Carg15354 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15354
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF1685 family protein
Location	Cucurbita_argyrosperma_scaffold_085 : 478136 .. 478549 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGAGAAGGTTCTGAATTTCTACGATTGGGTCTGGTTCCGCCGCCCTAGCTTCCAAAGGGAATCAACTTTTCCATGTTCTTCGAGTTCTGAAGCGAACCCAGATGGTGGAAATGGCGTTAAGGCGTTAGAAGAAGCAATCTCCACGTCTGGTTCTGTTTCACCCAATTCGGTGAAGGGATTTAAGGATGTGGGGTTTGTTTTTTCAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGGATCTCAAGAGCTTATCTATCAGAGGTATGGGAAGTGTTGGCTTTGGATAGAAGAAGAGAAGAAATAAGTCCATTGTTAAACAACTGGAAGCTGCCTTCCATGAGCAGTGAAACTGACATGAAACAAAATCTTAGGTGGTGGGCTCATACTGTTGCTTCCACTGTTAGATAA

mRNA sequence

ATGGAAGCGGAGAAGGTTCTGAATTTCTACGATTGGGTCTGGTTCCGCCGCCCTAGCTTCCAAAGGGAATCAACTTTTCCATGTTCTTCGAGTTCTGAAGCGAACCCAGATGGTGGAAATGGCGTTAAGGCGTTAGAAGAAGCAATCTCCACGTCTGGTTCTGTTTCACCCAATTCGGTGAAGGGATTTAAGGATGTGGGGTTTGTTTTTTCAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGGATCTCAAGAGCTTATCTATCAGAGGTATGGGAAGTGTTGGCTTTGGATAGAAGAAGAGAAGAAATAAGTCCATTGTTAAACAACTGGAAGCTGCCTTCCATGAGCAGTGAAACTGACATGAAACAAAATCTTAGGTGGTGGGCTCATACTGTTGCTTCCACTGTTAGATAA

Coding sequence (CDS)

ATGGAAGCGGAGAAGGTTCTGAATTTCTACGATTGGGTCTGGTTCCGCCGCCCTAGCTTCCAAAGGGAATCAACTTTTCCATGTTCTTCGAGTTCTGAAGCGAACCCAGATGGTGGAAATGGCGTTAAGGCGTTAGAAGAAGCAATCTCCACGTCTGGTTCTGTTTCACCCAATTCGGTGAAGGGATTTAAGGATGTGGGGTTTGTTTTTTCAGAGGAAGAAGAAGAAGAAGAAGAGTCGAGGATCTCAAGAGCTTATCTATCAGAGGTATGGGAAGTGTTGGCTTTGGATAGAAGAAGAGAAGAAATAAGTCCATTGTTAAACAACTGGAAGCTGCCTTCCATGAGCAGTGAAACTGACATGAAACAAAATCTTAGGTGGTGGGCTCATACTGTTGCTTCCACTGTTAGATAA

Protein sequence

MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNSVKGFKDVGFVFSEEEEEEEESRISRAYLSEVWEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVASTVR

Homology

[Close]

BLAST of Carg15354 vs. NCBI nr
Match: KGN49319.1 (hypothetical protein Csa_6G519700 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.6e-32
Identity = 103/217 (47.47%), Postives = 115/217 (53.00%), Query Frame = 0


Query: 1   MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNS- 60
           MEAEKVLN Y+W+WF R  FQ+E TF   S+SE NPD  +G+      IS+S S+SPNS 
Sbjct: 1   MEAEKVLNSYEWIWFHRQIFQQEPTFTILSNSEDNPDEESGL------ISSSASLSPNSV 60

Query: 61  -----------------------------------------------VKGFKDVGFVFSE 120
                                                          VKGFKD+GFVFSE
Sbjct: 61  LSTSNLGSPFSETTNPKTTPFKEASKTKRSRRRKLERKSLSELEFEEVKGFKDLGFVFSE 120

