbjct: 65  LKSLTLKGKPHFADFNLVPHEWGG------FVLPWIEALARSRVGLEELRLKRMVVTDES 124

Query: 132 LIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
           L  LS  F N + L L+ C   ++ GL S+A  CR L+ LDLQ   + D
Sbjct: 125 LELLSRSFVNFKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDD 165

[Close]

BLAST of Carg15938 vs. TAIR10
Match: AT1G12820.1 (auxin signaling F-box 3)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-11
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 12  PDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVN 71
           PDE+I  +F  + S   R++ SLVCK W K+ER SR  + IG      +  + L RRF  
Sbjct: 5   PDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIG--NCYAINPERLIRRFPC 64

Query: 72  IRNVHIDERLAIS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALESSYLSDAG 131
           ++++ +  +   +    +P   G          P+    A    G E   L+   ++D  
Sbjct: 65  LKSLTLKGKPHFADFNLVPHEWGG------FVHPWIEALARSRVGLEELRLKRMVVTDES 124

Query: 132 LIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
           L  LS  F N + L L+ C   ++ GL S+A  CR L+ LDLQ   + D
Sbjct: 125 LDLLSRSFANFKSLVLVSCEGFTTDGLASIAANCRHLRELDLQENEIDD 165

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BLAST of Carg15938 vs. TAIR10
Match: AT5G51370.2 (RNI-like superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-10
Identity = 70/240 (29.17%), Postives = 106/240 (44.17%), Query Frame = 0


Query: 11  LPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFV 70
           L D L+++I   L    S D  SLVCKRWL L+     +L++       L  + L  RF 
Sbjct: 32  LSDSLLLKIIEKLPESQSNDV-SLVCKRWLNLQGQRLRSLKL--LDFDFLLSERLTTRFP 91

Query: 71  NIRNVHIDERLAISLP-LHSGRRRRNEVMCLPFNSHNATDNTGAEGALESSYLSDAGLIA 130
           N+   H+D   A   P ++SG    ++ +    +S ++      E  L S  + D GL  
Sbjct: 92  NL--THVDLVNACMNPRVNSGILFCHKSISFHLSSDSSNWEFLEENLLHSDVI-DRGLRI 151

Query: 131 LSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGC---YVGDXXXXXXXXXXX 190
           LS    +L  L +I   N S  GL SLA  C  L+ L+L  C    +             
Sbjct: 152 LSRESFDLLNLKVI---NASELGLLSLAGDCSDLQELELHKCNDNLLHGIAACKNLKGLR 211

Query: 191 XXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKYLESLSL 247
                   +   ++D GL  LA+GC +SL    ++ C    D  ++A+G  C+ LE LS+
Sbjct: 212 LVGSVDGLYSSSVSDIGLTFLAQGC-RSLVKLELSGCEGSFD-GIKAIGQCCEVLEELSI 260

[Close]

BLAST of Carg15938 vs. TAIR10
Match: AT5G49980.1 (auxin F-box protein 5)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 23  LDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVNIRNVHIDERLA 82
           LDS+  R+A SLVCK W ++E L+R+ + IG      L    L +RF  +R++ +  +  
Sbjct: 66  LDSRCDRNAASLVCKSWWRVEALTRSEVFIG--NCYALSPARLTQRFKRVRSLVLKGKPR 125

Query: 83  IS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEGA-LESSYLSDAGLIALSVGFPNL 142
            +    +P   G          P+ S  A      E   L+  +++D  L  L+  FP  
Sbjct: 126 FADFNLMPPDWGAN------FAPWVSTMAQAYPCLEKVDLKRMFVTDDDLALLADSFPGF 185

Query: 143 EKLSLIWCSNISSQGLTSLAEKCRFLKSLDL 169
           ++L L+ C    + G++ +A KCR LK LDL
Sbjct: 186 KELILVCCEGFGTSGISIVANKCRKLKVLDL 208

