Carg15875 (gene) Silver-seed gourd

Overview
NameCarg15875
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAuxin-responsive protein
LocationCucurbita_argyrosperma_scaffold_080 : 322261 .. 323181 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCCTTTTCTTTTCTCCCAAAACAAAAAAAAAAAAAAAGAAATGGATTCCAAGCTCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTATGTGCCGTTTCGATTACGACTCTTTGTTATGGTTTTTGGGTCTCTGTTTTGATTCTCAATTTGGGTTTTGTAGGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCTTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGGCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGACCAGAATCGGGGCATACTGTGAAAGCGAAGGGTACCGGGGATCGGATTATGCCCCGACTTATGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGGGGTGAGTTTTTCTAATAATTCCCTGAAATTCCAAATCTGTATTTTAATTAAATTCATGAGCTTATTTGATTTGGTGATGAATTAAATGCAGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAACTAACACCTTTTTTTTTTTTAATTTACAGAACGATATGATGAATTTTTCTTCATTTTTAATTTTTGTTTTTAAGTTTTGTAAGATAAATTAGCTAATGAAATCAAATTGTAATTAACATATACTTTTATTACTACATACATTCCCGAAGTCTATTTATGGAGTGTTGTAATTACAT

mRNA sequence

CAACCCTTTTCTTTTCTCCCAAAACAAAAAAAAAAAAAAAGAAATGGATTCCAAGCTCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCTTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGGCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGACCAGAATCGGGGCATACTGTGAAAGCGAAGGGTACCGGGGATCGGATTATGCCCCGACTTATGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGGGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAACTAACACCTTTTTTTTTTTTAATTTACAGAACGATATGATGAATTTTTCTTCATTTTTAATTTTTGTTTTTAAGTTTTGTAAGATAAATTAGCTAATGAAATCAAATTGTAATTAACATATACTTTTATTACTACATACATTCCCGAAGTCTATTTATGGAGTGTTGTAATTACAT

Coding sequence (CDS)

ATGGATTCCAAGCTCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGCCTCGGCCTACCAGGAACCGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTAACAAGAGAAATTTACAGAACGACTCTGCTCCTCCACCCAAGTCTCAGGTTGTTGGGTGGCCGCCGATTAGATCTTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGGCAACCACGGCGGCGGAGGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTGAACTTCTCAAGGGTTTAGAGGAGATGTTCAAGACCAGAATCGGGGCATACTGTGAAAGCGAAGGGTACCGGGGATCGGATTATGCCCCGACTTATGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCATGGGGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTGAGAAACTAA

Protein sequence

MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGLRN
Homology
[Close]
BLAST of Carg15875 vs. NCBI nr
Match: XP_022930223.1 (auxin-induced protein 22B-like [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 4.2e-96
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0 

Query: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSK SDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKPSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTE+TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTESTTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 TRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 IRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 179

[Close]
BLAST of Carg15875 vs. NCBI nr
Match: XP_023515196.1 (auxin-induced protein 22B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.8 bits (922), Expect = 5.5e-96
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0 

Query: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSKLSDLNLGATELRLGLPGTAAES+GSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESNGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120

Query: 121 TRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCE EGYRGSDYAPTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGLRN
Sbjct: 121 FRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSEVGGLRN 179

[Close]
BLAST of Carg15875 vs. NCBI nr
Match: XP_023000550.1 (auxin-responsive protein IAA4-like [Cucurbita maxima])

HSP 1 Score: 352.1 bits (902), Expect = 1.1e-93
Identity = 172/179 (96.09%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPP 60
           MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRT KR LQNDSAPPPKSQVVGWPP
Sbjct: 1   MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTYKRILQNDSAPPPKSQVVGWPP 60

Query: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFK 120
           IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYP LLKGLEEMFK
Sbjct: 61  IRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPSLLKGLEEMFK 120

Query: 121 TRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGLRN 180
            RIGAYCE EGYRGSDYAPTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGS+VGGLRN
Sbjct: 121 FRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSDVGGLRN 179

