Carg15619 (gene) Silver-seed gourd

Overview
NameCarg15619
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA (Cytosine-5)-methyltransferase DRM2
LocationCucurbita_argyrosperma_scaffold_059 : 575798 .. 577326 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTTTCCGAATTCTCTAGATCTAGAAAATTTGTGCTGTTCGACGGTCTTGTAGTTTGTGTGCTTCGATTGCTCGTAGAAAATACGAAAGGATTGGATTGGATTGATTTTGCATGTGAGATTTCGAAGTCTTTGAGTGATTTGAATGATCGGATGCTTGTGAAATGGGGCTCGTATCGTACTCGTATTGTTTTTCGGATCTTTTCATTGATTTCCATCGAAAACTGGACGTTTGATCGGTTAGGGCTGGGGAGAGAAGACGAAGAAGTGTTCTTAGGGAGAATAGGGAAAAAAAAGTGTAATAAAAAGAGTTTTTTTTTTGAATTATTATATTAATTTTATTTATTTTTTTATATAATTAACTTAATTAAAAATAATTTATATCAAGGGTATAACTCAAATAGTTGGATGAATTCATGGGTTTAAAAGTATATATTTTTACTTAAAATAAAGCATATTTTCATATATCTTTTTTAATTTATAATTACTTTTTGATGATTTACTCTCTAAAAGTTCTTGGAGGTACTAATATTATTTCAATGTTCGACAATAAAAAACTAAAATTACGACGGTTAGTTTTTGAAAATTAAGCTTATAAACATTACTTTTGCCTATGAGTTTCTTTGTCGGGTTGTGAAAATTAAAAAATTTAAGCCCCATTTGACGACCATTTGGTTTTTGTTTTTGAAAATTAAGTTTAAAACACTACTTTTACGCTCGGTCTAGTTTTGTAAACTAAAAAAGTTTTGTTTTTGGAATTTGACTAAGAATTAACATAGAAATCATGATGCAAAAATTGTAGGAAAGCGAGCATAATTTTCAAAAACTAAAACGAAAAAAAATGGGTTATCAAATGGGGTCATAGTTTTTAAAAACGCGTTTTTGTTTTAAGAATTTTACTAACAATTTAAACCGTTACGAAAACCGTCGTAGAAAATTGCGAGAAAGCAAACATAAATTTCAAAGAGAGAAAACTAAAACCGAGGCCTCATTTTGATAATCATTTGGTTTTTGGACATTGGAACATTGGAGTTGTTTCTCATCAATTCTCTACAATGAGTTCATCGTTCTTAACAACGCGTTTTTCGACGTCCTATTCATTTGATGCCCGTATCTCTTGCCTATTTTTTGTTGTGTTAGTTTGCAGCTTAAAGGCTCATCTACCACCAAATCATTTCTACCAGAATATAAGAATGGTACGTTGTCTCAACTTTGTCGAAGAAGTTTAGATGTATTACATACTCGAAACACAGTGTGGGAGACGTGGCTTGTACGAGTATATATACGCAGTTATATTTATTTTTGGCTGTTTGGTTTACTTTGTCCGTTATTTTGTCGATGTGTAGGCTGGTGACGATTGCGGTGTTGAAGTTGATAAGATTGACTGGGACACTGAAGATGAGCTTGAAATTGAGAGTATACCTTTAGCCTCTCATGCGAGTTTGACATTTCCTAGTGTTGAGGCAAATATGGTATGTCATGTCTACATTTGTAGTGAAGCTTGTGTGTGGTGCGTCTTTCCGTGA

mRNA sequence

ATGTTCGTTTCCGAATTCTCTAGATCTAGAAAATTTGTGCTGTTCGACGGTCTTGTAGTTTGTGTGCTTCGATTGCTCGTAGAAAATACGAAAGGATTGGATTGGATTGATTTTGCATGTGAGATTTCGAAGTCTTTGAGTGATTTGAATGATCGGATGCTTGTGAAATGGGGCTCGTATCGTACTCGTATTGTTTTTCGGATCTTTTCATTGATTTCCATCGAAAACTGGACGTTTGATCGCTTAAAGGCTCATCTACCACCAAATCATTTCTACCAGAATATAAGAATGGCTGGTGACGATTGCGGTGTTGAAGTTGATAAGATTGACTGGGACACTGAAGATGAGCTTGAAATTGAGAGTATACCTTTAGCCTCTCATGCGAGTTTGACATTTCCTAGTGTTGAGGCAAATATGGTATGTCATGTCTACATTTGTAGTGAAGCTTGTGTGTGGTGCGTCTTTCCGTGA

