Carg15469 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15469
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	rho GDP-dissociation inhibitor 1-like
Location	Cucurbita_argyrosperma_scaffold_069 : 317730 .. 318178 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGCATCTATACTTCTGGTGGCCTAAAACTTTCTCTCTTCTTTCTTCATATATTTTACAATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCAGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGATTCTCTATCAAGGAACAACTCGAGAAAGATAAGGTAAGTTCGTAAGATTGAGTTTGATATGACTTTTTAACAATACTTTTGTTGATCCGTCATAGCTTTGGTTTTGTTTGTCTAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGTGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAA

mRNA sequence

AAAAGCATCTATACTTCTGGTGGCCTAAAACTTTCTCTCTTCTTTCTTCATATATTTTACAATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCAGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGATTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGTGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAA

Coding sequence (CDS)

ATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCAGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGATTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGTGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAA

Protein sequence

MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHEFLLCVDAI

Homology

[Close]

BLAST of Carg15469 vs. NCBI nr
Match: XP_022932679.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
          MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIK
Sbjct: 1  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEDDEDDKLKPEGEVDLGPRFSIK 60

Query: 61 EQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          EQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 93

[Close]

BLAST of Carg15469 vs. NCBI nr
Match: XP_023538815.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
          MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 1  MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60

Query: 61 EQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          EQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 EQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 93

[Close]

BLAST of Carg15469 vs. NCBI nr
Match: XP_022972014.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 8.6e-38
Identity = 88/93 (94.62%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60
          MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK
Sbjct: 1  MSAVVGSLSTKNVKFNPQVGEEELGKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIK 60

Query: 61 EQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          EQLEKDKDD SLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 EQLEKDKDDVSLRKWKEQLLGSVDLSAIGESKE 93

[Close]

BLAST of Carg15469 vs. NCBI nr
Match: XP_022145189.1 (rho GDP-dissociation inhibitor 1-like [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29
Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 1  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREG-EEIIEEDEDDKLKPEGEVDLGPRFSI 60
          MSA+VGSLSTK+VKFNP+  +EE+ ++MN+REG EEI+EEDEDDKLKPE E+DLGP+FS+
Sbjct: 1  MSAMVGSLSTKDVKFNPR--DEEIDRTMNEREGEEEIVEEDEDDKLKPEREMDLGPQFSL 60

Query: 61 KEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 KEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 92

[Close]

BLAST of Carg15469 vs. NCBI nr
Match: XP_004152300.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] >KGN53053.1 hypothetical protein Csa_4G012490 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSAVVGSLSTK-NVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEV-DLGPRFS 60
          MS VVGSLSTK NVKFNPQV EE+L  ++ DRE E+IIEEDE++KLK E E+ DLGP FS
Sbjct: 1  MSTVVGSLSTKDNVKFNPQVREEKLGTTIKDREEEKIIEEDEENKLKGEREIMDLGPLFS 60

Query: 61 IKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          +KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 LKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 95

[Close]

BLAST of Carg15469 vs. TAIR10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 50  EVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG 90
           ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG
Sbjct: 61  KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]

BLAST of Carg15469 vs. TAIR10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 51 VDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG 90
          ++LGP  ++KEQLEKDKDDESLR+WKEQLLGSVDL  +G
Sbjct: 45 LELGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVG 83

[Close]

BLAST of Carg15469 vs. TAIR10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 20 GEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQL 79
          GE      ++ +     +   EDD+   + +++LGP  ++KEQLE+DKDDESLR+WKEQL
Sbjct: 14 GETSEKMGLSRKNSGSSLSPTEDDEEDEDKKLELGPMIALKEQLERDKDDESLRRWKEQL 73

Query: 80 LGSVDLSAIG 90
          LG VDL  +G
Sbjct: 74 LGVVDLEDVG 83

[Close]

BLAST of Carg15469 vs. Swiss-Prot
Match: sp|Q9SFC6|GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-10
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 50  EVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG 90
           ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG
Sbjct: 61  KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]

