Carg15783 (gene) Silver-seed gourd

Overview
NameCarg15783
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRNA-binding protein like
LocationCucurbita_argyrosperma_scaffold_055 : 322328 .. 327183 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTACGGTAATTCGGTGCGGGATTTGATAAATTGATCGCGTAATATCTACGGGGAGATCTTGCGTATCGGATCGTTGTGTGTTCGTGGGGCTTCGCTTCTGCGTCTAGAATCAACAACGCACAGCTCTAAATTAATCGCCTGTTTTAGGGTTTTAGTAATCTCTAAATTCTGCTTGAAGGTTCATACATTTGTCTCCAGTTTTTCCAAGATCGCTCTTTCCCTTTGTCTGCTGCCTCTCTTTGAAGCTCTAATTTTGAAAAACTGCAGCATATATGGCGGATGATTATTGGAATCGGCAACAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTGCTGAATATGGTATGCCTATGTGTTTATTATGTTTAATTTGGTTTCTTTTTTTGATTTCGTGAGCATTCTTGTTGCGTTTGATGGTATTGCAGCTGTTCGATGGTGAATTTTGATGGGCTTAATTCCTTAAAAGTGTCTGAAAACTAATGAAAACGTTCTTGTATTGTTTGTTTTGATTTGTTAATTTAGTTGTGAATAATCAGTGTTCGTAAAGCAATTGAATTCGGGTTTGTTCTGATAAAGTTGTAGTTGAAAATTCTGAATGGAGAATGTATCTGATCCGAGAGGAAATACTACTGCGGAGTGATGTCTGTCACGGCATATTAGAACAATTTGATGGTCCAATGCACTTCATCTGATAGTTGAGAGAACACAATTTTTCTTTTTTGGTTCTAGTGGTGGATGTGCAGCCAAGTTCTTCAAAAACCAGTAAAAGGGCCTTACTAAAGGGTTTTTTGTTCTTGATTTCAGTAACATTTGGCGGTGGGGAGATTTTGGGCCTTATTAAAGATTACAATCTGAGGTCCCTAGGATGAAAACCTGATAGGTATCTCATTTATTTATCATTAGAAAACAAGTTAGAGATTATAGCCTATTGATAAGTGACTGATTCGAGAGGGCCAACCTTCTCTCCTGGAAAACACACCCTATCCAAACTACAGGAAGATATATTTCCCAAAAAAGTTATGTGTATGTTCCATATATATATATATATATATATATATCTATATAAAGGGAACATACACATAACTTTCTTGGGAAGTTATAAGTCCCTTTCTAACTTCCTATTCAAATTTTCAAACATAAAAACTGTCTAGAAAACTGAATACTCTAAGCACCGTTCGGAAGTGAATTCCCCTGTTTATTCTTCTTAGCATGAACTGTAGTTAATGAGGTCTAACAAAACCCTAAACCAACAAAGACCCTTTTGTGCTGGAAGCCTTGGTAGTAAGTAGAAAATGAAAAGTAGTCCCAATCTAAACTTTATACAATATATTTTTCCAAATGCACCTACCTATTTTAAGCCCCTCCTTAAGCCATCCGCAGTGGTAGTTGAAAAATGCTGTAGGAATTCCTTGTGGAAAGATGGAACTTAAGTCGAAGGAAGTTATCTTGTTATTTAGTGTAAGGATCCAACTCTTTAAGCTGGAAGGATTGTTACCACATGGATGCGTGAGTGGACTTTTGAAAGTAAAACAGAACATGAGTAAGCTAAACAAAAAGCGTTTCAATAATAAATACTAATTAAAATTCAAAGAAACCTTGAGTTTGGGATCCCAACGAAACATTTATTTTCAAAGCTTAACGAATATATATTTAAAATAATTACAAATCAAGTAATGGAAGTATGGAGTGTAAAACATGAATGGGAAAATTTAGCAAGTTTTAGTTTGATATTGTCTTTGTAGTCTCGCTAACCGGAATGCCCTCACCGCACACCTTGTAGATTCATGTACCATATGAAAAGGAAAGACAGGTAGCATGAGTGAGTATAAAAAAATATTCGGTAAGTAGCCTCACGTGAGAGGCTGAAACTGTATTCGTACTTTAAACTCATGATATTGAAAACATGCAAAGTCCTGGCTAATTATACGCCAATGTGTTCTGATACATAAGGGCCTTAATTGAAAATATGGAAACATCATGTCTAAGTGAACAATTGGCCAATCCCAAACTATACCAACTACATTGCTTCCGTGGGTCAGTCCAGTAGATAAAATGTCACTAGAGATTAGTTGACAACTCTTTAGTAATGTTAGACCTATCCCATCATAGCACCTCATGAAAGCATTCCTGATCATCAACTATAGTGCCTATGCTGGTCATTCCTGGAAGACCAAGCGAGTTAGTTGGTGGCGCTCTTTAATGGAGCTAGACCTTCCTAACATAATACGTATGAAAAATTTTCAGCTAATATATAAGGGACTGATCCCAAAGCTGAACCAACTATGGGTATTGAAAGACAGGACACCGCTAAGGTTAGTTGACGACCCTCTAGTAGAACCCAGCCTATTCCAACATAATACCTCATGAAAAACATACATAGCGTAACGTGCAGGGAAAGACAATTGTCACAAGGATCATCATGAACTTAGGAATAAACATACATGTAACTGAGATCCTCTAATCATGCTAAACACTATATCATTCATCACCAGACCATTTAAAACTCAGACCCCTCTAGTCACCATGCTAGATAACATACTTAACATCACAGTCTATTCCAAAACCGATGATCCAATAGTTCACATATGCATTCCATATTTCCTGTACTCCAAAACTTTGGATATAAACTACCATGGGTTGGCCTAGCCAATAAGGGGCAGGTAAGTAATAAAAGGGGTTTAGAGGGAATGAATACAAGTCATGGTGGCCACCCACCTAGGATTTAATATCCTACCTATTTCCTTGGCAAGTAACTATAGTATAGTTAAGCAGCTGTCCCATGAGAATAGTTGAGGTGTGCAAAATCTGGCCTAGACATGAGGATCAGGCTCGTGATCTTCTACCATAATAATGTTTAGATACTTCCATAAATTTTGTTTGGGCTTGATCCACATTTGTTATGTATAATTTCTGACATTGCTATAGTTTTTAAGCCTTTCTGAAGGAATTTTTCACTCGATTTCCCAAAGTAGATACTGAGGATTTTTTTTTTTAGATTGAAAGAAAATTTCTTGATTTGCAAATGGTTTCTTTAGACCTTCGATTTATAGAGGTTCCTCGTCCATCTAACTTAACGTAATGTTATATTTTGGATTGCGAGGATAATGAGATTAGATGTGTGGAATATGTGCATGACTGAACTGTTAGAACGATTTATTTAAATAGTAAAAGAGGAATTCTATACTGATTGAACATTATTGTTTCAATTGAATATTACTATAGATAGTCCTGGACCTATTTTCTTAGACATATCTTTTATTCCTTCGATGTAGTGGCATCTGTTGTTTAACGTCTGGAATAAGCTCATTTTGTTTTGTTTTGTTTTGTTAGCAGTTTTCCTCCTTTTTTTTTTAAGAAAATAAAAAATAATAAAATGGAAATGGATTTAGACCTTTCTTCTGTCTTCAGAACTTCCATCCTCTGGATTTCCTCCCGGGCATGATATGCACAATCATTTAGCTAGTGATGATCGTAGTGGTCCTCCGGCTGTAAAAGATACACAAGCAATAGGGTCAGCATATGATCGTTATCTCCAAAGTGTGGTATGAATGAAATCTACATTTATTTTCTCTTCTTGCATCCAGTTTGAGTGCTGAAAACTTGTCATAATTGTTTTTGAAGCAACTTTCTTCTGCTGCATCCGGAGAAGTACCTACCCTTGGGGAAATGGGGATGGGAAGGCCTATTGCGAACAGAATCCCAGTTGGGAGTAGAATGCCTGGGCCTTTAATTCCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTCTCTCCTGATCTCGCACCAAATGGTCGGAATATCGAGTATGGTAATCATCTTCCGGTAGAGTCAATGAACAGACCCGGACGCGAAACTGTGCCTCTTCCTCCTGATGCCTCAAACACTTTATATGTTGAAGGACTTCCGTCTGATAGCTCCAGGAGGGAAGTAGCTCGTATCCTTTTTCTCAGTGTTGATGCCTCTGCAAAACTATATTGATTTTTCTCTTCCCTTGCAATTATCTACTTAAAAAATTGCATTCCTTTACGTCGATATAGATATTTTCCGTCCCTTCGTGGGATATAAAGAACTGAGACTTGTGAGCAAAGAATCTAAACATGTAATAGACCCTTGTTTTTTATTTACCTTTGATAACTCCCAGGCACGTGCTAATGTTTACTTCGTTTTTCATGTCGCATTTGTTTCGATATATAGCGTGGTGGGGACCCTCTTATATTATGCTTTGTAGATTTTGCAAACGCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTACAAATTTCTTCCGCATATGCTTTTGCAGTTTTTATAGAAGCAATATTTTCCCGTTGTCAGTTCTTATAGACAGTTTTTCTAGGTACATGTTTAGTTCATTTTTCTGCTTTAAATGGACAAAATTTGCAAGTAGTCTGATCTTTTTGTTGAAAGAATTCAAAAGAGATGCTAAAAAACTGTCTGATCTGCACAGGTTATAAAATGGATGAACAAGACCCGGATTCTAACTACTTAAGACTACAGTTCTCACGGCATCCAGGGCCGAGGTCTGGCGCTGGAGGATCAGGCGGCAAAAGGTGAATAAGGTTGAGAGACAGGACGATGACCAATTTAAATGGGAAACTTTCGTCTTCTGGTGCACATTGTACTAGCTGCTCTGCTTGTACGCCCATTATTATATGTTCTTAGAGATGCTGTTAAGATAGGCAAATTTTAGACGACCCCATATTGAAGTTGCATGTAAATTTAAGAGGCTTAGATTCAGAGGGTTTCAATGGTCAAACAATTTGAACGAATATGGTATTTGTTGAAAGAAGAGTACACAAAGTGATTATTTTTAATTGATTT