Coding sequence (CDS)

ATGTTCGTTTCCGAATTCTCTAGATCTAGAAAATTTGTGCTGTTCGACGGTCTTGTAGTTTGTGTGCTTCGATTGCTCGTAGAAAATACGAAAGGATTGGATTGGATTGATTTTGCATGTGAGATTTCGAAGTCTTTGAGTGATTTGAATGATCGGATGCTTGTGAAATGGGGCTCGTATCGTACTCGTATTGTTTTTCGGATCTTTTCATTGATTTCCATCGAAAACTGGACGTTTGATCGCTTAAAGGCTCATCTACCACCAAATCATTTCTACCAGAATATAAGAATGGCTGGTGACGATTGCGGTGTTGAAGTTGATAAGATTGACTGGGACACTGAAGATGAGCTTGAAATTGAGAGTATACCTTTAGCCTCTCATGCGAGTTTGACATTTCCTAGTGTTGAGGCAAATATGGTATGTCATGTCTACATTTGTAGTGAAGCTTGTGTGTGGTGCGTCTTTCCGTGA

Protein sequence

MFVSEFSRSRKFVLFDGLVVCVLRLLVENTKGLDWIDFACEISKSLSDLNDRMLVKWGSYRTRIVFRIFSLISIENWTFDRLKAHLPPNHFYQNIRMAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANMVCHVYICSEACVWCVFP
Homology
[Close]
BLAST of Carg15619 vs. NCBI nr
Match: XP_022928195.1 (DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Cucurbita moschata] >XP_022928196.1 DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 97  MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 140
           MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM
Sbjct: 1   MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 43

[Close]
BLAST of Carg15619 vs. NCBI nr
Match: XP_023530858.1 (DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 97  MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 140
           MAGDDCGVEVD IDWDTEDELEIESIPLASHASLTFPSVEANM
Sbjct: 1   MAGDDCGVEVDNIDWDTEDELEIESIPLASHASLTFPSVEANM 43

[Close]
BLAST of Carg15619 vs. NCBI nr
Match: XP_023530861.1 (DNA (cytosine-5)-methyltransferase DRM2-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 97  MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 140
           MAGDDCGVEVD IDWDTEDELEIESIPLASHASLTFPSVEANM
Sbjct: 1   MAGDDCGVEVDNIDWDTEDELEIESIPLASHASLTFPSVEANM 43

[Close]
BLAST of Carg15619 vs. NCBI nr
Match: XP_022989083.1 (DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Cucurbita maxima] >XP_022989084.1 DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 4.6e-14
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 97  MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 140
           MAGD+CGVEVD IDWDTEDELEIESIPLASHASLTFPSVEANM
Sbjct: 1   MAGDNCGVEVDNIDWDTEDELEIESIPLASHASLTFPSVEANM 43

[Close]
BLAST of Carg15619 vs. NCBI nr
Match: KGN59686.1 (hypothetical protein Csa_3G838650 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 80  DRLKAHLPPNHFYQNIRMAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 139
           + +  HL   +F+  + +AGDD GVEVD IDWDTEDELEIE+IPL SHASL FP VEANM
Sbjct: 12  EEIDKHLEQRNFFITL-LAGDDFGVEVDNIDWDTEDELEIENIPLGSHASLAFPGVEANM 70

[Close]
BLAST of Carg15619 vs. TrEMBL
Match: tr|A0A0A0LI02|A0A0A0LI02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838650 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 80  DRLKAHLPPNHFYQNIRMAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 139
           + +  HL   +F+  + +AGDD GVEVD IDWDTEDELEIE+IPL SHASL FP VEANM
Sbjct: 12  EEIDKHLEQRNFFITL-LAGDDFGVEVDNIDWDTEDELEIENIPLGSHASLAFPGVEANM 70

[Close]
BLAST of Carg15619 vs. TrEMBL
Match: tr|A0A1S3B930|A0A1S3B930_CUCME (DNA (Cytosine-5)-methyltransferase DRM2 OS=Cucumis melo OX=3656 GN=LOC103487106 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 97  MAGDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEANM 140
           MAGD+ GVEVD IDWDTEDELEIE+IP+ SHASL FP VEANM
Sbjct: 1   MAGDNFGVEVDNIDWDTEDELEIENIPMGSHASLAFPGVEANM 43

