Carg15181 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15181
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein VAR3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_073 : 205290 .. 208291 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAACCCTTTTCGTTTCCGTCTGGAATCCACGAAGCACAGTGATGTCTGCTCCGAAGTTCATGTATTTCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCACTCCTCTTCCCGAGAAGACTCCCGCCGAAGCTCATATCTTTGATCAAGTGCAGTTCTTCTACAGGACTTGATTCCGCCAGCAGTGGCGGCGCTGATGCTTCTCAATCCTACTCCGGCCTCACTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGACGGTCTGAGGACCAAGGGTTACTTGGTCGAACCTAATGTAGAAGATGCGAACGGAGATGGGAGCGGCGGTGATGTAGCTACGACATCTGTGAATGATTACAACGACATGAATGTGTTGAAGGATGCTTGTCTTAACTTTGCGCGCGAACGCTACGATATTTTCAAGTGAGTTTTGTGTTTAGAGTTTGATGTTTTTTAGAATCGTGTACTGGAAATTAAGCTGATACGGTTGCATCTTCTGGGATTGGATGAAAGTATTCTAGCGACGAATCTCTAGGGTTTTTGGATATAATCTCTAACGCTTGAAATCAACTTGGGGACTTCTTGTCATCTGGAAATGGATGGTTCATACCTGAAGGCCATTGCGTAGTTCAAGTTCAATTGCTCAAATTCATCATTGGAAGTGGACATACCCTGTTTTTTCACAAATTAGAATCCTGCTGATTGTATGTTTTGTTATCTATTCTGCAATTTGTTATGTAATCCGGCCTGTGATTGTTCACACAGCTGATCTCCATATCCCGTTTGAAAGAATTTCATGGCCCTTATAGTTTAAGATTCTGGATTCTCATTCCTTTCTAGAACATCCTTGTTGTTCTAGGGAGGGAAGGGCAGTGTCTATGTTTCACTTGCATTACTTAGTATGGTATTGATTACCGCCCTTGTCTCGTAGGGAAGTACGTTTCTCCGGGCTTGATTAGAATCTGTTGCTTTTTCTTTGTGCAGGTCATTGTCCACAGATGATATTCAAACCCTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAGAGATTGAGGGCTTACGTGCAACTAGACGAAGGGGACGTATGTAGTCTCACTTAATTATCGTGGTCATTTTTTCAAATGATAGAATCACTTGTATCATGGCTTGGTTTACTCGTTTCATTTCGATATATCTACTTTGTACAGGTTTGTAGTACTTGCAATCTTCGAGGCTCCTGTGGTCGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGAGCCAGTTGTTTTGTCTGGAGGGGACAAACCTCCCGGTAGAGAGCATGTCGAAGTCTCTGCGAGAAAATTGCTTTCTGAGCTATTGGAACTGAGTGAAAAACCCATCGATGCATCAGCAGTGAAGCCCGATACGAAATCTACCCGAAGAAAAGAAAAACCATCAAAATTTACAGATGATGCTTTATCTCAAAATGTTGAGATGAAGAGAGGAGATTGGATGTGTACAAAGTAAGTAATATCTGAAGTGTAACTTCATTACTTCTTTGAACTACTCTTCTATTAGCTTGAATTTCTTTGTATCTTTTGGTGGTTGATTATTCAAGAGATGATTAGATGAATAGGTTACTTTAGTAAGAAATCTTGCCATTTAGCCCTCGTCACGTTTCGGATGGAATTAATTTTAGGCTGCTATCCCCATCTGTGGCCTGAAAGAGACCTCGACCTTGACGTGAATGCTTACAACTCTCCATTTCATTGCATCATAGGATGATAGGAAGTTTTGGATCATGTTAAGCATGGATATCGAGTATTTCATCTTACCCTTAAGCTTTACATCTTTGCGTCTGATGGCCTATGGACGAGACCTGAAATCCGCTTCATTTATCTTTTGATATTTCCAACTAATACTTCCTTTTTGCAGATGCAACTTCTTGAATTTTTCGAGAAACAGAAAATGTTTGAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTGCAGATGATATTGAAATGAAGAATGGAGATTGGATCTGTCCAGAGTAAGCACTTGTTCAATCTTGCTCTCAAACAATTCTTTGGTCTTTTGAATATTTGTACTTCTCAGACTAACTTAGTCGTGAGATCCCCACATCGGTTGGAGAGGGGAACGAAACATTCTTCATAAGAGTGTGGAAACCTCTCCCTAGCAAACACGTTTTAAAAGCCTTAAGAGAAAATCTGAAAGGAAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCAGTTCTTATGAGTTCCTTCGCCTAAAACAACTGTTGCACGAGCTCAAAGCAAAGTATCACTACTGGTGTTTAAACTCATACACATTCCATTCCTTTTGTAATAGGTGCAACTTTATGAACTTCTCAAGAAACGTCAATTGCTTAAAGTGCAAAACCGAGAGGCCAAAGAAGATTGATGTCGGCAAAATTGAAATGAAGAAGGGAGATTGGGTCTGTCCGAAGTAAGTTCATTACTTATCATCCTTCTGTCACTCCATCAATCATGATCTGTTCTTGTATTCAGTGAAATTTGTTTCTTGTTTGACAATGCTGTGTTCTCTTCTGGTGCATTCACCTACAGATGTACATTCATGAACTTTGCCAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGCCCGAAAAGGGAAATGAATCCAGGAGAATGGAAATGCCCCTCGTAAGTTTACTCTTGCTCGCACGTTTTACCTAACGTAGAGGATTTGAACCTCCGACTTTAAAGAAAGAACTACGTACCAATAACCGTTGCTCTTCTGTAGATGTGACTTTTTGAATTATAGACCAAACATGGTCTGCCGGCAGTGTGATGGTGAGCGGCCTAAAGGAGGAGCAAGTGAGGAGTACGAGGAGCAGCTATGGGAGTCACCAAGGGGAAGATGATGTCCAAAGCCGA