[Close]
BLAST of Carg15875 vs. NCBI nr
Match: XP_022961610.1 (auxin-responsive protein IAA4-like [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 9.1e-83
Identity = 157/180 (87.22%), Postives = 164/180 (91.11%), Query Frame = 0 

Query: 1   MDSKLS---DLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVG 60
           MDSKLS    LNL ATELRLGLPGT    DGSADNS GVRTNKRNLQN SAPPPKSQVVG
Sbjct: 1   MDSKLSFQNHLNLEATELRLGLPGT----DGSADNSCGVRTNKRNLQNHSAPPPKSQVVG 60

Query: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 120
           WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRK+D+G+YKGYPEL+KGLEE
Sbjct: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEE 120

Query: 121 MFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           MFK R+G Y E EGY+GSDYAPTYEDKDGDWMLVGDVPW MFISSCKR+RIMKGSEVGGL
Sbjct: 121 MFKFRMGTYREREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRLRIMKGSEVGGL 176

[Close]
BLAST of Carg15875 vs. NCBI nr
Match: XP_022975486.1 (auxin-induced protein 22B-like [Cucurbita maxima])

HSP 1 Score: 312.8 bits (800), Expect = 7.7e-82
Identity = 155/180 (86.11%), Postives = 163/180 (90.56%), Query Frame = 0 

Query: 1   MDSKLS---DLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQNDSAPPPKSQVVG 60
           MDS+LS    LNL AT+LRLGLPG     DGSADNS GVRTNKRNLQN SAPPPKSQVVG
Sbjct: 1   MDSQLSFQNHLNLEATQLRLGLPGI----DGSADNSCGVRTNKRNLQNHSAPPPKSQVVG 60

Query: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 120
           WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRK+D+G+YKGYPEL+KGLEE
Sbjct: 61  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEE 120

Query: 121 MFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           MFK R+G Y E EGY+GSDYAPTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGL
Sbjct: 121 MFKFRMGTYSEREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGL 176

[Close]
BLAST of Carg15875 vs. TAIR10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 218.4 bits (555), Expect = 3.6e-57
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 0 

Query: 8   LNLGATELRLGLPGT-AAESDGSADNSSGVRTNKRNLQN----DSAPPPKSQVVGWPPIR 67
           +NL ATELRLGLPGT    S G ++        ++ +++    ++A PPK+Q+VGWPP+R
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPPVR 70

Query: 68  SFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKTR 127
           S+RKN +  KK+E    +EG G YVKVSMDGAPYLRKID+ +YK YPEL+K LE MFK  
Sbjct: 71  SYRKNNVQTKKSE----SEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFS 130

Query: 128 IGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           +G Y E EGY+GSD+ PTYEDKDGDWMLVGDVPW MF+SSCKR+RIMKGSEV GL
Sbjct: 131 VGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181

[Close]
BLAST of Carg15875 vs. TAIR10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 108/183 (59.02%), Postives = 126/183 (68.85%), Query Frame = 0 

Query: 8   LNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQND-------------SAPPPKSQ 67
           +NL  TELRLGLPGT    +     S     NKR L  D             ++PP K+Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 68  VVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKG 127
           +VGWPP+RS+RKN +  KK E  +  EG GIYVKVSMDGAPYLRKID+  YKGY ELLK 
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNE--SEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKA 124

Query: 128 LEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEV 178
           LE MFK  +G Y E +GY+GSD+ PTYEDKDGDWML+GDVPW MFI +CKR+RIMKGSE 
Sbjct: 125 LEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEA 184

[Close]
BLAST of Carg15875 vs. TAIR10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2)

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-51
Identity = 103/180 (57.22%), Postives = 119/180 (66.11%), Query Frame = 0 

Query: 4   KLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNL------QNDSAPPPKSQVVG 63
           K+++LNL  TEL LGLPG   E        S V++N + L      + +S PP K+Q+VG
Sbjct: 5   KVNELNLKDTELCLGLPG-RTEKIKEEQEVSCVKSNNKRLFEETRDEEESTPPTKTQIVG 64

