Carg15766 (gene) Silver-seed gourd

NameCarg15766
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_055 : 227777 .. 228941 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTGCAAGAGAAAGGCCGAGGCACAGAATGGCAAACACAGGTGCGGGACATAATGATTCACACTTTGTACCAATATATATGCTTTTATATTATACGAAAAAGGAAAGTCTGATGGCTGGGGATGGTGAATAGGGGCAGGTTTTCTGTGATTTCTCAAATGTAATCTGTCTATTTCTATAGTTTTCCCACTAATATATCCTTCTTTTTTTTATTATTAGTTTTCATCATTTAATTTCTTCATAGCATTTTGGGTTTTGTTATGATGATTCTTCAAGGATTTTGTTCATTTGAAAGAATTCCAAAAATGGGTTGCCTGAGTTGAGTGGCCAAGTGAAGGAAAGCTTCAATTTAGTTAATGAATTGTTATGCCTTTTCAAGTTATTTTCAATGAATTTTGTAGAATTGTAACATATTCTTCTTTTAGTTTAAGAGATAAATAAACAAAATTTTAACTTGAATTTGATCATCGATGATTATTACAGAAAATTGGTCCCTGCAATGTTCTCATATCTTGGCCACTAGCTCTATCTTCTTCACAGATTCTTCTCAATTCTATAAACAGGCAATAGATTTCCGCCAAGAAAGAAAAAAATGGGCACAGAAGTTACAAATTCACAAACTCAAACAAGTCATCGCTACTACAACGGAGAATTAAAGAAGAGATTCTTGATGAAACGATTATGAGTTTTCCAATTTTTACACAACATGATGATGATATTCATATACAAGATGAAAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTGAAGACCATCTCTAATGAATGGGATTCTTCAAACCTCGAGATACTTGTCAATGGAGGCGGACAAGGTGGATTTGGGTACAGCCCCAATGACGCCCTCTCTCTTCTGTCCATTCTTGAAGAACAGAACTGTGGGAATGCTTCTAATCCCATATTTCGAGGCTACATTTGGGCTGGCGTCTGTATTGAGCTTCAAACACACGATTTTCCCTGCATAATCCTGCGCCAATTCCCTAATCACTGGCTCAATCATCTTACACGGTCCACACCACGGCGCCCAAAATTCCACCAGCACCGTCTTTTCACTCTCCACCACCAACTCATTCCAACTCGACTCTGTAACCTCTTTCACTGCAATTTACGAGAAAAACAGAGTCGAATTTCTAAACCCTAG

mRNA sequence

ATGGCCCTGCAAGAGAAAGGCCGAGGCACAGAATGGCAAACACAGATTTCCGCCAAGAAAGAAAAAAATGGGCACAGAAGTTACAAATTCACAAACTCAAACAAGTCATCGCTACTACAACGGAGAATTAAAGAAGAGATTCTTGATGAAACGATTATGAGTTTTCCAATTTTTACACAACATGATGATGATATTCATATACAAGATGAAAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTGAAGACCATCTCTAATGAATGGGATTCTTCAAACCTCGAGATACTTGTCAATGGAGGCGGACAAGGTGGATTTGGGTACAGCCCCAATGACGCCCTCTCTCTTCTGTCCATTCTTGAAGAACAGAACTGTGGGAATGCTTCTAATCCCATATTTCGAGGCTACATTTGGGCTGGCGTCTGTATTGAGCTTCAAACACACGATTTTCCCTGCATAATCCTGCGCCAATTCCCTAATCACTGGCTCAATCATCTTACACGGTCCACACCACGGCGCCCAAAATTCCACCAGCACCGTCTTTTCACTCTCCACCACCAACTCATTCCAACTCGACTCTGTAACCTCTTTCACTGCAATTTACGAGAAAAACAGAGTCGAATTTCTAAACCCTAG

Coding sequence (CDS)

ATGGCCCTGCAAGAGAAAGGCCGAGGCACAGAATGGCAAACACAGATTTCCGCCAAGAAAGAAAAAAATGGGCACAGAAGTTACAAATTCACAAACTCAAACAAGTCATCGCTACTACAACGGAGAATTAAAGAAGAGATTCTTGATGAAACGATTATGAGTTTTCCAATTTTTACACAACATGATGATGATATTCATATACAAGATGAAAAACAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTGAAGACCATCTCTAATGAATGGGATTCTTCAAACCTCGAGATACTTGTCAATGGAGGCGGACAAGGTGGATTTGGGTACAGCCCCAATGACGCCCTCTCTCTTCTGTCCATTCTTGAAGAACAGAACTGTGGGAATGCTTCTAATCCCATATTTCGAGGCTACATTTGGGCTGGCGTCTGTATTGAGCTTCAAACACACGATTTTCCCTGCATAATCCTGCGCCAATTCCCTAATCACTGGCTCAATCATCTTACACGGTCCACACCACGGCGCCCAAAATTCCACCAGCACCGTCTTTTCACTCTCCACCACCAACTCATTCCAACTCGACTCTGTAACCTCTTTCACTGCAATTTACGAGAAAAACAGAGTCGAATTTCTAAACCCTAG

Protein sequence

MALQEKGRGTEWQTQISAKKEKNGHRSYKFTNSNKSSLLQRRIKEEILDETIMSFPIFTQHDDDIHIQDEKQEEEEEEEEDLKTISNEWDSSNLEILVNGGGQGGFGYSPNDALSLLSILEEQNCGNASNPIFRGYIWAGVCIELQTHDFPCIILRQFPNHWLNHLTRSTPRRPKFHQHRLFTLHHQLIPTRLCNLFHCNLREKQSRISKP
BLAST of Carg15766 vs. TrEMBL
Match: tr|T1L890|T1L890_TRIUA (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 0

Query: 98  VNGGGQGGFGYSPNDALSLLSILEEQNCGNASNPIFRGYIWAGVCIELQTHDFPCIILRQ 157
           V+ GGQ       ND L  L++LE+++ G+AS+ I RG++   +C+  QT     + L Q
Sbjct: 4   VDRGGQCSVCDGANDRLLPLTVLEDEDGGDASDAIPRGHLLVLICVHPQTPQPASVGLCQ 63

Query: 158 FPNHWLNHLTRSTPRRPKFHQHRLFTLHHQLIPTRLCNLFHCNLR 203
             +  ++    + P RP+  QH        L+P  L ++ HC  +
Sbjct: 64  VCDDGVHQAAGAAPWRPERDQHHCLAPQDDLVPCLLLHIAHCKCK 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|T1L890|T1L890_TRIUA3.9e-0429.52Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15766-RACarg15766-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31