Query: 121 -------------------------------XXXXXXXXRISRAYLSEVWEVLALDRRRE 138
                                          XXXXXXXXR+SR YLSEVWEVLA+DRRRE
Sbjct: 121 EDRNSELASVIPGLNRLGSXXXXXXXXXXXXXXXXXXXXRVSRPYLSEVWEVLAMDRRRE 180

[Close]

BLAST of Carg15354 vs. NCBI nr
Match: XP_008439724.1 (PREDICTED: uncharacterized protein LOC103484438 [Cucumis melo] >ADN34031.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 143.7 bits (361), Expect = 4.7e-31
Identity = 102/218 (46.79%), Postives = 114/218 (52.29%), Query Frame = 0


Query: 1   MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNS- 60
           MEAEKVLN YDWVWF R  FQ+E TF   S+SE +PD   G+      IS+S S+SPNS 
Sbjct: 1   MEAEKVLNSYDWVWFHRQIFQKEPTFTILSNSEDHPDDEEGL------ISSSASLSPNSV 60

Query: 61  -----------------------------------------------VKGFKDVGFVFSE 120
                                                          VKGFKD+GFVF+E
Sbjct: 61  LSSSNLGSPFSETTNPKTXXXXXXXXXXXXXXXXXXXXXXSELEFEEVKGFKDLGFVFTE 120

Query: 121 --------------------------------XXXXXXXXRISRAYLSEVWEVLALDRRR 138
                                           XXXXXXXXR+SR YLSEVWEVLA+DRRR
Sbjct: 121 EDRNSELASVIPGLNRLGSXXXXXXXXXXXXXXXXXXXXXRVSRPYLSEVWEVLAMDRRR 180

[Close]

BLAST of Carg15354 vs. NCBI nr
Match: XP_022142329.1 (uncharacterized protein LOC111012470 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 56/107 (52.34%), Postives = 61/107 (57.01%), Query Frame = 0


Query: 60  VKGFKDVGFVFS-----------------------------EXXXXXXXXRISRAYLSEV 119
           VKGF D+GFVFS                             E        +ISR YLSE 
Sbjct: 11  VKGFGDLGFVFSEEDRNSSLGLVIPGLHRLGNLEELEKEEGEKKILDESSKISRPYLSEA 70

Query: 120 WEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVASTVR 138
           WEVL LDRRREEI PLL NWKLP+  +E DMK+NLRWWAHTVASTVR
Sbjct: 71  WEVLGLDRRREEIKPLLRNWKLPTYRNEADMKENLRWWAHTVASTVR 117

[Close]

BLAST of Carg15354 vs. NCBI nr
Match: KHN06416.1 (hypothetical protein glysoja_010760 [Glycine soja])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 40  NGVKALEEAISTSGSVSPNSVKGFKDVGFVFSEXXXXXXXXRI----------------- 99
           NG +   E+ S S  +    +KGF D+GFVFSE         I                 
Sbjct: 121 NGTRKRRESKSLS-DLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKXXXXXXXX 180

Query: 100 --------SRAYLSEVWEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVAS 138
                    R YLSE WEV   DRR++E +PL+ NWK+P++++ETDMK++LRWWAHTVAS
Sbjct: 181 XXCDEISVPRPYLSEAWEVQECDRRKKE-NPLV-NWKMPAINNETDMKESLRWWAHTVAS 240

[Close]

BLAST of Carg15354 vs. NCBI nr
Match: XP_003524968.1 (uncharacterized protein LOC100792716 [Glycine max] >KRH59004.1 hypothetical protein GLYMA_05G160500 [Glycine max])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 40  NGVKALEEAISTSGSVSPNSVKGFKDVGFVFSEXXXXXXXXRI----------------- 99
           NG +   E+ S S  +    +KGF D+GFVFSE         I                 
Sbjct: 118 NGTRKRRESKSLS-DLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKXXXXXXXX 177

