Carg15436 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15436
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_069 : 172892 .. 173404 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTGTCGAACTCGCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTGCCAAGTGGCTTCCCTCTCCCCCGACTCGGCAACAGGTCGACTCAGCCCTGCGAGCCGTCAATCGCGAGGACGCGGATCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCGTTGGGCGATGGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATTGCAGGAATCGCGGGAATCGGCGCCGTGACTCGGTCGGGAAAGGACCTGGTTGGGACTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGTACCTTGGCTTGTCAGGATAG

mRNA sequence

ATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTGTCGAACTCGCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTGCCAAGTGGCTTCCCTCTCCCCCGACTCGGCAACAGGTCGACTCAGCCCTGCGAGCCGTCAATCGCGAGGACGCGGATCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCGTTGGGCGATGGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATTGCAGGAATCGCGGGAATCGGCGCCGTGACTCGGTCGGGAAAGGACCTGGTTGGGACTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGTACCTTGGCTTGTCAGGATAG

Coding sequence (CDS)

ATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTGTCGAACTCGCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTGCCAAGTGGCTTCCCTCTCCCCCGACTCGGCAACAGGTCGACTCAGCCCTGCGAGCCGTCAATCGCGAGGACGCGGATCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCGTTGGGCGATGGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATTGCAGGAATCGCGGGAATCGGCGCCGTGACTCGGTCGGGAAAGGACCTGGTTGGGACTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGTACCTTGGCTTGTCAGGATAG

Protein sequence

MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

Homology

[Close]

BLAST of Carg15436 vs. NCBI nr
Match: XP_022932745.1 (uncharacterized protein LOC111439202 [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 3.1e-88
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV
Sbjct: 1   MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV
Sbjct: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
           SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 170

[Close]

BLAST of Carg15436 vs. NCBI nr
Match: XP_023539875.1 (uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 167/170 (98.24%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           RPHPLI+KWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWA+ELFAEAVVKNV
Sbjct: 61  RPHPLISKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAIELFAEAVVKNV 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
           SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTM+AVYALGVATSMYLGLSG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMIAVYALGVATSMYLGLSG 170

[Close]

BLAST of Carg15436 vs. NCBI nr
Match: XP_022972117.1 (uncharacterized protein LOC111470752 [Cucurbita maxima])

HSP 1 Score: 319.3 bits (817), Expect = 7.8e-84
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           RPHPLI+KWLPSPPTR QVDSAL+AVNR DA REDEETLGPIRFK WA+ELFAEAVVKNV
Sbjct: 61  RPHPLISKWLPSPPTRLQVDSALQAVNRGDAGREDEETLGPIRFKHWAIELFAEAVVKNV 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
           SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG+MVAVYALGVATSMYLGLSG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGSMVAVYALGVATSMYLGLSG 170

[Close]

BLAST of Carg15436 vs. NCBI nr
Match: XP_004152139.1 (PREDICTED: uncharacterized protein LOC101220555 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 7.6e-71
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRV+NSL+NS +FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V
Sbjct: 1   MGISASKRVRNSLTNSHEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           +PHPLI  WLPSPPTR QVDSALRAVNR+D+DRED E LG I F RWA+ELFAEAVVKNV
Sbjct: 61  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDRED-EALGLILFNRWAIELFAEAVVKNV 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
            K+VM RVPVGIAGIAGIGAVTRSGKD+VGT+VAVYALGVATS+YL LSG
Sbjct: 121 GKKVMVRVPVGIAGIAGIGAVTRSGKDVVGTVVAVYALGVATSVYLSLSG 169

[Close]

BLAST of Carg15436 vs. NCBI nr
Match: KGN53004.1 (hypothetical protein Csa_4G011030 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 7.6e-71
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRV+NSL+NS +FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V
Sbjct: 34  MGISASKRVRNSLTNSHEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 93

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           +PHPLI  WLPSPPTR QVDSALRAVNR+D+DRED E LG I F RWA+ELFAEAVVKNV
Sbjct: 94  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDRED-EALGLILFNRWAIELFAEAVVKNV 153

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
            K+VM RVPVGIAGIAGIGAVTRSGKD+VGT+VAVYALGVATS+YL LSG
Sbjct: 154 GKKVMVRVPVGIAGIAGIGAVTRSGKDVVGTVVAVYALGVATSVYLSLSG 202

[Close]

BLAST of Carg15436 vs. TAIR10
Match: AT2G43540.1 (unknown protein)

HSP 1 Score: 190.3 bits (482), Expect = 9.9e-49
Identity = 98/169 (57.99%), Postives = 124/169 (73.37%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGIS SKRV   LSNSP+FDSACDS +   L L QHA+AGV PYQL +AA H+HR L+ +
Sbjct: 1   MGISGSKRVTTILSNSPEFDSACDSAYDESLSLAQHAFAGVRPYQLVSAAAHIHRNLSAL 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           R  PLI +WL SPP++ QVDSALR         ++EE LG   FK+WA+E+FAEAVV N 
Sbjct: 61  R-FPLITRWLSSPPSQSQVDSALRVTVSRVTAADEEEILGQEEFKKWAVEVFAEAVVGNA 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLS 170
            K +  R+P+GI GI GIGAVTRSG++L+G  + VYA+GVATS++L L+
Sbjct: 121 RKTIASRIPLGIVGIGGIGAVTRSGQNLIGAAIGVYAIGVATSVFLSLT 168