mRNA sequence

TTTACGGTAATTCGGTGCGGGATTTGATAAATTGATCGCGTAATATCTACGGGGAGATCTTGCGTATCGGATCGTTGTGTGTTCGTGGGGCTTCGCTTCTGCGTCTAGAATCAACAACGCACAGCTCTAAATTAATCGCCTGTTTTAGGGTTTTAGTAATCTCTAAATTCTGCTTGAAGGTTCATACATTTGTCTCCAGTTTTTCCAAGATCGCTCTTTCCCTTTGTCTGCTGCCTCTCTTTGAAGCTCTAATTTTGAAAAACTGCAGCATATATGGCGGATGATTATTGGAATCGGCAACAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTGCTGAATATGAACTTCCATCCTCTGGATTTCCTCCCGGGCATGATATGCACAATCATTTAGCTAGTGATGATCGTAGTGGTCCTCCGGCTGTAAAAGATACACAAGCAATAGGGTCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTGCTGCATCCGGAGAAGTACCTACCCTTGGGGAAATGGGGATGGGAAGGCCTATTGCGAACAGAATCCCAGTTGGGAGTAGAATGCCTGGGCCTTTAATTCCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTCTCTCCTGATCTCGCACCAAATGGTCGGAATATCGAGTATGGTAATCATCTTCCGGTAGAGTCAATGAACAGACCCGGACGCGAAACTGTGCCTCTTCCTCCTGATGCCTCAAACACTTTATATGTTGAAGGACTTCCGTCTGATAGCTCCAGGAGGGAAGTAGCTCATATTTTCCGTCCCTTCGTGGGATATAAAGAACTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCTCTTATATTATGCTTTGTAGATTTTGCAAACGCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGATGAACAAGACCCGGATTCTAACTACTTAAGACTACAGTTCTCACGGCATCCAGGGCCGAGGTCTGGCGCTGGAGGATCAGGCGGCAAAAGGTGAATAAGGTTGAGAGACAGGACGATGACCAATTTAAATGGGAAACTTTCGTCTTCTGGTGCACATTGTACTAGCTGCTCTGCTTGTACGCCCATTATTATATGTTCTTAGAGATGCTGTTAAGATAGGCAAATTTTAGACGACCCCATATTGAAGTTGCATGTAAATTTAAGAGGCTTAGATTCAGAGGGTTTCAATGGTCAAACAATTTGAACGAATATGGTATTTGTTGAAAGAAGAGTACACAAAGTGATTATTTTTAATTGATTT

Coding sequence (CDS)

ATGGCGGATGATTATTGGAATCGGCAACAGCCTCTGCTTCCCTCGCCTGGCATGCTTAAACGACCTCGTGCTGAATATGAACTTCCATCCTCTGGATTTCCTCCCGGGCATGATATGCACAATCATTTAGCTAGTGATGATCGTAGTGGTCCTCCGGCTGTAAAAGATACACAAGCAATAGGGTCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTGCTGCATCCGGAGAAGTACCTACCCTTGGGGAAATGGGGATGGGAAGGCCTATTGCGAACAGAATCCCAGTTGGGAGTAGAATGCCTGGGCCTTTAATTCCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTCTCTCCTGATCTCGCACCAAATGGTCGGAATATCGAGTATGGTAATCATCTTCCGGTAGAGTCAATGAACAGACCCGGACGCGAAACTGTGCCTCTTCCTCCTGATGCCTCAAACACTTTATATGTTGAAGGACTTCCGTCTGATAGCTCCAGGAGGGAAGTAGCTCATATTTTCCGTCCCTTCGTGGGATATAAAGAACTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCTCTTATATTATGCTTTGTAGATTTTGCAAACGCAGCCTGTGCAGCAACTGCCATGAGTGCATTGCAAGGTTATAAAATGGATGAACAAGACCCGGATTCTAACTACTTAAGACTACAGTTCTCACGGCATCCAGGGCCGAGGTCTGGCGCTGGAGGATCAGGCGGCAAAAGGTGA

Protein sequence

MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAIGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQFSRHPGPRSGAGGSGGKR
Homology
[Close]
BLAST of Carg15783 vs. NCBI nr
Match: XP_023515368.1 (RNA-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023515372.1 RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 523.5 bits (1347), Expect = 4.1e-145
Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSSAASGEVPT+GEMGMGRPIANRIPVGSRMPGP IPDPVVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSAASGEVPTIGEMGMGRPIANRIPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSGGKR 259
           FSRHPGPRSG GGSGGKR
Sbjct: 241 FSRHPGPRSGTGGSGGKR 258

