Carg15306 (gene) Silver-seed gourd

Overview
NameCarg15306
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionF-box domain-containing protein
LocationCucurbita_argyrosperma_scaffold_085 : 265429 .. 266564 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGAATGTGAAGGGTGACGTGCCCACCCGATTCATCCTTTTTCACTTTCTTCATCCCCTTCCCCTTCAACAAAAGAAACCCTAAAAGCTGAAGAAATCGGAGTAAAATCATTCTATATTCCAATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGTATCCGTCCATCATCTCCCTTTTCTCCTTCCAGTTTTAGTTTCAATCTGGTTTGCACCTTCTGCGATCGTCGATTCTAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAAGTACTAGGATTTTGATGAATGTTGGAGTGTCCTCGGCGTAATGTTGGGGCTAATGTGTCGATTGTTTTTCTTTTCGTGATTTCAGCTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAAAGTATATATCCGACATTGTGATTTAATATGTAATCTAGATTTACGCTGTGCTGATGAAGAAGAAGAAATAATCTAATTTACACGATACAGATTAAAATTCTATAGTCTATATAGTTCTTGCCATTCATCAACTTGTTTCTCATACTCCATTTCCATGTTTATGATTTCTTGGCTGTAAAGAGGAGTAAATATTACTCAATTTTGCGAAACTGGTTTTGAAAAATGAATTTAATATGAATTGAATTACATGAATATCTAAATTCTCATGGCTTTTTTGGTGGAGATCTGAACACCTTAGATGTCTCCTCACTTTGTTCCAGAATTATCCAGAGAAATAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAAATAAAACAAAAGGTGGAGTAAAACTAAAACAAAAGATCGGAGTAAAATTAAAACAAAAGATCGGAGTAAAACAAAAAATCGGATCAGAAATAGTCTGAGAATTATCGAGAGAAATAGTCGAGAATTATTGAGGGAAATAGTTATAATTATGGGTAGAAAATTA

mRNA sequence

ATAAGAATGTGAAGGGTGACGTGCCCACCCGATTCATCCTTTTTCACTTTCTTCATCCCCTTCCCCTTCAACAAAAGAAACCCTAAAAGCTGAAGAAATCGGAGTAAAATCATTCTATATTCCAATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAACTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAAAGTATATATCCGACATTGTGATTTAATATGTAATCTAGATTTACGCTGTGCTGATGAAGAAGAAGAAATAATCTAATTTACACGATACAGATTAAAATTCTATAGTCTATATAGTTCTTGCCATTCATCAACTTGTTTCTCATACTCCATTTCCATGTTTATGATTTCTTGGCTGTAAAGAGGAGTAAATATTACTCAATTTTGCGAAACTGGTTTTGAAAAATGAATTTAATATGAATTGAATTACATGAATATCTAAATTCTCATGGCTTTTTTGGTGGAGATCTGAACACCTTAGATGTCTCCTCACTTTGTTCCAGAATTATCCAGAGAAATAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAGTCTTTAATTAAAAGAAAATTATGGGTTTGTAAATAAAACAAAAGGTGGAGTAAAACTAAAACAAAAGATCGGAGTAAAATTAAAACAAAAGATCGGAGTAAAACAAAAAATCGGATCAGAAATAGTCTGAGAATTATCGAGAGAAATAGTCGAGAATTATTGAGGGAAATAGTTATAATTATGGGTAGAAAATTA

Coding sequence (CDS)

ATGGCGTTGGAGCTTCTCGTCTTGGGCTGCACCGGAGTTGTGATCTTCCTTCATGGAGCCAATTTCTTCTTCCACGCTCTCTGGCAGCATTTCACCGTCCGATCTCTCAGGCATTTCCCTCTGTTTCTGAAGACGTCGCTCTATGGATCTTTCGGCGATTCCACTACCAAATTTGATGATCCACTAAACCTAACTTCTTGGGCGCGATTGGATGATAGAAATTGGAGAAGGCGAGCAGTGGATCATTTATTTGGAGATGAACAGCAGCAGATTGAAGACTAA

Protein sequence

MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLRHFPLFLKTSLYGSFGDSTTKFDDPLNLTSWARLDDRNWRRRAVDHLFGDEQQQIED
Homology
[Close]
BLAST of Carg15306 vs. NCBI nr
Match: PON37879.1 (hypothetical protein PanWU01x14_317000 [Parasponia andersonii])

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-07
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: PON61367.1 (hypothetical protein TorRG33x02_281910 [Trema orientalis])

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-07
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: EOY28176.1 (Uncharacterized protein TCM_029816 [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 8.0e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 1  MMVELFVLGCTGVVVFLHGANFFFHILSQHLAVRSL 36

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: GAY34585.1 (hypothetical protein CUMW_012220 [Citrus unshiu])

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 2  MELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSL 35

[Close]
BLAST of Carg15306 vs. NCBI nr
Match: KHN18952.1 (hypothetical protein glysoja_036131 [Glycine soja])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          +E+LVLGCTGVV+FLHGA+FFFHAL QH  +RSL
Sbjct: 2  MEVLVLGCTGVVVFLHGAHFFFHALTQHIALRSL 35

