Carg15797 (gene) Silver-seed gourd

Overview
NameCarg15797
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_055 : 426878 .. 428988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGGCGAAGAAGAGTCTGAGGAAGGCGGTTGTGCCGCCTACTCTCGTCGGCATTCCTTCTCCCGGAAACCTCCAGCCACTCGTCTCACCCTCCATTAACGCATCTCTCCTTCTTTACCGGCTATTCATCAACCCGAAGCCTTTTCTTTTCCATCTCTTTCAATGTCTCTCAAGCTTTCTCACTGTCTTGGTTAGTCCGGATCGTTCTTCGTGCTGGCTCCTCATCGCTTCTGGTTCCCGTGTTTTTGAACTCCAGGTATGCTCGCTGCTGTCTGCTGAGTTTCTCTTGCGCGTATTGGTGCTGTGACATGCGAAGTAATGGGAATGTGTTGCTCTGGTATCTAGTTTTATTTGTTTGTAATGTAGTTGGAATGTGTAGACGTGCTGGATTTTGTTTCTGTTTTATTATTTTTTTTCCTTTTGTTTTGTGTAAAATATTGAATGCAGTATATTACACTTTATTTTCTGTAGATTTCCATGGAACTATAGAATCATCAGTCATCGAGGGAAATAATAGCTTACTCATCGTTGAACAGACGAAGGTATCATAATATATGGTAGTTTTGGTCATGTTGCAACACTATTTGCTTAAGGTTCTGTATTTGATATTCATAATAGAAAGTGTAGGACATGATAGGTTGGAACCCAGGGATTCATGATCCTACTTATCATGATAGAAATTCATTTTGGGCTGAGAAAAAGGGTACCTACCTCCTCAAGTAGCCTATATACAATCCCCTACTGAAAAATGAGGATTGAGGATTTTTTATATACAGAAGAGGAACATCCCTCTTTTGGCCAAATGGATTTGACGTTTTTACCAAGAAAAGGATCCAAGAAAAGGATGTTAGGAATCACGACTCTCCACGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCTACCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCACGACCATTCCCTAAATTAGCCAATGTGGGACTCATTTCCAATAATCCTCAACAATCGTCCCCTCGAACAAAGTACCCTATAAGCCTCCCCTGAGTCTTATGGAGCTCTTGAATAGCCTCCCTTTAATTGAGACTCGACTCCTTTCTCTGGAGTCCTCGAACAAAGTACACCCTTTGTTCGACACTTCAGTCACTTTTGACTACACCTTCGAGGCTCACAATTCTTTGTTCGAGATTTGAGGATTCTATCGACATGGCTAAGTTTAGAGCATGGCTCTGATACCATGTTAGGAATCACGACTCTCCACAACGGTATGAGATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTCCCCAAAATGCCTCATACCAATAGGGATAGTATTCCTCACTTATAAATCCATGATCTTCCACTAAATTAACCAAGGTGGGACTCACTCCAAACCAAATAATCTTAGTACTAGCAACTATTCTCTCAAGCCAGACAGAGTTTTTGTACAAACTTCCAAGGAGCCATGGAAGTCTATTCTAAATTTGTTGAAACTGGTTTACAATCATATTGTAGTTAAGAATAGGGAGAGGAGACAAAACTCTATTTTGGAAAGATGCTTGGTTGGGAGCACAAAATTTTCAATCTTAGTATCCCTCTCTTTACTATCTTTCCCTTAGGGCCTTACTTTTAAGCTTCTTCATTTTGTCATTAATTGAATTCTTGAACATCTGTTCTATCTTCCTCTGCTAAAAAGATTTAGATTTTGTCTTTCTGTTTTTATAATGTCTGTTTCAGACTCTATTGATATGATAATCGGTTCATATGATTTTTGCCTACTTTCATTAAAATGCTAATGGGTTCATATGATAATGATCGTACTTCAGTGAACCGGCATAACAATGATATCTATACTGCATATTGGAGGGTAGATCTGCCATTAGTTGATGGCTGATGTTCAACACAACACATTCTTGTTGATTTTAAATTTGTTTTGATACATTCTTTACACATTTGTGTAATTTCCTTATTTGTACTGTTACCAATGCCCATTGTTCTTATTTGCAGATTATGGGACTGACCTTCTCATCCATCCACTCTGTTTACATTTATGTCCAGGGAGTTGACTATGAGGTA