[Close]
BLAST of Carg15783 vs. NCBI nr
Match: XP_022922619.1 (RNA-binding protein 2-like [Cucurbita moschata] >XP_022922627.1 RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 522.7 bits (1345), Expect = 7.1e-145
Identity = 255/258 (98.84%), Postives = 255/258 (98.84%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGP IPDPVVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDL PNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP
Sbjct: 121 SPDLTPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSGGKR 259
           FSRHPGPRSG GGSGGKR
Sbjct: 241 FSRHPGPRSGTGGSGGKR 258

[Close]
BLAST of Carg15783 vs. NCBI nr
Match: XP_022989796.1 (RNA-binding protein 2-like [Cucurbita maxima] >XP_022989798.1 RNA-binding protein 2-like [Cucurbita maxima])

HSP 1 Score: 518.1 bits (1333), Expect = 1.7e-143
Identity = 252/258 (97.67%), Postives = 255/258 (98.84%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSPGMLKRPR EYELPSSGFPPGHDMH+HL+SDDRSGPPAVKDTQAI
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRVEYELPSSGFPPGHDMHSHLSSDDRSGPPAVKDTQAI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGP IPDPVVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLPVES+NRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPVESINRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSGGKR 259
           FSRHPGPRSG GGSGGKR
Sbjct: 241 FSRHPGPRSGTGGSGGKR 258

[Close]
BLAST of Carg15783 vs. NCBI nr
Match: XP_022993916.1 (RNA-binding protein 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 437.6 bits (1124), Expect = 3.0e-119
Identity = 218/258 (84.50%), Postives = 229/258 (88.76%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSPGMLKRPR EYE PSSG P  H+MHN++A+DD  GP AVKDTQ I
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRTEYEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSS  SGEVPT GEMGMGRP+A           PL+PDPVVMSRP AV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPLAXXXXXXXXXXXPLLPDPVVMSRPLAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDLA NGRNIEYGNHLPV+S NRP RETVPLPPDA+NTLYVEGLPSDSSRREVAHIFRP
Sbjct: 121 SPDLALNGRNIEYGNHLPVDSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLV+KESKHRGGDPLILCFVDFAN ACAATAMSALQGYKMDEQDP+SNYLRLQ
Sbjct: 181 FVGYKELRLVTKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSGGKR 259
           FSRHPGPRSG+ GSGGKR
Sbjct: 241 FSRHPGPRSGS-GSGGKR 257

[Close]
BLAST of Carg15783 vs. NCBI nr
Match: XP_022141348.1 (RNA-binding protein 2-like [Momordica charantia])

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 206/258 (79.84%), Postives = 216/258 (83.72%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSPGMLKRPR +YELPSSG P GH+MHN+L SDDR GP AVKDTQ I
Sbjct: 1   MADDYWNRQQPLLPSPGMLKRPRNDYELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSS  SGEVPT G+MGM RP+ANR+PVGSRMPGP IPDPVVMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFNSGEVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLP++SM                            RREVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPMDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFAN ACAATAMSALQGYKMDEQDP+SNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSGGKR 259
           FSRHPGPRSG+ GSGGKR
Sbjct: 241 FSRHPGPRSGS-GSGGKR 257

[Close]
BLAST of Carg15783 vs. TAIR10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-61
Identity = 128/234 (54.70%), Postives = 164/234 (70.09%), Query Frame = 0 

Query: 29  PSSGFP---PGHDMHNHLASD-DRSGPPAVKDTQAIGSAYDRYLQSVQLSSAASGEVPTL 88
           P  G P   P  DMH++L+ D DR  P +VKDT++IGSAYDRYLQS+Q     S E    
Sbjct: 199 PQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPF 258

Query: 89  GEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPVESMNR 148
             +GM R   + +     MPGP + + ++     ++  D  PNGR++ +G    ++S+ R
Sbjct: 259 NGVGMVRQGGSNM-----MPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGR 318

Query: 149 PGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLIL 208
           PGRE  PLPPD SNTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLV+++SKHR GDP +L
Sbjct: 319 PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVL 378

Query: 209 CFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQFSRHPGPRSGAGGSGGKR 259
           CFVDF N+ACAATA+SALQ Y+MDE +PDS  LRLQF R+PGPR G    GG+R
Sbjct: 379 CFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ--RGGRR 421

[Close]
BLAST of Carg15783 vs. TAIR10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 218.0 bits (554), Expect = 6.8e-57
Identity = 131/254 (51.57%), Postives = 155/254 (61.02%), Query Frame = 0 

Query: 1   MADDYWNRQ-QPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQA 60
           MAD YWN+Q Q   P  G +KRPR+++E PSS    GH    +   +D   P    DT+ 
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDEDLDVP----DTRT 60

Query: 61  IGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPA 120
           IGSAYDRYLQSVQ     SGE    G + MG                   D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGEG---GSVSMG---XXXXXXXXXXXXXXTIDDFMLRRGGV 120

Query: 121 VSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFR 180
           +  D  PNG  I +    PV   N        LP DASNTLYVEGLPS+ SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGFDPPEPVGRRN--------LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRL 240
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF N ACAATA+SALQGY+MDE + DS +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 231