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BLAST of Carg15938 vs. Swiss-Prot
Match: sp|Q9C5D2|FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.0e-69
Identity = 143/253 (56.52%), Postives = 170/253 (67.19%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH  IN  LP+ELI+EIFR L+SK +RDACSLVCKRWL LER SRTTLRIGA+ SP+ 
Sbjct: 1   MRGHDRINNCLPEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDD 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLP----LHSGRRRRNEVMCLPFNSHNATDNT--GAE 120
           F+ LL+RRF+ I ++H+DER+++SLP                         TD T  GAE
Sbjct: 61  FISLLSRRFLYITSIHVDERISVSLPSXXXXXXXXXXXXXXXXXXXXXXXLTDKTHSGAE 120

Query: 121 GALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVG 180
             +ESS L+D GL AL+ GFP +E LSLIWC N+SS GL SLA+KC  LKSLDLQGCYVG
Sbjct: 121 N-VESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVG 180

Query: 181 DXXXXXXXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAV 240
           D                  RFCEGLTD G+++L  GC KSLK+ G+ A AKITD+SLEAV
Sbjct: 181 DQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAV 240

Query: 241 GMHCKYLESLSLD 248
           G HCK LE L LD
Sbjct: 241 GSHCKLLEVLYLD 252

[Close]

BLAST of Carg15938 vs. Swiss-Prot
Match: sp|Q2R3K5|TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-11
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 0


Query: 12  PDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVN 71
           P+E++  I   L S   R+A SLVC+ W ++ERLSR ++ +    +     + +  RF  
Sbjct: 5   PEEVVEHILGFLASHRDRNAVSLVCREWYRVERLSRRSVLVRNCYAAR--PERVHARFPG 64

Query: 72  IRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALESSYLSDAGLIAL 131
           +R++ +  R    +P   G   R      P+ +       G E   L+   ++D  L  L
Sbjct: 65  LRSLSVKGRPRF-VPAGWGAAAR------PWVAACVAACPGLEELRLKRMVVTDGCLKLL 124

Query: 132 SVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
           +  FPNL+ L L+ C   S+ GL ++A  CRF+K LDLQ   V D
Sbjct: 125 ACSFPNLKSLVLVGCQGFSTDGLATVATNCRFMKELDLQESLVED 160

[Close]

BLAST of Carg15938 vs. Swiss-Prot
Match: sp|Q9LW29|AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-11
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = 0


Query: 12  PDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVN 71
           PDE+I  +F  + S   R+A SLVCK W K+ER SR  + IG      +  + L RRF  
Sbjct: 5   PDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIG--NCYAINPERLLRRFPC 64

Query: 72  IRNVHIDERLAIS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALESSYLSDAG 131
           ++++ +  +   +    +P   G         LP+    A    G E   L+   ++D  
Sbjct: 65  LKSLTLKGKPHFADFNLVPHEWGG------FVLPWIEALARSRVGLEELRLKRMVVTDES 124

Query: 132 LIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
           L  LS  F N + L L+ C   ++ GL S+A  CR L+ LDLQ   + D
Sbjct: 125 LELLSRSFVNFKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDD 165

[Close]

BLAST of Carg15938 vs. Swiss-Prot
Match: sp|Q9LPW7|AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 12  PDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARRFVN 71
           PDE+I  +F  + S   R++ SLVCK W K+ER SR  + IG      +  + L RRF  
Sbjct: 5   PDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIG--NCYAINPERLIRRFPC 64

Query: 72  IRNVHIDERLAIS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALESSYLSDAG 131
           ++++ +  +   +    +P   G          P+    A    G E   L+   ++D  
Sbjct: 65  LKSLTLKGKPHFADFNLVPHEWGG------FVHPWIEALARSRVGLEELRLKRMVVTDES 124

Query: 132 LIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
           L  LS  F N + L L+ C   ++ GL S+A  CR L+ LDLQ   + D
Sbjct: 125 LDLLSRSFANFKSLVLVSCEGFTTDGLASIAANCRHLRELDLQENEIDD 165