Query: 100 --------SRAYLSEVWEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVAS 138
                    R YLSE WEV   DRR++E +PL+ NWK+P++++ETDMK++LRWWAHTVAS
Sbjct: 178 XXCDEISVPRPYLSEAWEVQECDRRKKE-NPLV-NWKMPAINNETDMKESLRWWAHTVAS 237

[Close]

BLAST of Carg15354 vs. TAIR10
Match: AT2G42760.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 60  VKGFKDVGFVFSE---------------------------------XXXXXXXXRISRAY 119
           +KGF D+GFVFSE                                 XXXXXXX R +R Y
Sbjct: 155 LKGFMDLGFVFSEDDHKDSDLVSILPGLQRLVKXXXXXXXXXXXXXXXXXXXXNRAARPY 214

Query: 120 LSEVWEVLALDRRREEISPLLNNWKL--PSMSSETDMKQNLRWWAHTVASTVR 138
           LSE W+     + +++I+P +  W++  P+ +SE D+K NLR WAH VAST+R
Sbjct: 215 LSEAWDHCGGRKGKKQITPEI-KWRVPAPAAASEVDLKDNLRLWAHAVASTIR 266

[Close]

BLAST of Carg15354 vs. TrEMBL
Match: tr|A0A0A0KKE7|A0A0A0KKE7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519700 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.3e-32
Identity = 103/217 (47.47%), Postives = 115/217 (53.00%), Query Frame = 0


Query: 1   MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNS- 60
           MEAEKVLN Y+W+WF R  FQ+E TF   S+SE NPD  +G+      IS+S S+SPNS 
Sbjct: 1   MEAEKVLNSYEWIWFHRQIFQQEPTFTILSNSEDNPDEESGL------ISSSASLSPNSV 60

Query: 61  -----------------------------------------------VKGFKDVGFVFSE 120
                                                          VKGFKD+GFVFSE
Sbjct: 61  LSTSNLGSPFSETTNPKTTPFKEASKTKRSRRRKLERKSLSELEFEEVKGFKDLGFVFSE 120

Query: 121 -------------------------------XXXXXXXXRISRAYLSEVWEVLALDRRRE 138
                                          XXXXXXXXR+SR YLSEVWEVLA+DRRRE
Sbjct: 121 EDRNSELASVIPGLNRLGSXXXXXXXXXXXXXXXXXXXXRVSRPYLSEVWEVLAMDRRRE 180

[Close]

BLAST of Carg15354 vs. TrEMBL
Match: tr|A0A1S3AZ11|A0A1S3AZ11_CUCME (uncharacterized protein LOC103484438 OS=Cucumis melo OX=3656 GN=LOC103484438 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31
Identity = 102/218 (46.79%), Postives = 114/218 (52.29%), Query Frame = 0


Query: 1   MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNS- 60
           MEAEKVLN YDWVWF R  FQ+E TF   S+SE +PD   G+      IS+S S+SPNS 
Sbjct: 1   MEAEKVLNSYDWVWFHRQIFQKEPTFTILSNSEDHPDDEEGL------ISSSASLSPNSV 60

Query: 61  -----------------------------------------------VKGFKDVGFVFSE 120
                                                          VKGFKD+GFVF+E
Sbjct: 61  LSSSNLGSPFSETTNPKTXXXXXXXXXXXXXXXXXXXXXXSELEFEEVKGFKDLGFVFTE 120

Query: 121 --------------------------------XXXXXXXXRISRAYLSEVWEVLALDRRR 138
                                           XXXXXXXXR+SR YLSEVWEVLA+DRRR
Sbjct: 121 EDRNSELASVIPGLNRLGSXXXXXXXXXXXXXXXXXXXXXRVSRPYLSEVWEVLAMDRRR 180

[Close]

BLAST of Carg15354 vs. TrEMBL
Match: tr|E5GC32|E5GC32_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31
Identity = 102/218 (46.79%), Postives = 114/218 (52.29%), Query Frame = 0