Query: 241 QFSRHPGPRSGAGG 254
           QFSR PG R G  G
Sbjct: 241 QFSRKPGSRPGQRG 231

[Close]
BLAST of Carg15783 vs. Swiss-Prot
Match: sp|G7ID19|RBP2_MEDTR (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.4e-80
Identity = 154/261 (59.00%), Postives = 194/261 (74.33%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSP-GMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQA 60
           MAD +WNRQQ  LP P GMLKRPR EY+   SG   G+++HN++A +  +G   + DT+ 
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQN--NGHQMLNDTKI 60

Query: 61  IGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPA 120
           +GSAYDR+LQS  L+S  SGE   +G +G  R +         +PG  + DP  M     
Sbjct: 61  LGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGV-------GELPGHSLGDPSAMGHLSG 120

Query: 121 V--SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHI 180
           V   PDL+ NGR++ +G  LP+++++RPG ET+PLP DAS+TLYVEGLPSDS++REVAHI
Sbjct: 121 VGGGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHI 180

Query: 181 FRPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYL 240
           FRPFVGY+E+RLV+KESKHRGGDPLILCFVDFAN ACAATA+SALQGYK+DE +P+S+YL
Sbjct: 181 FRPFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYL 240

Query: 241 RLQFSRHPGPRSGAGGSGGKR 259
           RLQFSR PG RSG  G  GKR
Sbjct: 241 RLQFSRSPGRRSGGPGPRGKR 252

[Close]
BLAST of Carg15783 vs. Swiss-Prot
Match: sp|Q8H0P8|RBP1_MEDTR (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.3e-80
Identity = 155/251 (61.75%), Postives = 187/251 (74.50%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MAD YWNRQQ LLP  G+ KRPR +YE+P+SG P G++MH     +DRSG P VKD++ I
Sbjct: 1   MADGYWNRQQSLLPHSGLHKRPRPDYEMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVM-SRPPA 120
           GSAYDRYLQ  Q+ S  SGE  T+G +G+ R I         +P   + DP  M  R   
Sbjct: 61  GSAYDRYLQG-QVPSFTSGEASTVGALGLQRGIGG-------LPNHSLSDPSAMIGRHGG 120

Query: 121 VSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFR 180
             PDLAPNGR + YG   P++ ++R G E   LPPDAS TLY+EGLPSD +RREVAHIFR
Sbjct: 121 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRL 240
           PFVGY+E+RLVSKE+KHR GDPLILCFVDFAN ACAATA+SALQGYK+DE +P+S++LRL
Sbjct: 181 PFVGYREVRLVSKEAKHR-GDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRL 240

Query: 241 QFSRHPGPRSG 251
           QFSR+PGPRSG
Sbjct: 241 QFSRYPGPRSG 242

[Close]
BLAST of Carg15783 vs. Swiss-Prot
Match: sp|F4HWF9|NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.1e-60
Identity = 128/234 (54.70%), Postives = 164/234 (70.09%), Query Frame = 0 

Query: 29  PSSGFP---PGHDMHNHLASD-DRSGPPAVKDTQAIGSAYDRYLQSVQLSSAASGEVPTL 88
           P  G P   P  DMH++L+ D DR  P +VKDT++IGSAYDRYLQS+Q     S E    
Sbjct: 199 PQEGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPF 258

Query: 89  GEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPVESMNR 148
             +GM R   + +     MPGP + + ++     ++  D  PNGR++ +G    ++S+ R
Sbjct: 259 NGVGMVRQGGSNM-----MPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGR 318

Query: 149 PGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLIL 208
           PGRE  PLPPD SNTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLV+++SKHR GDP +L
Sbjct: 319 PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVL 378

Query: 209 CFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQFSRHPGPRSGAGGSGGKR 259
           CFVDF N+ACAATA+SALQ Y+MDE +PDS  LRLQF R+PGPR G    GG+R
Sbjct: 379 CFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ--RGGRR 421

[Close]
BLAST of Carg15783 vs. Swiss-Prot
Match: sp|A1A6K6|NSRA_ARATH (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-55
Identity = 131/254 (51.57%), Postives = 155/254 (61.02%), Query Frame = 0 

Query: 1   MADDYWNRQ-QPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQA 60
           MAD YWN+Q Q   P  G +KRPR+++E PSS    GH    +   +D   P    DT+ 
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDEDLDVP----DTRT 60

Query: 61  IGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPA 120
           IGSAYDRYLQSVQ     SGE    G + MG                   D  ++ R   
Sbjct: 61  IGSAYDRYLQSVQ-----SGEG---GSVSMG---XXXXXXXXXXXXXXTIDDFMLRRGGV 120

Query: 121 VSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFR 180
           +  D  PNG  I +    PV   N        LP DASNTLYVEGLPS+ SRREVAHIFR
Sbjct: 121 LPLDHGPNGHTIGFDPPEPVGRRN--------LPSDASNTLYVEGLPSNCSRREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRL 240
           PFVGY+E+RLV+K+SKHR GDP++LCFVDF N ACAATA+SALQGY+MDE + DS +LRL
Sbjct: 181 PFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRL 231