[Close]

BLAST of Carg15436 vs. TrEMBL
Match: tr|A0A0A0KVZ1|A0A0A0KVZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011030 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.0e-71
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRV+NSL+NS +FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V
Sbjct: 34  MGISASKRVRNSLTNSHEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 93

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           +PHPLI  WLPSPPTR QVDSALRAVNR+D+DRED E LG I F RWA+ELFAEAVVKNV
Sbjct: 94  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDRED-EALGLILFNRWAIELFAEAVVKNV 153

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
            K+VM RVPVGIAGIAGIGAVTRSGKD+VGT+VAVYALGVATS+YL LSG
Sbjct: 154 GKKVMVRVPVGIAGIAGIGAVTRSGKDVVGTVVAVYALGVATSVYLSLSG 202

[Close]

BLAST of Carg15436 vs. TrEMBL
Match: tr|A0A1S3BXX1|A0A1S3BXX1_CUCME (uncharacterized protein LOC103494601 OS=Cucumis melo OX=3656 GN=LOC103494601 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 140/170 (82.35%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MG+SASKRV+NSL+NSP+FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V
Sbjct: 1   MGLSASKRVRNSLTNSPEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120
           +PHPLI  WLPSPPTR QVDSALRAVNR+D+D E  ETLG IRF+RWA+ELFAEAVVKNV
Sbjct: 61  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDCEG-ETLGLIRFQRWAIELFAEAVVKNV 120

Query: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
            K+VM RVP+GIAGIAGIGAVTRSGKD+VG +VAVYALGVATS+YL LSG
Sbjct: 121 GKKVMVRVPMGIAGIAGIGAVTRSGKDVVGAVVAVYALGVATSIYLSLSG 169

[Close]

BLAST of Carg15436 vs. TrEMBL
Match: tr|A0A2I4DIE1|A0A2I4DIE1_9ROSI (uncharacterized protein LOC108980440 OS=Juglans regia OX=51240 GN=LOC108980440 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-62
Identity = 124/175 (70.86%), Postives = 143/175 (81.71%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRVK SLSNSP+FDSACDS +SHC+ LTQHA+ GVF YQL TA+DHLHR L+T+
Sbjct: 1   MGISASKRVKASLSNSPEFDSACDSGYSHCISLTQHAFPGVFSYQLATASDHLHRTLSTL 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAV-----NREDADREDEETLGPIRFKRWAMELFAEA 120
           RPHPLI KW+PSPP++ QVDSALRAV     NRED   + E  LGP RFK WA+ELF +A
Sbjct: 61  RPHPLIMKWVPSPPSQAQVDSALRAVTRRRPNREDLTAQHESLLGPARFKEWAVELFTDA 120

Query: 121 VVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
           VV N  K V+ RVP+GI GIAGIGAVTRSGKDL+GT + VYALG+ATS+YL LSG
Sbjct: 121 VVSNAGKAVLCRVPIGIVGIAGIGAVTRSGKDLIGTAIGVYALGIATSVYLSLSG 175

[Close]

BLAST of Carg15436 vs. TrEMBL
Match: tr|A0A2P4LCC9|A0A2P4LCC9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_45855 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 6.8e-60
Identity = 122/173 (70.52%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRV  SLSNS +FDSACDS ++HCL +TQHA+ GVFPYQL TA+DH+HR L+T+
Sbjct: 1   MGISASKRVGTSLSNSSEFDSACDSAYTHCLTMTQHAFPGVFPYQLATASDHIHRTLSTL 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDAD-REDEET--LGPIRFKRWAMELFAEAVV 120
           RPHPLI KW+PSPPTR QVDSA RAV R  +  +EDE T  +G   FK+WA+ELFA AVV
Sbjct: 61  RPHPLIVKWVPSPPTRSQVDSAFRAVTRSSSKAQEDESTVVIGSTPFKKWAVELFANAVV 120

Query: 121 KNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG 171
            N  K +M RVP+GIAGIAGIGAVTRSGKDLVGT + VYALGVATS++L LSG
Sbjct: 121 VNAGKALMCRVPIGIAGIAGIGAVTRSGKDLVGTAIGVYALGVATSVFLSLSG 173

[Close]

BLAST of Carg15436 vs. TrEMBL
Match: tr|A0A2P5FW24|A0A2P5FW24_9ROSA (Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_022880 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-59
Identity = 116/172 (67.44%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60
           MGISASKRVK+SLSNSP+FDSACDSTFSHCL LTQHA+ GVFP+QL  A+DHL+R +T  
Sbjct: 1   MGISASKRVKSSLSNSPEFDSACDSTFSHCLSLTQHAFPGVFPHQLSAASDHLYRTVTAD 60