[Close]
BLAST of Carg15619 vs. TrEMBL
Match: tr|A0A2R6RYY7|A0A2R6RYY7_ACTCH (DNA (Cytosine-5)-methyltransferase (Fragment) OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc02430 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 99  GDDCGVEVDKIDWDTEDELEIESIPLASHASLTFPSVEA 138
           GD  G E DKIDWDT+DELEI++ PL+SH+SL+ P  EA
Sbjct: 2   GDASGEEDDKIDWDTDDELEIQNFPLSSHSSLSNPGGEA 40

The following BLAST results are available for this feature:
BLAST of Carg15619 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928195.13.2e-15100.00DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Cucurbita moschata] >XP... [more]
XP_023530858.11.2e-1497.67DNA (cytosine-5)-methyltransferase DRM2-like isoform X1 [Cucurbita pepo subsp. p... [more]
XP_023530861.11.2e-1497.67DNA (cytosine-5)-methyltransferase DRM2-like isoform X3 [Cucurbita pepo subsp. p... [more]
XP_022989083.14.6e-1495.35DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Cucurbita maxima] >XP_022989... [more]
KGN59686.11.5e-1265.00hypothetical protein Csa_3G838650 [Cucumis sativus][more]
BLAST of Carg15619 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg15619 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15619 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LI02|A0A0A0LI02_CUCSA9.8e-1365.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838650 PE=4 SV=1[more]
tr|A0A1S3B930|A0A1S3B930_CUCME7.0e-1181.40DNA (Cytosine-5)-methyltransferase DRM2 OS=Cucumis melo OX=3656 GN=LOC103487106 ... [more]
tr|A0A2R6RYY7|A0A2R6RYY7_ACTCH2.2e-0464.10DNA (Cytosine-5)-methyltransferase (Fragment) OS=Actinidia chinensis var. chinen... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15619-RACarg15619-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15619CmoCh11G016770Cucurbita moschata (Rifu)carcmoB0502
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15619Silver-seed gourdcarcarB298
Carg15619Silver-seed gourdcarcarB397
Carg15619Silver-seed gourdcarcarB398
Carg15619Cucumber (Gy14) v2carcgybB0376
Carg15619Cucumber (Gy14) v2carcgybB0378
Carg15619Cucumber (Gy14) v1carcgyB0428
Carg15619Cucumber (Gy14) v1carcgyB0429
Carg15619Cucurbita maxima (Rimu)carcmaB0518
Carg15619Cucurbita maxima (Rimu)carcmaB0519
Carg15619Cucurbita maxima (Rimu)carcmaB0520
Carg15619Cucurbita maxima (Rimu)carcmaB0521
Carg15619Cucurbita maxima (Rimu)carcmaB0522
Carg15619Cucurbita maxima (Rimu)carcmaB0523
Carg15619Cucurbita moschata (Rifu)carcmoB0503
Carg15619Cucurbita moschata (Rifu)carcmoB0504
Carg15619Cucurbita moschata (Rifu)carcmoB0505
Carg15619Cucurbita moschata (Rifu)carcmoB0506
Carg15619Cucurbita pepo (Zucchini)carcpeB0520
Carg15619Cucurbita pepo (Zucchini)carcpeB0515
Carg15619Cucurbita pepo (Zucchini)carcpeB0516
Carg15619Cucurbita pepo (Zucchini)carcpeB0517
Carg15619Cucurbita pepo (Zucchini)carcpeB0518
Carg15619Cucurbita pepo (Zucchini)carcpeB0519
Carg15619Wild cucumber (PI 183967)carcpiB0401
Carg15619Wild cucumber (PI 183967)carcpiB0403
Carg15619Cucumber (Chinese Long) v2carcuB0396
Carg15619Cucumber (Chinese Long) v2carcuB0398
Carg15619Cucumber (Chinese Long) v3carcucB0400
Carg15619Melon (DHL92) v3.6.1carmedB0377
Carg15619Bottle gourd (USVL1VR-Ls)carlsiB332
Carg15619Melon (DHL92) v3.5.1carmeB0370
Carg15619Melon (DHL92) v3.5.1carmeB0372
Carg15619Watermelon (Charleston Gray)carwcgB0358
Carg15619Watermelon (Charleston Gray)carwcgB0359
Carg15619Watermelon (97103) v1carwmB0357
Carg15619Watermelon (97103) v1carwmB0358
Carg15619Watermelon (97103) v2carwmbB0389
Carg15619Watermelon (97103) v2carwmbB0384
Carg15619Wax gourdcarwgoB0450
Carg15619Wax gourdcarwgoB0451