[Close]

BLAST of Carg15938 vs. Swiss-Prot
Match: sp|Q7XVM8|TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 50/171 (29.24%), Postives = 78/171 (45.61%), Query Frame = 0


Query: 9   TILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVQLLARR 68
           T  P+E++  IF  L ++  R+  SLVCK W ++ERLSR  + +G      +    +A R
Sbjct: 2   TYFPEEVVEHIFSFLPAQRDRNTVSLVCKVWYEIERLSRRGVFVG--NCYAVRAGRVAAR 61

Query: 69  FVNIRNVHIDERLAIS----LPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESSYLSD 128
           F N+R + +  +   +    +P   G      +       H        E  ++   +SD
Sbjct: 62  FPNVRALTVKGKPHFADFNLVPPDWGGYAGPWIEAAARGCHGL-----EELRMKRMVVSD 121

Query: 129 AGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 176
             L  L+  FP    L LI C   S+ GL ++A  C+ L+ LDLQ   V D
Sbjct: 122 ESLELLARSFPRFRALVLISCEGFSTDGLAAVASHCKLLRELDLQENEVED 165

[Close]

BLAST of Carg15938 vs. TrEMBL
Match: tr|A0A0A0KCP6|A0A0A0KCP6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062270 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 4.1e-108
Identity = 202/256 (78.91%), Postives = 214/256 (83.59%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH WINT+LPDELI+EIFRCLDSKLSRDACSLVC+RWLKLERLSRTTLRIGATGSP+L
Sbjct: 1   MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVN+RNVHIDERLAIS  LH  RRRR E   LP+   +  DNTGAEG L+SS
Sbjct: 61  FVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEATRLPY---HGADNTGAEGVLDSS 120

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
            LSDAGLIALSVGFPNLEKLSLIWCSNISS GLTSLAEKCRFLKSL+LQGCYVGD     
Sbjct: 121 CLSDAGLIALSVGFPNLEKLSLIWCSNISSHGLTSLAEKCRFLKSLELQGCYVGDQGVAA 180

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
                        RFCEGLTD GLV LARG GKSLK FGI AC KITDVSLE+VG+HCKY
Sbjct: 181 VGEFCKQLEDVNLRFCEGLTDAGLVALARGSGKSLKAFGIAACTKITDVSLESVGVHCKY 240

Query: 241 LESLSLDSEIIHNKGV 257
           LE LSLDSE+IHNKGV
Sbjct: 241 LEVLSLDSEVIHNKGV 253

[Close]

BLAST of Carg15938 vs. TrEMBL
Match: tr|A0A1S3C8N0|A0A1S3C8N0_CUCME (F-box/LRR-repeat protein 4 OS=Cucumis melo OX=3656 GN=LOC103497910 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 5.4e-108
Identity = 202/257 (78.60%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH WINT+LPDELI+EIFRCLDSKLSRDACSLVC+RWLKLERLSRTTLRIGATGSP+L
Sbjct: 1   MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGALESS 120
           FVQLLARRFVN+RNVHIDERLAIS  LH  RRRR E   LP+   + TDNTGAEG L+SS
Sbjct: 61  FVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEATRLPY---HGTDNTGAEGVLDSS 120

Query: 121 YLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXXX 180
            LSDAGLIALSVGFPNLEKLSLIWCSNISS GLTSLAEKCRFLKSL+LQGCYVGD     
Sbjct: 121 CLSDAGLIALSVGFPNLEKLSLIWCSNISSHGLTSLAEKCRFLKSLELQGCYVGDQGVAA 180

Query: 181 XXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKY 240
                        RFCEGLTD GLV LARG GKSLK FGI AC KITD+SLE+VG+HCK 
Sbjct: 181 VGEFCKQLEDVNLRFCEGLTDAGLVALARGSGKSLKAFGIAACTKITDISLESVGVHCKN 240