mRNA sequence

ATGTTGAAGGCGAAGAAGAGTCTGAGGAAGGCGGTTGTGCCGCCTACTCTCGTCGGCATTCCTTCTCCCGGAAACCTCCAGCCACTCGTCTCACCCTCCATTAACGCATCTCTCCTTCTTTACCGGCTATTCATCAACCCGAAGCCTTTTCTTTTCCATCTCTTTCAATGTCTCTCAAGCTTTCTCACTGTCTTGGTTAGTCCGGATCGTTCTTCGTGCTGGCTCCTCATCGCTTCTGGTTCCCGTGTTTTTGAACTCCAGATTATGGGACTGACCTTCTCATCCATCCACTCTGTTTACATTTATGTCCAGGGAGTTGACTATGAGGTA

Coding sequence (CDS)

ATGTTGAAGGCGAAGAAGAGTCTGAGGAAGGCGGTTGTGCCGCCTACTCTCGTCGGCATTCCTTCTCCCGGAAACCTCCAGCCACTCGTCTCACCCTCCATTAACGCATCTCTCCTTCTTTACCGGCTATTCATCAACCCGAAGCCTTTTCTTTTCCATCTCTTTCAATGTCTCTCAAGCTTTCTCACTGTCTTGGTTAGTCCGGATCGTTCTTCGTGCTGGCTCCTCATCGCTTCTGGTTCCCGTGTTTTTGAACTCCAGATTATGGGACTGACCTTCTCATCCATCCACTCTGTTTACATTTATGTCCAGGGAGTTGACTATGAGGTA

Protein sequence

MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSSFLTVLVSPDRSSCWLLIASGSRVFELQIMGLTFSSIHSVYIYVQGVDYEV
Homology
[Close]
BLAST of Carg15797 vs. NCBI nr
Match: XP_022939343.1 (uncharacterized protein LOC111445286 isoform X1 [Cucurbita moschata] >XP_022939344.1 uncharacterized protein LOC111445286 isoform X1 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRKAVVPP L+G PSPGNLQP                               +
Sbjct: 1  MLKA-KGLRKAVVPPALIGDPSPGNLQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSC++ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCYVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. NCBI nr
Match: XP_022992894.1 (uncharacterized protein LOC111489092 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRKAVVPP L+G PSPGNLQP                               +
Sbjct: 1  MLKA-KGLRKAVVPPALIGDPSPGNLQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSC++ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCYVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. NCBI nr
Match: XP_023550817.1 (uncharacterized protein LOC111808847 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRKAVVPP L+G PSPGNLQP                               +
Sbjct: 1  MLKA-KGLRKAVVPPALIGDPSPGNLQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSC++ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCYVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. NCBI nr
Match: XP_011656631.1 (PREDICTED: uncharacterized protein LOC101213824 isoform X1 [Cucumis sativus] >KGN46130.1 hypothetical protein Csa_6G056480 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 40/88 (45.45%), Postives = 46/88 (52.27%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRKAVVP  L+  PSPGN+QP                               +
Sbjct: 1  MLKA-KGLRKAVVPSILIDNPSPGNIQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSCW+ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCWVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. NCBI nr
Match: XP_008441506.1 (PREDICTED: uncharacterized protein LOC103485610 isoform X1 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-05
Identity = 39/88 (44.32%), Postives = 45/88 (51.14%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRK VVP  L+  PSPGN+QP                               +
Sbjct: 1  MLKA-KGLRKVVVPSILMDHPSPGNIQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSCW+ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCWVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. TrEMBL
Match: tr|A0A0A0K8Q9|A0A0A0K8Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056480 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06
Identity = 40/88 (45.45%), Postives = 46/88 (52.27%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRKAVVP  L+  PSPGN+QP                               +
Sbjct: 1  MLKA-KGLRKAVVPSILIDNPSPGNIQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSCW+ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCWVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. TrEMBL
Match: tr|A0A1S3B4D3|A0A1S3B4D3_CUCME (uncharacterized protein LOC103485610 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485610 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 39/88 (44.32%), Postives = 45/88 (51.14%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRK VVP  L+  PSPGN+QP                               +
Sbjct: 1  MLKA-KGLRKVVVPSILMDHPSPGNIQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSCW+ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCWVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. TrEMBL
Match: tr|A0A1S4DUP4|A0A1S4DUP4_CUCME (uncharacterized protein LOC103485610 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485610 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 39/88 (44.32%), Postives = 45/88 (51.14%), Query Frame = 0 