Query: 64  WPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEE 123
           WPP+RS RKN                  YVKVSMDGAPYLRKID+  YK YPELLK LE 
Sbjct: 65  WPPVRSSRKN-------------NNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALEN 124

Query: 124 MFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           MFK  IG YCE EGY+GS + PTYEDKDGDWMLVGDVPW MF SSCKR+RIMKGS+   L
Sbjct: 125 MFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170

[Close]
BLAST of Carg15875 vs. TAIR10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-40
Identity = 102/223 (45.74%), Postives = 120/223 (53.81%), Query Frame = 0 

Query: 8   LNLGATELRLGLPG------TAAESDGSADNSSGV------------RTNKRNLQNDS-- 67
           +N  ATELRLGLPG       A +++G    S  V              +K +L+N    
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query: 68  --APPPKSQVVGWPPIRSFRKNTLLPKKTEATTAAEGGG------------------IYV 127
              PP K+QVVGWPP+RSFRKN +  +K     A EG                     YV
Sbjct: 62  VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSXXXXXXXSACATVAYV 121

Query: 128 KVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKT-RIGAYCES------------EGYRG 178
           KVSMDGAPYLRKID+ LYK Y +L   L +MF +  IG Y               +   G
Sbjct: 122 KVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNG 181

[Close]
BLAST of Carg15875 vs. TAIR10
Match: AT4G14550.1 (indole-3-acetic acid inducible 14)

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-39
Identity = 93/216 (43.06%), Postives = 120/216 (55.56%), Query Frame = 0 

Query: 8   LNLGATELRLGLPG----------------------------TAAESDGSAD-NSSGVRT 67
           +NL  TEL LGLPG                              +   G  D N++G   
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 68  NKRNLQNDSAPPPKSQVVGWPPIRSFRKNTLLPKKT-EATTAAEGGG---IYVKVSMDGA 127
            K  L++ S PP K+QVVGWPP+R++RKN +  +K+ EA  A   GG    +VKVSMDGA
Sbjct: 61  EKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGA 120

Query: 128 PYLRKIDVGLYKGYPELLKGLEEMFKT-RIGAYCES------------EGYRGSDYAPTY 178
           PYLRK+D+ +Y  Y +L   L +MF +  +G+Y               +    S+Y P+Y
Sbjct: 121 PYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSY 180

[Close]
BLAST of Carg15875 vs. Swiss-Prot
Match: sp|P32294|AX22B_VIGRR (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.1e-58
Identity = 113/192 (58.85%), Postives = 135/192 (70.31%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAESDGSADNSSGVRTNKR--------------------NLQN 65
           SDLNL ATELRLGLPGT  + D +    + +R NKR                    +++ 
Sbjct: 9   SDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQHVET 68

Query: 66  DSAPPPKSQVVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLY 125
            SAPPPK+++VGWPPIRS+RKN++           EG GI+VKVSMDGAPYLRK+D+ +Y
Sbjct: 69  VSAPPPKAKIVGWPPIRSYRKNSV--------QEGEGDGIFVKVSMDGAPYLRKVDLKVY 128

Query: 126 KGYPELLKGLEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKR 178
            GYPELLK LE MFK  IG Y E EGY+GS+YAPTYEDKDGDWMLVGDVPW MF++SCKR
Sbjct: 129 GGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKR 188

[Close]
BLAST of Carg15875 vs. Swiss-Prot
Match: sp|P33077|IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 6.5e-56
Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 0 

Query: 8   LNLGATELRLGLPGT-AAESDGSADNSSGVRTNKRNLQN----DSAPPPKSQVVGWPPIR 67
           +NL ATELRLGLPGT    S G ++        ++ +++    ++A PPK+Q+VGWPP+R
Sbjct: 11  VNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPPVR 70

Query: 68  SFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKTR 127
           S+RKN +  KK+E    +EG G YVKVSMDGAPYLRKID+ +YK YPEL+K LE MFK  
Sbjct: 71  SYRKNNVQTKKSE----SEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFS 130