Query: 241 LESLSLDSEIIHNKGVL 258
           LE LSLDSE+IHNKGVL
Sbjct: 241 LEVLSLDSEVIHNKGVL 254

[Close]

BLAST of Carg15938 vs. TrEMBL
Match: tr|A0A2P5E3U6|A0A2P5E3U6_PARAD (F-box domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_006670 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.7e-90
Identity = 179/261 (68.58%), Postives = 196/261 (75.10%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH  INT LP+ELI+EIFR LDSK SRDACSLVCKRWL LERL+RTTLR+GATGSP+L
Sbjct: 1   MRGHDRINTCLPEELIVEIFRRLDSKPSRDACSLVCKRWLALERLTRTTLRLGATGSPDL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEG-ALES 120
           FV LL+RRF N+RNVHIDERL ISLP   GRRR N    +P    + T+  G E    ES
Sbjct: 61  FVMLLSRRFFNVRNVHIDERLNISLPAQLGRRRGNSHNTVPSLQLHDTEKNGPEDVGFES 120

Query: 121 SYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXXXX 180
             LSDAGLI L  GF  LEKLSLIWCSN+SS GL SLA+KC FL+ LDLQGCYVGD    
Sbjct: 121 CSLSDAGLITLGEGFQKLEKLSLIWCSNVSSAGLISLAKKCTFLRYLDLQGCYVGDQGLA 180

Query: 181 XXXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCK 240
                         RFCEGLTD GLVELA GCGKSLK  GI ACAKITDVSLEAVG+HCK
Sbjct: 181 AVGQSCKQLEDLNLRFCEGLTDMGLVELALGCGKSLKALGIAACAKITDVSLEAVGLHCK 240

Query: 241 YLESLSLDSEIIHNKGVLSVA 261
            LE+LSLDSE +HNKGVL+VA
Sbjct: 241 SLETLSLDSEFMHNKGVLAVA 261

[Close]

BLAST of Carg15938 vs. TrEMBL
Match: tr|A0A2P5FX15|A0A2P5FX15_9ROSA (F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021080 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.3e-90
Identity = 180/265 (67.92%), Postives = 201/265 (75.85%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH  INT LP+ELI+EIFR LDSK SRDACSLVCKRWL LERL+RTTLR+GATGSP+L
Sbjct: 1   MRGHDRINTCLPEELIVEIFRRLDSKPSRDACSLVCKRWLALERLTRTTLRVGATGSPDL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVM----CLPFNSHNATDNTGAEG- 120
           FV+LL+RRF+N+RNVHIDERL ISLP+  GRRR N        +P    + T+  G E  
Sbjct: 61  FVKLLSRRFLNVRNVHIDERLNISLPVQLGRRRGNXXXXSHNTVPSLQLHDTEKNGPEDV 120

Query: 121 ALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGD 180
             ES  LSDAGLIAL  GF  LEKLSLIWCSN+SS GL SLA++C FL+ LDLQGCYVGD
Sbjct: 121 GFESCSLSDAGLIALGEGFQKLEKLSLIWCSNVSSAGLISLAKECTFLRYLDLQGCYVGD 180

Query: 181 XXXXXXXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVG 240
                             RFCEGLTDTGLVELA GCGKSLK  GI ACAKITDVSLEAVG
Sbjct: 181 QGLAAVGQSCKQLEDLNLRFCEGLTDTGLVELALGCGKSLKALGIAACAKITDVSLEAVG 240

Query: 241 MHCKYLESLSLDSEIIHNKGVLSVA 261
           +HCK LE+LSLDSE +HNKGVL+VA
Sbjct: 241 LHCKSLETLSLDSEFMHNKGVLAVA 265

[Close]

BLAST of Carg15938 vs. TrEMBL
Match: tr|A0A067G5N2|A0A067G5N2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007312mg PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.7e-90
Identity = 175/263 (66.54%), Postives = 200/263 (76.05%), Query Frame = 0