Query: 241 QFSRHPGPRSGAGG 254
           QFSR PG R G  G
Sbjct: 241 QFSRKPGSRPGQRG 231

[Close]
BLAST of Carg15783 vs. Swiss-Prot
Match: sp|Q6JB11|MEG5_MAIZE (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 142 MNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDP 201
           M   GR   PLPPDAS+TLY+EGLP++ +RREV+HIFRPFVG++E+RLV+KES+H GGDP
Sbjct: 22  MGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDP 81

Query: 202 LILCFVDFANAACAATAMSALQGYKMDE 230
            +LCFVDF N A A  A+ ALQG+  D+
Sbjct: 82  HVLCFVDFDNPAQATIALEALQGHVTDD 109

[Close]
BLAST of Carg15783 vs. TrEMBL
Match: tr|A0A1S3B4F0|A0A1S3B4F0_CUCME (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 8.1e-105
Identity = 194/255 (76.08%), Postives = 203/255 (79.61%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASDDRSGPPAVKDTQAI 60
           MADDYWNRQQPLLPSP MLKRPR +YELP+SG   GHDMHN+LASDDR GP +VKDTQ I
Sbjct: 1   MADDYWNRQQPLLPSPAMLKRPRTDYELPASGLSTGHDMHNYLASDDRGGPRSVKDTQTI 60

Query: 61  GSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPAV 120
           GSAYDRYLQSVQLSS  SGEVPT GEMGMGRP+ANR        GPL+PDP+VMSRPPAV
Sbjct: 61  GSAYDRYLQSVQLSSFTSGEVPTHGEMGMGRPVANRXXXXXXXXGPLLPDPIVMSRPPAV 120

Query: 121 SPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRP 180
           SPDLAPNGRNIEYGNHLPV+S                              REVAHIFRP
Sbjct: 121 SPDLAPNGRNIEYGNHLPVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVAHIFRP 180

Query: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQ 240
           FVGYKELRLVSKESKHRGGDPLILCFVDFAN ACAATAMSALQGYKMDEQDP+SNYLRLQ
Sbjct: 181 FVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQ 240

Query: 241 FSRHPGPRSGAGGSG 256
           FSRHPGPRSG G SG
Sbjct: 241 FSRHPGPRSGFGSSG 255

[Close]
BLAST of Carg15783 vs. TrEMBL
Match: tr|A0A059BU79|A0A059BU79_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02718 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 7.6e-95
Identity = 176/256 (68.75%), Postives = 203/256 (79.30%), Query Frame = 0 

Query: 1   MADDYWNRQQPLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHL-ASDDRSGPPAVKDTQA 60
           M D+YWNRQQP++PSPG+LKRPR EY++P  G P G +M N+L   DD +GP AVKDT+ 
Sbjct: 1   MGDNYWNRQQPVVPSPGLLKRPRLEYDIPPPGMPAGPEMQNYLQRDDDPNGPRAVKDTKT 60

Query: 61  IGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPPA 120
           IGSAYDRYLQS Q+SS   GE    G +GM R I      G  MPG  + DP +MSRP  
Sbjct: 61  IGSAYDRYLQSSQMSSHTPGEASAYGSVGMVRTI------GGGMPGAPVADPSMMSRPGP 120

Query: 121 VSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFR 180
           ++P++APNGRN  +G   P+E+M RPGRETVPLPPDAS+TLYVEGLP DS++REVAHIFR
Sbjct: 121 IAPEMAPNGRNAGFGGPHPMEAMGRPGRETVPLPPDASSTLYVEGLPPDSTKREVAHIFR 180

Query: 181 PFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRL 240
           PFVGYKE+RLV KESKHRGGDPLILCFVDF N ACAATA+SALQGYKMDE DPDS YLRL
Sbjct: 181 PFVGYKEVRLVIKESKHRGGDPLILCFVDFVNPACAATALSALQGYKMDEHDPDSAYLRL 240

Query: 241 QFSRHPGPRSGAGGSG 256
           QFSR+PGPRSGAG  G
Sbjct: 241 QFSRYPGPRSGAGPRG 250

[Close]
BLAST of Carg15783 vs. TrEMBL
Match: tr|A0A1U8K798|A0A1U8K798_GOSHI (RNA-binding protein 2 OS=Gossypium hirsutum OX=3635 GN=LOC107914118 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 8.4e-94
Identity = 180/259 (69.50%), Postives = 203/259 (78.38%), Query Frame = 0 

Query: 1   MADDYWNRQQ---PLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASD-DRSGPPAVKD 60
           MAD YWNR+Q   P+L S G LKRPR EY+ P SG  P H+MHN+LA D DR G   VKD
Sbjct: 1   MADGYWNRRQPTPPMLSSSGALKRPRTEYDGPPSGLHPSHEMHNYLARDSDRGGHLPVKD 60