Query: 128 IGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           +G Y E EGY+GSD+ PTYEDKDGDWMLVGDVPW MF+SSCKR+RIMKGSEV GL
Sbjct: 131 VGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181

[Close]
BLAST of Carg15875 vs. Swiss-Prot
Match: sp|O24542|AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-55
Identity = 112/183 (61.20%), Postives = 130/183 (71.04%), Query Frame = 0 

Query: 7   DLNLGATELRLGLPGT----AAESDGSADNSSGVRTNKRNLQNDS--------APPPKSQ 66
           +LNL ATELRLGLPG+       +  S   SS   +++ ++ N S         PP K+Q
Sbjct: 11  ELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQ 70

Query: 67  VVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKG 126
           VVGWPPIRS+RKN +  KK E    +EG G+YVKVSM GAPYLRKID+ +YK YPELLK 
Sbjct: 71  VVGWPPIRSYRKNNVQQKKEE---ESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKA 130

Query: 127 LEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEV 178
           LE MFK   G Y E EGY GS+YAPTYEDKDGDWMLVGDVPW MF+SSCKR+RIMKGSE 
Sbjct: 131 LENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEA 190

[Close]
BLAST of Carg15875 vs. Swiss-Prot
Match: sp|Q38822|IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-54
Identity = 108/183 (59.02%), Postives = 126/183 (68.85%), Query Frame = 0 

Query: 8   LNLGATELRLGLPGTAAESDGSADNSSGVRTNKRNLQND-------------SAPPPKSQ 67
           +NL  TELRLGLPGT    +     S     NKR L  D             ++PP K+Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 68  VVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKG 127
           +VGWPP+RS+RKN +  KK E  +  EG GIYVKVSMDGAPYLRKID+  YKGY ELLK 
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNE--SEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKA 124

Query: 128 LEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEV 178
           LE MFK  +G Y E +GY+GSD+ PTYEDKDGDWML+GDVPW MFI +CKR+RIMKGSE 
Sbjct: 125 LEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEA 184

[Close]
BLAST of Carg15875 vs. Swiss-Prot
Match: sp|O24543|AX22E_VIGRR (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-53
Identity = 114/203 (56.16%), Postives = 135/203 (66.50%), Query Frame = 0 

Query: 1   MDSKLSDLNLGATELRLGLPGTAAESD-----GSADNSSGVRTN--------KRNLQNDS 60
           M S  ++LNL ATELRLGLPG+    +     GS   SS  R++        K N+ +DS
Sbjct: 1   MGSYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDS 60

Query: 61  A-------------PPPKSQVVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGA 120
           +              P K QVVGWPPIRSFRKN+L  KK E     +G G+Y+KVSM GA
Sbjct: 61  SDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVE---QGDGTGMYLKVSMAGA 120

Query: 121 PYLRKIDVGLYKGYPELLKGLEEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDV 178
           PYLRKID+ +YK YPELLK L+ +FK   G Y E EGY GS+YAPTYEDKDGDWMLVGDV
Sbjct: 121 PYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDV 180

[Close]
BLAST of Carg15875 vs. TrEMBL
Match: tr|A0A0A0LIA8|A0A0A0LIA8_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G200440 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.3e-73
Identity = 140/174 (80.46%), Postives = 151/174 (86.78%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAESDGSADNSSGVR-TNKRNLQNDSAPPPKSQVVGWPPIRSF 65
           +DLNL ATELRLGLPG  +E D S+  SS V+  NKRN QNDSAPPPK+QVVGWPPIRSF
Sbjct: 9   NDLNLEATELRLGLPGIVSERDDSSATSSAVKPNNKRNFQNDSAPPPKAQVVGWPPIRSF 68

Query: 66  RKNTLLPKKTEA-TTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKTRI 125
           RKNTL  KKTEA TTA +GGGIYVKVSMDGAPYLRKID+ +YKGYPELLK LE+MFK  I
Sbjct: 69  RKNTLQVKKTEATTTAVDGGGIYVKVSMDGAPYLRKIDLSVYKGYPELLKALEDMFKFTI 128