Query: 1   MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPEL 60
           MRGH  INT LPDE+I+EIFR LDSK SRDACSLVC+RWL LERLSRTTLRIGA+GSP+L
Sbjct: 1   MRGHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDL 60

Query: 61  FVQLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHNATDNTGAEGA---L 120
           FV+LL+RRF N++++HIDERL++S+P+  GRRR ++        H  T  TG+E      
Sbjct: 61  FVKLLSRRFANVKSIHIDERLSVSIPVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQS 120

Query: 121 ESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDXX 180
           ES YLSD+GL AL+ GF  LEKLSLIWCSNISS GL SLA+KC  LKSLDLQGCYVGD  
Sbjct: 121 ESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180

Query: 181 XXXXXXXXXXXXXXXXRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMH 240
                           RFCEGLTDTGLV+LA GCGKSLK+ GI AC KITDVSLEAVG H
Sbjct: 181 LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH 240

Query: 241 CKYLESLSLDSEIIHNKGVLSVA 261
           CK LE+LSLDSE IHNKGV +VA
Sbjct: 241 CKSLETLSLDSEFIHNKGVHAVA 263

The following BLAST results are available for this feature:

BLAST of Carg15938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514735.1	4.0e-131	99.23	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 4-like [Cucurbita pepo subsp. pepo...	[more]
XP_022930250.1	9.0e-131	99.23	F-box/LRR-repeat protein 4 isoform X2 [Cucurbita moschata]	[more]
XP_023000156.1	9.0e-131	99.23	F-box/LRR-repeat protein 4 isoform X1 [Cucurbita maxima]	[more]
XP_023548821.1	7.1e-120	83.08	F-box/LRR-repeat protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006372.1	1.3e-118	83.08	LOW QUALITY PROTEIN: F-box/LRR-repeat protein 4-like [Cucurbita maxima]	[more]

BLAST of Carg15938 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15475.1	5.7e-71	56.52	F-box/RNI-like superfamily protein	[more]
AT3G26810.1	3.5e-12	31.95	auxin signaling F-box 2	[more]
AT1G12820.1	6.6e-11	30.77	auxin signaling F-box 3	[more]
AT5G51370.2	7.3e-10	29.17	RNI-like superfamily protein	[more]
AT5G49980.1	1.4e-08	30.46	auxin F-box protein 5	[more]

BLAST of Carg15938 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C5D2\|FBL4_ARATH	1.0e-69	56.52	F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1	[more]
sp\|Q2R3K5\|TIRC_ORYSJ	3.7e-11	31.52	Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. ...	[more]
sp\|Q9LW29\|AFB2_ARATH	6.3e-11	31.95	Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=...	[more]
sp\|Q9LPW7\|AFB3_ARATH	1.2e-09	30.77	Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=...	[more]
sp\|Q7XVM8\|TIR1B_ORYSJ	2.0e-09	29.24	Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. ...	[more]

BLAST of Carg15938 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCP6\|A0A0A0KCP6_CUCSA	4.1e-108	78.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062270 PE=4 SV=1	[more]
tr\|A0A1S3C8N0\|A0A1S3C8N0_CUCME	5.4e-108	78.60	F-box/LRR-repeat protein 4 OS=Cucumis melo OX=3656 GN=LOC103497910 PE=4 SV=1	[more]
tr\|A0A2P5E3U6\|A0A2P5E3U6_PARAD	1.7e-90	68.58	F-box domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0...	[more]
tr\|A0A2P5FX15\|A0A2P5FX15_9ROSA	2.3e-90	67.92	F-box domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_02108...	[more]
tr\|A0A067G5N2\|A0A067G5N2_CITSI	8.7e-90	66.54	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007312mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR032675	LRR_dom_sf
IPR001810	F-box_dom
IPR001611	Leu-rich_rpt
IPR006553	Leu-rich_rpt_Cys-con_subtyp