Query: 61  TQAIGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSR 120
           T+ IGSAYDRYLQS Q+SS  SGE  T G  G+G+      PVG  MP   I DP VM R
Sbjct: 61  TKTIGSAYDRYLQSAQISSFPSGEARTFG--GLGK------PVGGAMPARPIADPPVMGR 120

Query: 121 PPAVSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAH 180
           P + +PD+ PNGRN+ YGN LP+++M+R GR+TVPLPPDASNTLYVEGLPSDS+RREVAH
Sbjct: 121 PGSAAPDMVPNGRNVGYGNQLPLDAMSRLGRDTVPLPPDASNTLYVEGLPSDSTRREVAH 180

Query: 181 IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNY 240
           IFRPFVGYKE+RLVSKE +HRGGDPLILCFVDF   ACAATAMSALQGYK+DE DPDSNY
Sbjct: 181 IFRPFVGYKEVRLVSKEFRHRGGDPLILCFVDFTTPACAATAMSALQGYKIDEHDPDSNY 240

Query: 241 LRLQFSRHPGPRSGAGGSG 256
           LRLQFSR+PGPRSG G  G
Sbjct: 241 LRLQFSRYPGPRSGPGARG 251

[Close]
BLAST of Carg15783 vs. TrEMBL
Match: tr|A0A0D2S813|A0A0D2S813_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G253100 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 8.4e-94
Identity = 180/259 (69.50%), Postives = 203/259 (78.38%), Query Frame = 0 

Query: 1   MADDYWNRQQ---PLLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLASD-DRSGPPAVKD 60
           MAD YWNR+Q   P+L S G LKRPR EY+ P SG  P H+MHN+LA D DR G   VKD
Sbjct: 1   MADGYWNRRQPTPPMLSSSGALKRPRTEYDGPPSGLHPSHEMHNYLARDSDRGGHLPVKD 60

Query: 61  TQAIGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSR 120
           T+ IGSAYDRYLQS Q+SS  SGE  T G  G+G+      PVG  MP   I DP VM R
Sbjct: 61  TKTIGSAYDRYLQSAQISSFPSGEARTFG--GLGK------PVGGAMPARPIADPPVMGR 120

Query: 121 PPAVSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAH 180
           P + +PD+ PNGRN+ YGN LP+++M+R GR+TVPLPPDASNTLYVEGLPSDS+RREVAH
Sbjct: 121 PGSAAPDMVPNGRNVGYGNQLPLDAMSRLGRDTVPLPPDASNTLYVEGLPSDSTRREVAH 180

Query: 181 IFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNY 240
           IFRPFVGYKE+RLVSKE +HRGGDPLILCFVDF   ACAATAMSALQGYK+DE DPDSNY
Sbjct: 181 IFRPFVGYKEVRLVSKEFRHRGGDPLILCFVDFTTPACAATAMSALQGYKIDEHDPDSNY 240

Query: 241 LRLQFSRHPGPRSGAGGSG 256
           LRLQFSR+PGPRSG G  G
Sbjct: 241 LRLQFSRYPGPRSGPGARG 251

[Close]
BLAST of Carg15783 vs. TrEMBL
Match: tr|A0A2I4FW85|A0A2I4FW85_9ROSI (RNA-binding protein 2-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109002561 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 179/260 (68.85%), Postives = 202/260 (77.69%), Query Frame = 0 

Query: 1   MADDYWNRQQP-LLPSPGMLKRPRAEYELPSSGFPPGHDMHNHLA-SDDRSGPPAVKDTQ 60
           MAD YW+RQQ  LLPS  +LKRPR +YEL  S  P  H+M N+L   DDR GP AVKDT+
Sbjct: 1   MADGYWSRQQQHLLPSVSLLKRPRTDYELAPSVLPSAHEMPNYLVRDDDRGGPHAVKDTK 60

Query: 61  AIGSAYDRYLQSVQLSSAASGEVPTLGEMGMGRPIANRIPVGSRMPGPLIPDPVVMSRPP 120
           +IGSAYDRYLQS QLSS  SGE  TL  +G+GR        G  MPGP + DP V+    
Sbjct: 61  SIGSAYDRYLQSAQLSSFTSGEASTLRGVGLGR------VSGGGMPGPAMADPAVLGHTG 120

Query: 121 AVSPDLAPNGRNIEYGNHLPVESMNRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIF 180
            V PDLAPNGRN+  GN LP+++  RPGRET PLPPDAS+TLYVEGLP DS +REVAHIF
Sbjct: 121 IVGPDLAPNGRNVGIGNQLPLDA-TRPGRETQPLPPDASSTLYVEGLPPDSKKREVAHIF 180

Query: 181 RPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLR 240
           RPFVGYKE+RLV+KESKHRGGDPLILCFVDF N ACAATAMSALQGYK D+ DPDS+YLR
Sbjct: 181 RPFVGYKEVRLVTKESKHRGGDPLILCFVDFVNPACAATAMSALQGYKTDDNDPDSSYLR 240