Query: 1   MEAEKVLNFYDWVWFRRPSFQRESTFPCSSSSEANPDGGNGVKALEEAISTSGSVSPNS- 60
           MEAEKVLN YDWVWF R  FQ+E TF   S+SE +PD   G+      IS+S S+SPNS 
Sbjct: 1   MEAEKVLNSYDWVWFHRQIFQKEPTFTILSNSEDHPDDEEGL------ISSSASLSPNSV 60

Query: 61  -----------------------------------------------VKGFKDVGFVFSE 120
                                                          VKGFKD+GFVF+E
Sbjct: 61  LSSSNLGSPFSETTNPKTXXXXXXXXXXXXXXXXXXXXXXSELEFEEVKGFKDLGFVFTE 120

Query: 121 --------------------------------XXXXXXXXRISRAYLSEVWEVLALDRRR 138
                                           XXXXXXXXR+SR YLSEVWEVLA+DRRR
Sbjct: 121 EDRNSELASVIPGLNRLGSXXXXXXXXXXXXXXXXXXXXXRVSRPYLSEVWEVLAMDRRR 180

[Close]

BLAST of Carg15354 vs. TrEMBL
Match: tr|I1K414|I1K414_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100792716 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 52/123 (42.28%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 40  NGVKALEEAISTSGSVSPNSVKGFKDVGFVFSEXXXXXXXXRI----------------- 99
           NG +   E+ S S  +    +KGF D+GFVFSE         I                 
Sbjct: 118 NGTRKRRESKSLS-DLEFEELKGFMDLGFVFSEEDKDSSLASIIPGLQRLGKXXXXXXXX 177

Query: 100 --------SRAYLSEVWEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVAS 138
                    R YLSE WEV   DRR++E +PL+ NWK+P++++ETDMK++LRWWAHTVAS
Sbjct: 178 XXCDEISVPRPYLSEAWEVQECDRRKKE-NPLV-NWKMPAINNETDMKESLRWWAHTVAS 237

[Close]

BLAST of Carg15354 vs. TrEMBL
Match: tr|A0A067JBE5|A0A067JBE5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21597 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 41  GVKALEEAISTSGSVSPNSVKGFKDVGFVFSEXXXXXXXXRI------------------ 100
           G K L +++S    +    VKGF D+GFVFSE         I                  
Sbjct: 121 GKKILSKSLS---ELEFEEVKGFMDLGFVFSEEDKDSSLVSIIPGLQRLGKKDGEEDSSG 180

Query: 101 -------SRAYLSEVWEVLALDRRREEISPLLNNWKLPSMSSETDMKQNLRWWAHTVAST 138
                  SR YLSE WE L LDR+R+E  PL+ NW++P++ +E DMK NL+WWAHTVAST
Sbjct: 181 GDKAAIVSRPYLSEAWERLELDRKRKE-DPLM-NWRIPAVGNEIDMKDNLKWWAHTVAST 237

The following BLAST results are available for this feature:

BLAST of Carg15354 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49319.1	9.6e-32	47.47	hypothetical protein Csa_6G519700 [Cucumis sativus]	[more]
XP_008439724.1	4.7e-31	46.79	PREDICTED: uncharacterized protein LOC103484438 [Cucumis melo] >ADN34031.1 hypot...	[more]
XP_022142329.1	7.1e-19	52.34	uncharacterized protein LOC111012470 [Momordica charantia]	[more]
KHN06416.1	2.6e-13	42.28	hypothetical protein glysoja_010760 [Glycine soja]	[more]
XP_003524968.1	2.6e-13	42.28	uncharacterized protein LOC100792716 [Glycine max] >KRH59004.1 hypothetical prot...	[more]

BLAST of Carg15354 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42760.1	5.3e-08	38.05	unknown protein	[more]