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15938-RA	Carg15938-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 160..184 e-value: 1.3 score: 18.1 coord: 212..237 e-value: 20.0 score: 12.2 coord: 185..210 e-value: 3.6E-6 score: 36.5 coord: 263..287 e-value: 3.4 score: 16.7 coord: 238..262 e-value: 53.0 score: 8.9 coord: 134..159 e-value: 4.3E-4 score: 29.6
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 4..47 e-value: 2.4E-9 score: 38.6
None	No IPR available	PANTHER	PTHR45517	FAMILY NOT NAMED	coord: 1..305
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 120..303
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 186..208 e-value: 0.41 score: 10.7 coord: 159..180 e-value: 0.014 score: 15.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 11..40 e-value: 4.8E-7 score: 29.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 120..305 e-value: 5.6E-42 score: 145.7
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 10..47

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15938	Cla009361	Watermelon (97103) v1	carwmB0317
Carg15938	Csa6G062270	Cucumber (Chinese Long) v2	carcuB0351
Carg15938	MELO3C021388	Melon (DHL92) v3.5.1	carmeB0327
Carg15938	ClCG06G005660	Watermelon (Charleston Gray)	carwcgB0318
Carg15938	CSPI06G05160	Wild cucumber (PI 183967)	carcpiB0356
Carg15938	Cucsa.363490	Cucumber (Gy14) v1	carcgyB0384
Carg15938	CmaCh08G011830	Cucurbita maxima (Rimu)	carcmaB0458
Carg15938	CmaCh17G002840	Cucurbita maxima (Rimu)	carcmaB0455
Carg15938	CmoCh08G011540	Cucurbita moschata (Rifu)	carcmoB0449
Carg15938	CmoCh17G002710	Cucurbita moschata (Rifu)	carcmoB0446
Carg15938	Lsi09G013730	Bottle gourd (USVL1VR-Ls)	carlsiB296
Carg15938	Cp4.1LG12g02430	Cucurbita pepo (Zucchini)	carcpeB0450
Carg15938	Cp4.1LG17g01120	Cucurbita pepo (Zucchini)	carcpeB0453
Carg15938	CsGy6G005080	Cucumber (Gy14) v2	carcgybB0334
Carg15938	MELO3C021388.2	Melon (DHL92) v3.6.1	carmedB0336
Carg15938	CsaV3_6G005490	Cucumber (Chinese Long) v3	carcucB0356
Carg15938	Cla97C06G115170	Watermelon (97103) v2	carwmbB0334
Carg15938	Bhi12G001584	Wax gourd	carwgoB0408

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15938	Carg05465	Silver-seed gourd	carcarB080

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15938	Silver-seed gourd	carcarB347
Carg15938	Cucumber (Gy14) v2	carcgybB0333
Carg15938	Cucumber (Gy14) v1	carcgyB0383
Carg15938	Cucurbita maxima (Rimu)	carcmaB0453
Carg15938	Cucurbita maxima (Rimu)	carcmaB0457
Carg15938	Cucurbita moschata (Rifu)	carcmoB0444
Carg15938	Cucurbita moschata (Rifu)	carcmoB0448
Carg15938	Cucurbita pepo (Zucchini)	carcpeB0454
Carg15938	Cucurbita pepo (Zucchini)	carcpeB0456
Carg15938	Wild cucumber (PI 183967)	carcpiB0355
Carg15938	Cucumber (Chinese Long) v2	carcuB0350
Carg15938	Cucumber (Chinese Long) v3	carcucB0355
Carg15938	Bottle gourd (USVL1VR-Ls)	carlsiB298
Carg15938	Melon (DHL92) v3.5.1	carmeB0332
Carg15938	Melon (DHL92) v3.6.1	carmedB0340
Carg15938	Watermelon (Charleston Gray)	carwcgB0317
Carg15938	Watermelon (97103) v1	carwmB0316
Carg15938	Watermelon (97103) v2	carwmbB0333
Carg15938	Wax gourd	carwgoB0411