Query: 241 LQFSRHPGPRSGAGGSGGKR 259
           LQFSR+PGPRSG+ GS GKR
Sbjct: 241 LQFSRYPGPRSGS-GSRGKR 252

The following BLAST results are available for this feature:
BLAST of Carg15783 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023515368.14.1e-14598.84RNA-binding protein 2-like [Cucurbita pepo subsp. pepo] >XP_023515372.1 RNA-bind... [more]
XP_022922619.17.1e-14598.84RNA-binding protein 2-like [Cucurbita moschata] >XP_022922627.1 RNA-binding prot... [more]
XP_022989796.11.7e-14397.67RNA-binding protein 2-like [Cucurbita maxima] >XP_022989798.1 RNA-binding protei... [more]
XP_022993916.13.0e-11984.50RNA-binding protein 2-like isoform X2 [Cucurbita maxima][more]
XP_022141348.11.8e-11179.84RNA-binding protein 2-like [Momordica charantia][more]
BLAST of Carg15783 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21320.11.2e-6154.70nucleotide binding;nucleic acid binding[more]
AT1G76940.16.8e-5751.57RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg15783 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|G7ID19|RBP2_MEDTR2.4e-8059.00RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1[more]
sp|Q8H0P8|RBP1_MEDTR9.3e-8061.75RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1[more]
sp|F4HWF9|NSRB_ARATH2.1e-6054.70Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE... [more]
sp|A1A6K6|NSRA_ARATH1.2e-5551.57Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE... [more]
sp|Q6JB11|MEG5_MAIZE4.1e-2763.64Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1[more]
BLAST of Carg15783 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4F0|A0A1S3B4F0_CUCME8.1e-10576.08RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1[more]
tr|A0A059BU79|A0A059BU79_EUCGR7.6e-9568.75Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02718 PE=4 SV... [more]
tr|A0A1U8K798|A0A1U8K798_GOSHI8.4e-9469.50RNA-binding protein 2 OS=Gossypium hirsutum OX=3635 GN=LOC107914118 PE=4 SV=1[more]
tr|A0A0D2S813|A0A0D2S813_GOSRA8.4e-9469.50Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G253100 PE=4 ... [more]
tr|A0A2I4FW85|A0A2I4FW85_9ROSI1.9e-9068.85RNA-binding protein 2-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109002561 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15783-RACarg15783-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 159..235
e-value: 5.7E-4
score: 29.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 160..228
e-value: 2.0E-8
score: 33.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 158..244
score: 11.554
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 152..247
e-value: 1.8E-17
score: 65.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..258
NoneNo IPR availablePANTHERPTHR10501:SF20RNA-BINDING REGION RNP-1 DOMAIN-CONTAINING PROTEINcoord: 1..253
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 1..253
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 134..253

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15783Cla013843Watermelon (97103) v1carwmB0064
Carg15783Csa6G338020Cucumber (Chinese Long) v2carcuB0067
Carg15783MELO3C008389Melon (DHL92) v3.5.1carmeB0066
Carg15783ClCG08G006630Watermelon (Charleston Gray)carwcgB0066
Carg15783CSPI06G17940Wild cucumber (PI 183967)carcpiB0071
Carg15783Cucsa.076960Cucumber (Gy14) v1carcgyB0070
Carg15783CmaCh04G024350Cucurbita maxima (Rimu)carcmaB0088
Carg15783CmaCh15G006120Cucurbita maxima (Rimu)carcmaB0087
Carg15783CmoCh04G025520Cucurbita moschata (Rifu)carcmoB0094
Carg15783CmoCh15G006180Cucurbita moschata (Rifu)carcmoB0092
Carg15783Lsi08G005360Bottle gourd (USVL1VR-Ls)carlsiB059
Carg15783Cp4.1LG13g04190Cucurbita pepo (Zucchini)carcpeB0095
Carg15783Cp4.1LG01g21110Cucurbita pepo (Zucchini)carcpeB0096
Carg15783CsGy6G017450Cucumber (Gy14) v2carcgybB0067
Carg15783MELO3C029972.2Melon (DHL92) v3.6.1carmedB0066
Carg15783CsaV3_6G030780Cucumber (Chinese Long) v3carcucB0073
Carg15783Cla97C08G149420Watermelon (97103) v2carwmbB0063
Carg15783Bhi04G001401Wax gourdcarwgoB0077
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg15783Carg01594Silver-seed gourdcarcarB076
The following block(s) are covering this gene:
GeneOrganismBlock
Carg15783Cucumber (Gy14) v2carcgybB0069
Carg15783Cucumber (Gy14) v1carcgyB0071
Carg15783Cucurbita moschata (Rifu)carcmoB0091
Carg15783Cucurbita moschata (Rifu)carcmoB0093
Carg15783Cucurbita pepo (Zucchini)carcpeB0097
Carg15783Cucumber (Chinese Long) v2carcuB0069
Carg15783Cucumber (Chinese Long) v3carcucB0075
Carg15783Bottle gourd (USVL1VR-Ls)carlsiB058
Carg15783Watermelon (Charleston Gray)carwcgB0065
Carg15783Watermelon (97103) v2carwmbB0066