Query: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNR---EDADREDEETLGPIRFKRWAMELFAEAVV 120
           RPHP++ KW+ SPPTR QVDSALR V R    +A   D++TLGP +F+ WA+ELFA A+V
Sbjct: 61  RPHPIVLKWVSSPPTRSQVDSALRVVTRRRPNEASGSDDQTLGPAQFREWAVELFASAIV 120

Query: 121 KNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLS 170
            + SK V+ RVP+G+AGIAG+G VTRSGKDLVGT + +YALGVAT++YL LS
Sbjct: 121 SSASKAVICRVPIGVAGIAGVGVVTRSGKDLVGTAIGLYALGVATAVYLSLS 172

The following BLAST results are available for this feature:

BLAST of Carg15436 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932745.1	3.1e-88	99.41	uncharacterized protein LOC111439202 [Cucurbita moschata]	[more]
XP_023539875.1	1.2e-87	98.24	uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo]	[more]
XP_022972117.1	7.8e-84	95.29	uncharacterized protein LOC111470752 [Cucurbita maxima]	[more]
XP_004152139.1	7.6e-71	83.53	PREDICTED: uncharacterized protein LOC101220555 [Cucumis sativus]	[more]
KGN53004.1	7.6e-71	83.53	hypothetical protein Csa_4G011030 [Cucumis sativus]	[more]

BLAST of Carg15436 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43540.1	9.9e-49	57.99	unknown protein	[more]

BLAST of Carg15436 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15436 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVZ1\|A0A0A0KVZ1_CUCSA	5.0e-71	83.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011030 PE=4 SV=1	[more]
tr\|A0A1S3BXX1\|A0A1S3BXX1_CUCME	1.1e-70	82.35	uncharacterized protein LOC103494601 OS=Cucumis melo OX=3656 GN=LOC103494601 PE=...	[more]
tr\|A0A2I4DIE1\|A0A2I4DIE1_9ROSI	1.9e-62	70.86	uncharacterized protein LOC108980440 OS=Juglans regia OX=51240 GN=LOC108980440 P...	[more]
tr\|A0A2P4LCC9\|A0A2P4LCC9_QUESU	6.8e-60	70.52	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_45855 PE=4 SV=1	[more]
tr\|A0A2P5FW24\|A0A2P5FW24_9ROSA	1.5e-59	67.44	Transmembrane protein OS=Trema orientalis OX=63057 GN=TorRG33x02_022880 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15436-RA	Carg15436-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36743	FAMILY NOT NAMED	coord: 1..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15436	Cla010903	Watermelon (97103) v1	carwmB0690
Carg15436	Csa4G011030	Cucumber (Chinese Long) v2	carcuB0716
Carg15436	MELO3C017778	Melon (DHL92) v3.5.1	carmeB0694
Carg15436	ClCG07G015090	Watermelon (Charleston Gray)	carwcgB0670
Carg15436	CSPI04G02710	Wild cucumber (PI 183967)	carcpiB0730
Carg15436	Cucsa.095440	Cucumber (Gy14) v1	carcgyB0775
Carg15436	CmoCh06G016900	Cucurbita moschata (Rifu)	carcmoB0947
Carg15436	Lsi07G003520	Bottle gourd (USVL1VR-Ls)	carlsiB635
Carg15436	MELO3C017778.2	Melon (DHL92) v3.6.1	carmedB0707
Carg15436	CsaV3_4G002640	Cucumber (Chinese Long) v3	carcucB0733
Carg15436	Cla97C07G142060	Watermelon (97103) v2	carwmbB0722
Carg15436	Bhi01G002877	Wax gourd	carwgoB0818

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15436	Watermelon (97103) v2	carwmbB0721
Carg15436	Wax gourd	carwgoB0813
Carg15436	Wax gourd	carwgoB0814
Carg15436	Silver-seed gourd	carcarB013
Carg15436	Silver-seed gourd	carcarB142
Carg15436	Cucumber (Gy14) v2	carcgybB0693
Carg15436	Cucumber (Gy14) v1	carcgyB0778
Carg15436	Cucurbita maxima (Rimu)	carcmaB0972
Carg15436	Cucurbita maxima (Rimu)	carcmaB0973
Carg15436	Cucurbita maxima (Rimu)	carcmaB0974
Carg15436	Cucurbita moschata (Rifu)	carcmoB0946
Carg15436	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15436	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15436	Wild cucumber (PI 183967)	carcpiB0731
Carg15436	Cucumber (Chinese Long) v3	carcucB0734
Carg15436	Bottle gourd (USVL1VR-Ls)	carlsiB631
Carg15436	Melon (DHL92) v3.5.1	carmeB0691
Carg15436	Melon (DHL92) v3.6.1	carmedB0704
Carg15436	Watermelon (Charleston Gray)	carwcgB0669
Carg15436	Watermelon (97103) v1	carwmB0693