Carg15844 (gene) Silver-seed gourd

Overview
NameCarg15844
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionchlorophyll(Ide) b reductase NOL, chloroplastic isoform X2
LocationCucurbita_argyrosperma_scaffold_055 : 686061 .. 686593 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCGTTCTCCTTCATCTCGCGTAATGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGAGTTACAGTCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGTAAAGGCTGAAGTCTTTCAGCAGAGAGGGACTATGATTCCTCCTTATAATGTTTTGATCGCTGGCTCTACTAAAGGTGTGGCGTCCTTTTGTTCATTTTGTTTGTTTGATATATTGCGTTATGTTTTGGTTTCCTGTTGCATCTATTAATTTCCTGCTGGTTTTCTGTTTGTAGTTTTGCTTGAACTTATGGCTTCTGGTATTTGACGTCGTTTTTGTAAGCAAGAAATTCCGAATTGTACTCGCTCAACTGTATTTTTGCTTTTTGACGAAATTTTGGGTGGTGGAATACATATTTGTTTATCTGATTGACTTGAATTCTTTTTAGGAACTTGGTTTGAGGAACTTCCTGGCTGGCTCTTTCCTCTTAGTTTTATTAAGAATTTG

mRNA sequence

TTTCCGTTCTCCTTCATCTCGCGTAATGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGATCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGTAAAGGCTGAAGTCTTTCAGCAGAGAGGGACTATGATTCCTCCTTATAATGTTTTGATCGCTGGCTCTACTAAAGGAACTTGGTTTGAGGAACTTCCTGGCTGGCTCTTTCCTCTTAGTTTTATTAAGAATTTG

Coding sequence (CDS)

ATGGTGGCTTCTTCTTCGTCTCTCCTCCTTCCGGTCTACGCCTATCAATCTGCAAATCGGAGATCTTTCGATTGGTGGTTCGCGCCAGATCTTGTGAATTCCAGTTCTCTATCCGTAAAGGCTGAAGTCTTTCAGCAGAGAGGGACTATGATTCCTCCTTATAATGTTTTGATCGCTGGCTCTACTAAAGGAACTTGGTTTGAGGAACTTCCTGGCTGGCTCTTTCCTCTTAGTTTTATTAAGAATTTG

Protein sequence

MVASSSSLLLPVYAYQSANRRSFDWWFAPDLVNSSSLSVKAEVFQQRGTMIPPYNVLIAGSTKGTWFEELPGWLFPLSFIKNL
Homology
[Close]
BLAST of Carg15844 vs. NCBI nr
Match: XP_022134271.1 (chlorophyll(ide) b reductase NOL, chloroplastic [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 7.9e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 32 VNSSSLSVKAEVFQQRGTMIPPYNVLIAGSTKG 65
          VNS S S+KAE+FQQR  M+PPYNVLI GSTKG
Sbjct: 60 VNSYSASIKAELFQQREPMVPPYNVLITGSTKG 92

[Close]
BLAST of Carg15844 vs. NCBI nr
Match: XP_008456629.2 (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 2  VASSSSLLLPVYAYQS-----ANRRSFDWWFAPDLVNSSSLSVKAEVFQQRGTMIPPYNV 61
          ++ SS + L +Y ++S        R      A  LVNS+S+S K E FQQ+  M+PPYNV
Sbjct: 27 ISPSSQIRLSLYKFKSFTLSIPRSRKISNIPANSLVNSNSVSPKPEEFQQKEPMVPPYNV 86

Query: 62 LIAGSTKG 65
          LI GSTKG
Sbjct: 87 LITGSTKG 94

[Close]
BLAST of Carg15844 vs. NCBI nr
Match: XP_016902022.1 (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 2   VASSSSLLLPVYAYQS-----ANRRSFDWWFAPDLVNSSSLSVKAEVFQQRGTMIPPYNV 61
           ++ SS + L +Y ++S        R      A  LVNS+S+S K E FQQ+  M+PPYNV
Sbjct: 64  ISPSSQIRLSLYKFKSFTLSIPRSRKISNIPANSLVNSNSVSPKPEEFQQKEPMVPPYNV 123