BLAST of Carg15354 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15354 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKE7\|A0A0A0KKE7_CUCSA	6.3e-32	47.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519700 PE=4 SV=1	[more]
tr\|A0A1S3AZ11\|A0A1S3AZ11_CUCME	3.1e-31	46.79	uncharacterized protein LOC103484438 OS=Cucumis melo OX=3656 GN=LOC103484438 PE=...	[more]
tr\|E5GC32\|E5GC32_CUCME	3.1e-31	46.79	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|I1K414\|I1K414_SOYBN	1.7e-13	42.28	Uncharacterized protein OS=Glycine max OX=3847 GN=100792716 PE=4 SV=1	[more]
tr\|A0A067JBE5\|A0A067JBE5_JATCU	2.3e-13	42.62	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21597 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15354-RA	Carg15354-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31865:SF7	SUBFAMILY NOT NAMED	coord: 1..51
None	No IPR available	PANTHER	PTHR31865:SF7	SUBFAMILY NOT NAMED	coord: 76..137
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 1..51
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 76..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15354	Cla019647	Watermelon (97103) v1	carwmB0544
Carg15354	Cla009705	Watermelon (97103) v1	carwmB0545
Carg15354	Csa6G519700	Cucumber (Chinese Long) v2	carcuB0578
Carg15354	Csa1G470240	Cucumber (Chinese Long) v2	carcuB0576
Carg15354	MELO3C007202	Melon (DHL92) v3.5.1	carmeB0554
Carg15354	MELO3C002674	Melon (DHL92) v3.5.1	carmeB0551
Carg15354	ClCG03G007480	Watermelon (Charleston Gray)	carwcgB0532
Carg15354	ClCG01G023860	Watermelon (Charleston Gray)	carwcgB0531
Carg15354	CSPI01G21900	Wild cucumber (PI 183967)	carcpiB0582
Carg15354	CSPI06G35510	Wild cucumber (PI 183967)	carcpiB0584
Carg15354	Cucsa.047080	Cucumber (Gy14) v1	carcgyB0623
Carg15354	Cucsa.212880	Cucumber (Gy14) v1	carcgyB0626
Carg15354	CmaCh03G013310	Cucurbita maxima (Rimu)	carcmaB0763
Carg15354	CmaCh18G004280	Cucurbita maxima (Rimu)	carcmaB0762
Carg15354	CmaCh13G005860	Cucurbita maxima (Rimu)	carcmaB0761
Carg15354	CmoCh13G006150	Cucurbita moschata (Rifu)	carcmoB0739
Carg15354	CmoCh18G004060	Cucurbita moschata (Rifu)	carcmoB0741
Carg15354	Lsi02G008280	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15354	Lsi01G002290	Bottle gourd (USVL1VR-Ls)	carlsiB496
Carg15354	Cp4.1LG09g07850	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15354	Cp4.1LG20g04730	Cucurbita pepo (Zucchini)	carcpeB0775
Carg15354	Cp4.1LG10g05710	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15354	CsGy1G021600	Cucumber (Gy14) v2	carcgybB0552
Carg15354	CsGy6G035000	Cucumber (Gy14) v2	carcgybB0554
Carg15354	MELO3C007202.2	Melon (DHL92) v3.6.1	carmedB0560
Carg15354	MELO3C002674.2	Melon (DHL92) v3.6.1	carmedB0557
Carg15354	CsaV3_1G033120	Cucumber (Chinese Long) v3	carcucB0583
Carg15354	Cla97C01G023820	Watermelon (97103) v2	carwmbB0571
Carg15354	Bhi07G000182	Wax gourd	carwgoB0660

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15354	Carg14569	Silver-seed gourd	carcarB174
Carg15354	Carg19894	Silver-seed gourd	carcarB508

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15354	Watermelon (97103) v2	carwmbB0573
Carg15354	Wax gourd	carwgoB0659
Carg15354	Silver-seed gourd	carcarB510
Carg15354	Cucurbita maxima (Rimu)	carcmaB0766
Carg15354	Cucurbita moschata (Rifu)	carcmoB0742
Carg15354	Cucurbita moschata (Rifu)	carcmoB0745
Carg15354	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15354	Cucumber (Chinese Long) v3	carcucB0585