Query: 126 GAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           G Y E EGY+GSD+APTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGL
Sbjct: 129 GQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGL 182

[Close]
BLAST of Carg15875 vs. TrEMBL
Match: tr|A0A1S3BMB6|A0A1S3BMB6_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103491213 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 124/174 (71.26%), Postives = 133/174 (76.44%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAESD-GSADNSSGVRTNKRNLQNDSAPPPKSQVVGWPPIRSF 65
           +DLNL ATELRLGLPG  +E D                         K+QVVGWPPIRSF
Sbjct: 9   NDLNLEATELRLGLPGVVSERDXXXXXXXXXXXXXXXXXXXXXXXXXKAQVVGWPPIRSF 68

Query: 66  RKNTLLPKKTEATTAA-EGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGLEEMFKTRI 125
           RKNTL  KKTEATTAA +GGGIYVKVSMDGAPYLRKID+ +YKGYPE LK LE+MFK  I
Sbjct: 69  RKNTLQVKKTEATTAAVDGGGIYVKVSMDGAPYLRKIDLSVYKGYPEFLKALEDMFKFTI 128

Query: 126 GAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVGGL 178
           G Y E EGY+GSD+APTYEDKDGDWMLVGDVPW MFISSCKRMRIMKGSEVGGL
Sbjct: 129 GQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGL 182

[Close]
BLAST of Carg15875 vs. TrEMBL
Match: tr|A0A1U8LLA1|A0A1U8LLA1_GOSHI (Auxin-responsive protein OS=Gossypium hirsutum OX=3635 GN=LOC107927641 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 122/182 (67.03%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAES---------DGSADNSSGVRTNKRNLQNDSA-PPPKSQV 65
           +DLNL ATELRLGLPGT   S            AD+  GV   K + QN++A PPPK+Q+
Sbjct: 9   NDLNLKATELRLGLPGTEPVSIVRRNKRSLQQVADDDCGVNGCKSDDQNETAPPPPKAQI 68

Query: 66  VGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGL 125
           VGWPPIRS+RKN +  KK E    +EGGGIYVKVSMDGAPYLRKID+ +Y GYPELL+ +
Sbjct: 69  VGWPPIRSYRKNNIQTKKNE----SEGGGIYVKVSMDGAPYLRKIDLKVYSGYPELLQAI 128

Query: 126 EEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVG 178
           E MFK  IG Y E EGY+GSDYAPTYEDKDGDWMLVGDVPWGMFI+SCKR+RIMKGSE  
Sbjct: 129 ENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWMLVGDVPWGMFITSCKRLRIMKGSEAR 186

[Close]
BLAST of Carg15875 vs. TrEMBL
Match: tr|A0A2P5Q637|A0A2P5Q637_GOSBA (Auxin-responsive protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD33115 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 122/182 (67.03%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAES---------DGSADNSSGVRTNKRNLQNDSA-PPPKSQV 65
           +DLNL ATELRLGLPGT   S            AD+  GV   K + QN++A PPPK+Q+
Sbjct: 9   NDLNLKATELRLGLPGTEPVSIVRRNKRSLQQVADDDCGVNGCKSDDQNETAPPPPKAQI 68

Query: 66  VGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGL 125
           VGWPPIRS+RKN +  KK E    +EGGGIYVKVSMDGAPYLRKID+ +Y GYPELL+ +
Sbjct: 69  VGWPPIRSYRKNNIQTKKNE----SEGGGIYVKVSMDGAPYLRKIDLKVYSGYPELLQAI 128

Query: 126 EEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVG 178
           E MFK  IG Y E EGY+GSDYAPTYEDKDGDWMLVGDVPWGMFI+SCKR+RIMKGSE  
Sbjct: 129 ENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWMLVGDVPWGMFITSCKRLRIMKGSEAR 186