BLAST of Carg15469 vs. TrEMBL
Match: tr|A0A0A0KU57|A0A0A0KU57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012490 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSAVVGSLSTK-NVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEV-DLGPRFS 60
          MS VVGSLSTK NVKFNPQV EE+L  ++ DRE E+IIEEDE++KLK E E+ DLGP FS
Sbjct: 1  MSTVVGSLSTKDNVKFNPQVREEKLGTTIKDREEEKIIEEDEENKLKGEREIMDLGPLFS 60

Query: 61 IKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          +KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 LKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 95

[Close]

BLAST of Carg15469 vs. TrEMBL
Match: tr|A0A1S3BYU4|A0A1S3BYU4_CUCME (rho GDP-dissociation inhibitor 1-like OS=Cucumis melo OX=3656 GN=LOC103494555 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 67/95 (70.53%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MSAVVGSLSTKNVKFNPQVGEEELSK-SMNDREGE-EIIEEDEDDKLKPEGEVDLGPRFS 60
          MS  VGSLSTK+VKFNPQV EEEL + +M DRE E          KLK E E+DLGP FS
Sbjct: 1  MSTAVGSLSTKDVKFNPQVREEELGRMTMIDREEEXXXXXXXXXXKLKGEREMDLGPLFS 60

Query: 61 IKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
          +KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Sbjct: 61 LKEQLEKDKDDESLRKWKEQLLGSVDLSAIGESKE 95

[Close]

BLAST of Carg15469 vs. TrEMBL
Match: tr|A0A2I4HVF9|A0A2I4HVF9_9ROSI (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109021847 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   MSAVVGSLS-TKNVKFNPQVGEEELSKSMNDREGEE--------------------IIEE 60
           MSA VG++S TK+VKFN Q+ EEEL  + N+  G E                     +EE
Sbjct: 1   MSAAVGAMSTTKDVKFNCQMEEEELKNNKNNNVGGEPGKLPHSDDGHADNDINDGDELEE 60

Query: 61  DEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGE 92
           + D ++K E E+DLGP+ S+KEQLEKDKDDESLRKWKEQLLGSVDLS++G E
Sbjct: 61  ENDAQMKSEKELDLGPQVSLKEQLEKDKDDESLRKWKEQLLGSVDLSSVGAE 112

[Close]

BLAST of Carg15469 vs. TrEMBL
Match: tr|A0A2I4HVF2|A0A2I4HVF2_9ROSI (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109021847 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 60/114 (52.63%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MSAVVGSLS-TKNVKFNPQVGEEELSKSMNDREGEE--------------------IIEE 60
           MSA VG++S TK+VKFN Q+ EEEL  + N+  G E                     +EE
Sbjct: 1   MSAAVGAMSTTKDVKFNCQMEEEELKNNKNNNVGGEPGKLPHSDDGHADNDINDGDELEE 60

Query: 61  DEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
           + D ++K E E+DLGP+ S+KEQLEKDKDDESLRKWKEQLLGSVDLS++G   E
Sbjct: 61  ENDAQMKSEKELDLGPQVSLKEQLEKDKDDESLRKWKEQLLGSVDLSSVGETKE 114

[Close]

BLAST of Carg15469 vs. TrEMBL
Match: tr|A0A1S2YGC5|A0A1S2YGC5_CICAR (rho GDP-dissociation inhibitor 1-like OS=Cicer arietinum OX=3827 GN=LOC101502372 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-15
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 1   MSAVVGSLS-TKNVKFNPQVGEEELSKSMNDREGE----------------EIIEEDEDD 60
           MSA VG++S TK+V FN  + EE  +K  N   GE                E IE++ED+
Sbjct: 1   MSAAVGAVSTTKDVTFNVHLEEEHKNKGTNKVGGELDKIPCSDDGVNYDYVEEIEQEEDE 60

Query: 61  KLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE 94
             K   E+DLGP+FS+KEQLEKDKDDESLRKWKEQLLG+VD+SA+G + E
Sbjct: 61  DTKL--ELDLGPQFSLKEQLEKDKDDESLRKWKEQLLGNVDVSAVGEKIE 108