[Close]
BLAST of Carg15306 vs. TrEMBL
Match: tr|A0A2P5CJZ9|A0A2P5CJZ9_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_281910 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. TrEMBL
Match: tr|A0A2P5AMV0|A0A2P5AMV0_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSLR 38
          +EL +LGCTG+V+FLHGANFFFHAL QH T+RSLR
Sbjct: 2  VELFLLGCTGIVVFLHGANFFFHALTQHLTIRSLR 36

[Close]
BLAST of Carg15306 vs. TrEMBL
Match: tr|A0A061GF62|A0A061GF62_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029816 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.3e-06
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0 

Query: 1  MALELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          M +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 1  MMVELFVLGCTGVVVFLHGANFFFHILSQHLAVRSL 36

[Close]
BLAST of Carg15306 vs. TrEMBL
Match: tr|A0A2H5N4Q1|A0A2H5N4Q1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_012220 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 2  MELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSL 35

[Close]
BLAST of Carg15306 vs. TrEMBL
Match: tr|A0A1S8AC97|A0A1S8AC97_CITLI (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 3  LELLVLGCTGVVIFLHGANFFFHALWQHFTVRSL 37
          +EL VLGCTGVV+FLHGANFFFH L QH  VRSL
Sbjct: 2  MELFVLGCTGVVVFLHGANFFFHVLSQHLAVRSL 35

The following BLAST results are available for this feature:
BLAST of Carg15306 vs. NCBI nr
Match NameE-valueIdentityDescription
PON37879.19.4e-0777.14hypothetical protein PanWU01x14_317000 [Parasponia andersonii][more]
PON61367.19.4e-0777.14hypothetical protein TorRG33x02_281910 [Trema orientalis][more]
EOY28176.18.0e-0677.78Uncharacterized protein TCM_029816 [Theobroma cacao][more]
GAY34585.11.0e-0579.41hypothetical protein CUMW_012220 [Citrus unshiu][more]
KHN18952.11.8e-0576.47hypothetical protein glysoja_036131 [Glycine soja][more]
BLAST of Carg15306 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg15306 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15306 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5CJZ9|A0A2P5CJZ9_9ROSA6.2e-0777.14Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_281910 PE=4 S... [more]
tr|A0A2P5AMV0|A0A2P5AMV0_PARAD6.2e-0777.14Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_317000 PE... [more]
tr|A0A061GF62|A0A061GF62_THECC5.3e-0677.78Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029816 PE=4 SV=1[more]
tr|A0A2H5N4Q1|A0A2H5N4Q1_CITUN6.9e-0679.41Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_012220 PE=4 SV=1[more]
tr|A0A1S8AC97|A0A1S8AC97_CITLI6.9e-0679.41Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15306-RACarg15306-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15306Cla009636Watermelon (97103) v1carwmB0545
Carg15306ClCG01G023190Watermelon (Charleston Gray)carwcgB0531
Carg15306Cucsa.046410Cucumber (Gy14) v1carcgyB0623
Carg15306CmaCh03G012840Cucurbita maxima (Rimu)carcmaB0763
Carg15306CmoCh03G012780Cucurbita moschata (Rifu)carcmoB0742
Carg15306Cla97C01G023080Watermelon (97103) v2carwmbB0571
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15306Wax gourdcarwgoB0657
Carg15306Wax gourdcarwgoB0659
Carg15306Silver-seed gourdcarcarB174
Carg15306Silver-seed gourdcarcarB507
Carg15306Silver-seed gourdcarcarB509
Carg15306Cucumber (Gy14) v2carcgybB0551
Carg15306Cucumber (Gy14) v2carcgybB0554
Carg15306Cucumber (Gy14) v1carcgyB0625
Carg15306Cucurbita maxima (Rimu)carcmaB0761
Carg15306Cucurbita maxima (Rimu)carcmaB0762
Carg15306Cucurbita maxima (Rimu)carcmaB0766
Carg15306Cucurbita moschata (Rifu)carcmoB0739
Carg15306Cucurbita moschata (Rifu)carcmoB0741
Carg15306Cucurbita moschata (Rifu)carcmoB0745
Carg15306Cucurbita pepo (Zucchini)carcpeB0771
Carg15306Cucurbita pepo (Zucchini)carcpeB0772
Carg15306Cucurbita pepo (Zucchini)carcpeB0773
Carg15306Wild cucumber (PI 183967)carcpiB0581
Carg15306Wild cucumber (PI 183967)carcpiB0584
Carg15306Cucumber (Chinese Long) v2carcuB0575
Carg15306Cucumber (Chinese Long) v2carcuB0578
Carg15306Cucumber (Chinese Long) v3carcucB0582
Carg15306Cucumber (Chinese Long) v3carcucB0585
Carg15306Bottle gourd (USVL1VR-Ls)carlsiB496
Carg15306Bottle gourd (USVL1VR-Ls)carlsiB497
Carg15306Melon (DHL92) v3.5.1carmeB0551
Carg15306Melon (DHL92) v3.5.1carmeB0554
Carg15306Melon (DHL92) v3.6.1carmedB0557
Carg15306Melon (DHL92) v3.6.1carmedB0560
Carg15306Watermelon (Charleston Gray)carwcgB0532
Carg15306Watermelon (97103) v1carwmB0544
Carg15306Watermelon (97103) v2carwmbB0573