[Close]
BLAST of Carg15875 vs. TrEMBL
Match: tr|A0A2P5Y596|A0A2P5Y596_GOSBA (Auxin-responsive protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA09892 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.2e-60
Identity = 122/182 (67.03%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 6   SDLNLGATELRLGLPGTAAES---------DGSADNSSGVRTNKRNLQNDSA-PPPKSQV 65
           +DLNL ATELRLGLPGT   S            AD+  GV   K + QN++A PPPK+Q+
Sbjct: 9   NDLNLRATELRLGLPGTEPVSIVRSNKRSLQQVADDDCGVNGCKSDDQNETAPPPPKAQI 68

Query: 66  VGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPELLKGL 125
           VGWPPIRS+RKN +  KK E    +EGGGIYVKVSMDGAPYLRKID+ +Y GYPELL+ +
Sbjct: 69  VGWPPIRSYRKNNIQTKKNE----SEGGGIYVKVSMDGAPYLRKIDLKVYSGYPELLQAI 128

Query: 126 EEMFKTRIGAYCESEGYRGSDYAPTYEDKDGDWMLVGDVPWGMFISSCKRMRIMKGSEVG 178
           E MFK  IG Y E EGY+GSDYAPTYEDKDGDWMLVGDVPWGMFI+SCKR+RIMKGSE  
Sbjct: 129 ENMFKFTIGEYSEREGYKGSDYAPTYEDKDGDWMLVGDVPWGMFITSCKRLRIMKGSEAR 186

The following BLAST results are available for this feature:
BLAST of Carg15875 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022930223.14.2e-9697.77auxin-induced protein 22B-like [Cucurbita moschata][more]
XP_023515196.15.5e-9697.77auxin-induced protein 22B-like [Cucurbita pepo subsp. pepo][more]
XP_023000550.11.1e-9396.09auxin-responsive protein IAA4-like [Cucurbita maxima][more]
XP_022961610.19.1e-8387.22auxin-responsive protein IAA4-like [Cucurbita moschata][more]
XP_022975486.17.7e-8286.11auxin-induced protein 22B-like [Cucurbita maxima][more]
BLAST of Carg15875 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43700.13.6e-5761.71AUX/IAA transcriptional regulator family protein[more]
AT1G04240.11.5e-5559.02AUX/IAA transcriptional regulator family protein[more]
AT3G23030.13.8e-5157.22indole-3-acetic acid inducible 2[more]
AT3G04730.11.8e-4045.74indoleacetic acid-induced protein 16[more]
AT4G14550.15.8e-3943.06indole-3-acetic acid inducible 14[more]
BLAST of Carg15875 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P32294|AX22B_VIGRR4.1e-5858.85Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S... [more]
sp|P33077|IAA4_ARATH6.5e-5661.71Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2[more]
sp|O24542|AX22D_VIGRR4.2e-5561.20Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S... [more]
sp|Q38822|IAA3_ARATH2.7e-5459.02Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1[more]
sp|O24543|AX22E_VIGRR1.0e-5356.16Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S... [more]
BLAST of Carg15875 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIA8|A0A0A0LIA8_CUCSA4.3e-7380.46Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G200440 PE=3 SV=1[more]
tr|A0A1S3BMB6|A0A1S3BMB6_CUCME1.1e-6071.26Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103491213 PE=3 SV=1[more]
tr|A0A1U8LLA1|A0A1U8LLA1_GOSHI3.2e-6067.03Auxin-responsive protein OS=Gossypium hirsutum OX=3635 GN=LOC107927641 PE=3 SV=1[more]
tr|A0A2P5Q637|A0A2P5Q637_GOSBA3.2e-6067.03Auxin-responsive protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD33115 PE=3 S... [more]
tr|A0A2P5Y596|A0A2P5Y596_GOSBA3.2e-6067.03Auxin-responsive protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA09892 PE=3 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR003311AUX_IAA
IPR033389AUX/IAA_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15875-RACarg15875-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033389AUX/IAA domainPFAMPF02309AUX_IAAcoord: 38..177
e-value: 3.6E-55
score: 187.4
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 78..179
e-value: 7.3E-41
score: 140.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..51
NoneNo IPR availablePANTHERPTHR31734:SF11AUXIN-RESPONSIVE PROTEIN IAA1-RELATEDcoord: 5..177
NoneNo IPR availableSUPERFAMILYSSF54277CAD & PB1 domainscoord: 78..170
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 5..177
IPR000270PB1 domainPROSITEPS51745PB1coord: 84..171
score: 24.255