Query: 62  LIAGSTKG 65
           LI GSTKG
Sbjct: 124 LITGSTKG 131

[Close]
BLAST of Carg15844 vs. NCBI nr
Match: XP_004140918.1 (PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic [Cucumis sativus] >XP_011656580.1 PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic [Cucumis sativus] >XP_011656581.1 PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic [Cucumis sativus] >KGN46061.1 hypothetical protein Csa_6G046390 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-04
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 31 LVNSSSLSVKAEVFQQRGTMIPPYNVLIAGSTKG 65
          +VNS+S+S K E FQQ+  M+PPYNVLI GSTKG
Sbjct: 60 VVNSNSVSTKPEEFQQKEPMVPPYNVLITGSTKG 93

[Close]
BLAST of Carg15844 vs. TAIR10
Match: AT5G04900.1 (NYC1-like)

HSP 1 Score: 41.2 bits (95), Expect = 3.6e-04
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 32 VNSSSLSVKAEVFQQRGTMIPPYNVLIAGSTKG 65
          V  SS +V+A +  +R  M PPYN+LI GSTKG
Sbjct: 58 VTPSSAAVEARISGKREPMTPPYNILITGSTKG 90

[Close]
BLAST of Carg15844 vs. TrEMBL
Match: tr|A0A1S4E1C1|A0A1S4E1C1_CUCME (chlorophyll(Ide) b reductase NOL, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496530 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-05
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 2   VASSSSLLLPVYAYQS-----ANRRSFDWWFAPDLVNSSSLSVKAEVFQQRGTMIPPYNV 61
           ++ SS + L +Y ++S        R      A  LVNS+S+S K E FQQ+  M+PPYNV
Sbjct: 64  ISPSSQIRLSLYKFKSFTLSIPRSRKISNIPANSLVNSNSVSPKPEEFQQKEPMVPPYNV 123

Query: 62  LIAGSTKG 65
           LI GSTKG
Sbjct: 124 LITGSTKG 131

[Close]
BLAST of Carg15844 vs. TrEMBL
Match: tr|A0A1S3C3P2|A0A1S3C3P2_CUCME (chlorophyll(Ide) b reductase NOL, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496530 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-05
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 2  VASSSSLLLPVYAYQS-----ANRRSFDWWFAPDLVNSSSLSVKAEVFQQRGTMIPPYNV 61
          ++ SS + L +Y ++S        R      A  LVNS+S+S K E FQQ+  M+PPYNV
Sbjct: 27 ISPSSQIRLSLYKFKSFTLSIPRSRKISNIPANSLVNSNSVSPKPEEFQQKEPMVPPYNV 86

Query: 62 LIAGSTKG 65
          LI GSTKG
Sbjct: 87 LITGSTKG 94

[Close]
BLAST of Carg15844 vs. TrEMBL
Match: tr|A0A0A0KE83|A0A0A0KE83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046390 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-04
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 31 LVNSSSLSVKAEVFQQRGTMIPPYNVLIAGSTKG 65
          +VNS+S+S K E FQQ+  M+PPYNVLI GSTKG
Sbjct: 60 VVNSNSVSTKPEEFQQKEPMVPPYNVLITGSTKG 93

The following BLAST results are available for this feature:
BLAST of Carg15844 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134271.17.9e-0575.76chlorophyll(ide) b reductase NOL, chloroplastic [Momordica charantia][more]
XP_008456629.21.0e-0445.59PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X1 [Cucumis m... [more]
XP_016902022.11.0e-0445.59PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Cucumis m... [more]
XP_004140918.16.7e-0467.65PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic [Cucumis sativus] >XP... [more]
BLAST of Carg15844 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04900.13.6e-0454.55NYC1-like[more]
BLAST of Carg15844 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15844 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E1C1|A0A1S4E1C1_CUCME6.8e-0545.59chlorophyll(Ide) b reductase NOL, chloroplastic isoform X2 OS=Cucumis melo OX=36... [more]
tr|A0A1S3C3P2|A0A1S3C3P2_CUCME6.8e-0545.59chlorophyll(Ide) b reductase NOL, chloroplastic isoform X1 OS=Cucumis melo OX=36... [more]
tr|A0A0A0KE83|A0A0A0KE83_CUCSA4.4e-0467.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046390 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15844-RACarg15844-RAmRNA