Query: 1  MLKAKKSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSS 60
          MLKA K LRK VVP  L+  PSPGN+QP                               +
Sbjct: 1  MLKA-KGLRKVVVPSILMDHPSPGNIQP-------------------------------T 56

Query: 61 FLTVLVSPDRSSCWLLIASGSRVFELQI 89
           L + VSPD SSCW+ IASGSRVF+LQI
Sbjct: 61 RLALHVSPDGSSCWVFIASGSRVFKLQI 56

[Close]
BLAST of Carg15797 vs. TrEMBL
Match: tr|A0A1U8KZJ2|A0A1U8KZJ2_GOSHI (uncharacterized protein LOC107920886 OS=Gossypium hirsutum OX=3635 GN=LOC107920886 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 34/83 (40.96%), Postives = 41/83 (49.40%), Query Frame = 0 

Query: 6   KSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSSFLTVL 65
           KSLRKAVVPPTL+  PSPGNLQ                               S+ L + 
Sbjct: 71  KSLRKAVVPPTLLENPSPGNLQ-------------------------------STRLALH 122

Query: 66  VSPDRSSCWLLIASGSRVFELQI 89
           V+ D SSCW+ IASG  ++ LQI
Sbjct: 131 VNEDSSSCWVYIASGCNIYRLQI 122

[Close]
BLAST of Carg15797 vs. TrEMBL
Match: tr|A0A0D2M9N1|A0A0D2M9N1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G114900 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 34/83 (40.96%), Postives = 41/83 (49.40%), Query Frame = 0 

Query: 6  KSLRKAVVPPTLVGIPSPGNLQPLVSPSINASLLLYRLFINPKPFLFHLFQCLSSFLTVL 65
          KSLRKAVVPPTL+  PSPGNLQ                               S+ L + 
Sbjct: 8  KSLRKAVVPPTLLENPSPGNLQ-------------------------------STRLALH 59

Query: 66 VSPDRSSCWLLIASGSRVFELQI 89
          V+ D SSCW+ IASG  ++ LQI
Sbjct: 68 VNEDSSSCWVYIASGCNIYRLQI 59

The following BLAST results are available for this feature:
BLAST of Carg15797 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939343.11.1e-0647.73uncharacterized protein LOC111445286 isoform X1 [Cucurbita moschata] >XP_0229393... [more]
XP_022992894.11.1e-0647.73uncharacterized protein LOC111489092 isoform X2 [Cucurbita maxima][more]
XP_023550817.11.1e-0647.73uncharacterized protein LOC111808847 [Cucurbita pepo subsp. pepo][more]
XP_011656631.11.2e-0545.45PREDICTED: uncharacterized protein LOC101213824 isoform X1 [Cucumis sativus] >KG... [more]
XP_008441506.16.1e-0544.32PREDICTED: uncharacterized protein LOC103485610 isoform X1 [Cucumis melo][more]
BLAST of Carg15797 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg15797 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15797 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K8Q9|A0A0A0K8Q9_CUCSA8.2e-0645.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056480 PE=4 SV=1[more]
tr|A0A1S3B4D3|A0A1S3B4D3_CUCME4.1e-0544.32uncharacterized protein LOC103485610 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4DUP4|A0A1S4DUP4_CUCME4.1e-0544.32uncharacterized protein LOC103485610 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1U8KZJ2|A0A1U8KZJ2_GOSHI4.5e-0440.96uncharacterized protein LOC107920886 OS=Gossypium hirsutum OX=3635 GN=LOC1079208... [more]
tr|A0A0D2M9N1|A0A0D2M9N1_GOSRA4.5e-0440.96Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G114900 PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15797-RACarg15797-RAmRNA