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15875Cla021571Watermelon (97103) v1carwmB0316
Carg15875Cla007544Watermelon (97103) v1carwmB0317
Carg15875Csa3G143580Cucumber (Chinese Long) v2carcuB0350
Carg15875Csa2G200440Cucumber (Chinese Long) v2carcuB0349
Carg15875MELO3C006477Melon (DHL92) v3.5.1carmeB0332
Carg15875MELO3C014266Melon (DHL92) v3.5.1carmeB0330
Carg15875ClCG06G006610Watermelon (Charleston Gray)carwcgB0318
Carg15875ClCG05G004670Watermelon (Charleston Gray)carwcgB0317
Carg15875CSPI02G10790Wild cucumber (PI 183967)carcpiB0354
Carg15875CSPI03G12540Wild cucumber (PI 183967)carcpiB0355
Carg15875Cucsa.254860Cucumber (Gy14) v1carcgyB0383
Carg15875Cucsa.386650Cucumber (Gy14) v1carcgyB0385
Carg15875CmaCh08G011140Cucurbita maxima (Rimu)carcmaB0458
Carg15875CmaCh14G017730Cucurbita maxima (Rimu)carcmaB0453
Carg15875CmaCh06G013450Cucurbita maxima (Rimu)carcmaB0457
Carg15875CmaCh17G012150Cucurbita maxima (Rimu)carcmaB0456
Carg15875CmaCh17G001910Cucurbita maxima (Rimu)carcmaB0455
Carg15875CmoCh17G011930Cucurbita moschata (Rifu)carcmoB0447
Carg15875CmoCh08G010900Cucurbita moschata (Rifu)carcmoB0449
Carg15875CmoCh17G001880Cucurbita moschata (Rifu)carcmoB0446
Carg15875CmoCh14G018090Cucurbita moschata (Rifu)carcmoB0444
Carg15875CmoCh06G013570Cucurbita moschata (Rifu)carcmoB0448
Carg15875Lsi09G012790Bottle gourd (USVL1VR-Ls)carlsiB296
Carg15875Lsi02G022430Bottle gourd (USVL1VR-Ls)carlsiB297
Carg15875Lsi05G016620Bottle gourd (USVL1VR-Ls)carlsiB299
Carg15875Cp4.1LG17g01690Cucurbita pepo (Zucchini)carcpeB0453
Carg15875Cp4.1LG12g01590Cucurbita pepo (Zucchini)carcpeB0450
Carg15875Cp4.1LG08g03670Cucurbita pepo (Zucchini)carcpeB0456
Carg15875CsGy2G010820Cucumber (Gy14) v2carcgybB0332
Carg15875CsGy3G012700Cucumber (Gy14) v2carcgybB0333
Carg15875MELO3C006477.2Melon (DHL92) v3.6.1carmedB0340
Carg15875MELO3C014266.2Melon (DHL92) v3.6.1carmedB0338
Carg15875CsaV3_3G012660Cucumber (Chinese Long) v3carcucB0355
Carg15875CsaV3_2G013230Cucumber (Chinese Long) v3carcucB0354
Carg15875Cla97C05G085710Watermelon (97103) v2carwmbB0333
Carg15875Cla97C06G116140Watermelon (97103) v2carwmbB0334
Carg15875Cla97C09G170150Watermelon (97103) v2carwmbB0336
Carg15875Bhi12G002025Wax gourdcarwgoB0409
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15875Carg10062Silver-seed gourdcarcarB260
Carg15875Carg16592Silver-seed gourdcarcarB271
Carg15875Carg06191Silver-seed gourdcarcarB349
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15875Wax gourdcarwgoB0407