The following BLAST results are available for this feature:

BLAST of Carg15469 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932679.1	1.0e-38	95.70	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata]	[more]
XP_023538815.1	1.3e-38	95.70	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022972014.1	8.6e-38	94.62	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022145189.1	3.3e-29	78.72	rho GDP-dissociation inhibitor 1-like [Momordica charantia]	[more]
XP_004152300.1	3.4e-26	76.84	PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] >KGN53053.1 h...	[more]

BLAST of Carg15469 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07880.1	2.2e-11	75.00	Immunoglobulin E-set superfamily protein	[more]
AT1G12070.1	2.9e-11	74.36	Immunoglobulin E-set superfamily protein	[more]
AT1G62450.1	3.2e-10	45.71	Immunoglobulin E-set superfamily protein	[more]

BLAST of Carg15469 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SFC6\|GDIR_ARATH	4.0e-10	75.00	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]

BLAST of Carg15469 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KU57\|A0A0A0KU57_CUCSA	2.2e-26	76.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012490 PE=4 SV=1	[more]
tr\|A0A1S3BYU4\|A0A1S3BYU4_CUCME	3.7e-21	70.53	rho GDP-dissociation inhibitor 1-like OS=Cucumis melo OX=3656 GN=LOC103494555 PE...	[more]
tr\|A0A2I4HVF9\|A0A2I4HVF9_9ROSI	1.1e-17	53.57	rho GDP-dissociation inhibitor 1-like isoform X1 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A2I4HVF2\|A0A2I4HVF2_9ROSI	2.5e-17	52.63	rho GDP-dissociation inhibitor 1-like isoform X2 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A1S2YGC5\|A0A1S2YGC5_CICAR	6.8e-15	52.73	rho GDP-dissociation inhibitor 1-like OS=Cicer arietinum OX=3827 GN=LOC101502372...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Molecular Function**
Term	Definition
GO:0005094	Rho GDP-dissociation inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR014756	Ig_E-set
IPR000406	Rho_GDI
IPR024792	RhoGDI_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15469-RA	Carg15469-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024792	Rho GDP-dissociation inhibitor domain superfamily	GENE3D	G3DSA:2.70.50.30		coord: 50..99 e-value: 2.4E-9 score: 39.2
IPR000406	Rho protein GDP-dissociation inhibitor	PFAM	PF02115	Rho_GDI	coord: 38..88 e-value: 3.7E-13 score: 49.5
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 20..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR10980:SF30	IMMUNOGLOBULIN E-SET SUPERFAMILY PROTEIN	coord: 20..88
IPR014756	Immunoglobulin E-set	SUPERFAMILY	SSF81296	E set domains	coord: 39..87

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15469	Wax gourd	carwgoB0815
Carg15469	Silver-seed gourd	carcarB142
Carg15469	Cucumber (Gy14) v2	carcgybB0693
Carg15469	Cucumber (Gy14) v1	carcgyB0775
Carg15469	Cucurbita maxima (Rimu)	carcmaB0972
Carg15469	Cucurbita maxima (Rimu)	carcmaB0974
Carg15469	Cucurbita moschata (Rifu)	carcmoB0946
Carg15469	Cucurbita moschata (Rifu)	carcmoB0947
Carg15469	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15469	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15469	Wild cucumber (PI 183967)	carcpiB0730
Carg15469	Cucumber (Chinese Long) v2	carcuB0716
Carg15469	Cucumber (Chinese Long) v3	carcucB0733
Carg15469	Bottle gourd (USVL1VR-Ls)	carlsiB634
Carg15469	Melon (DHL92) v3.5.1	carmeB0694
Carg15469	Melon (DHL92) v3.6.1	carmedB0707
Carg15469	Watermelon (Charleston Gray)	carwcgB0670
Carg15469	Watermelon (97103) v1	carwmB0690
Carg15469	Watermelon (97103) v2	carwmbB0722