mRNA sequence

ATGGCAAAAACCCTTTTCGTTTCCGTCTGGAATCCACGAAGCACAGTGATGTCTGCTCCGAAGTTCATGTATTTCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCACTCCTCTTCCCGAGAAGACTCCCGCCGAAGCTCATATCTTTGATCAAGTGCAGTTCTTCTACAGGACTTGATTCCGCCAGCAGTGGCGGCGCTGATGCTTCTCAATCCTACTCCGGCCTCACTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGACGGTCTGAGGACCAAGGGTTACTTGGTCGAACCTAATGTAGAAGATGCGAACGGAGATGGGAGCGGCGGTGATGTAGCTACGACATCTGTGAATGATTACAACGACATGAATGTGTTGAAGGATGCTTGTCTTAACTTTGCGCGCGAACGCTACGATATTTTCAAGTCATTGTCCACAGATGATATTCAAACCCTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAGAGATTGAGGGCTTACGTGCAACTAGACGAAGGGGACGTTTGTAGTACTTGCAATCTTCGAGGCTCCTGTGGTCGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGAGCCAGTTGTTTTGTCTGGAGGGGACAAACCTCCCGGTAGAGAGCATGTCGAAGTCTCTGCGAGAAAATTGCTTTCTGAGCTATTGGAACTGAGTGAAAAACCCATCGATGCATCAGCAGTGAAGCCCGATACGAAATCTACCCGAAGAAAAGAAAAACCATCAAAATTTACAGATGATGCTTTATCTCAAAATGTTGAGATGAAGAGAGGAGATTGGATGTGTACAAAATGCAACTTCTTGAATTTTTCGAGAAACAGAAAATGTTTGAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTGCAGATGATATTGAAATGAAGAATGGAGATTGGATCTGTCCAGAGTGCAACTTTATGAACTTCTCAAGAAACGTCAATTGCTTAAAGTGCAAAACCGAGAGGCCAAAGAAGATTGATGTCGGCAAAATTGAAATGAAGAAGGGAGATTGGGTCTGTCCGAATGAAATTTGTTTCTTGTTTGACAATGCTGTGTTCTCTTCTGGTGCATTCACCTACAGATGTACATTCATGAACTTTGCCAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGCCCGAAAAGGGAAATGAATCCAGGAGAATGGAAATGCCCCTCATGTGACTTTTTGAATTATAGACCAAACATGGTCTGCCGGCAGTGTGATGGTGAGCGGCCTAAAGGAGGAGCAAGTGAGGAGTACGAGGAGCAGCTATGGGAGTCACCAAGGGGAAGATGATGTCCAAAGCCGA

Coding sequence (CDS)

ATGGCAAAAACCCTTTTCGTTTCCGTCTGGAATCCACGAAGCACAGTGATGTCTGCTCCGAAGTTCATGTATTTCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCACTCCTCTTCCCGAGAAGACTCCCGCCGAAGCTCATATCTTTGATCAAGTGCAGTTCTTCTACAGGACTTGATTCCGCCAGCAGTGGCGGCGCTGATGCTTCTCAATCCTACTCCGGCCTCACTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGACGGTCTGAGGACCAAGGGTTACTTGGTCGAACCTAATGTAGAAGATGCGAACGGAGATGGGAGCGGCGGTGATGTAGCTACGACATCTGTGAATGATTACAACGACATGAATGTGTTGAAGGATGCTTGTCTTAACTTTGCGCGCGAACGCTACGATATTTTCAAGTCATTGTCCACAGATGATATTCAAACCCTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAGAGATTGAGGGCTTACGTGCAACTAGACGAAGGGGACGTTTGTAGTACTTGCAATCTTCGAGGCTCCTGTGGTCGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGAGCCAGTTGTTTTGTCTGGAGGGGACAAACCTCCCGGTAGAGAGCATGTCGAAGTCTCTGCGAGAAAATTGCTTTCTGAGCTATTGGAACTGAGTGAAAAACCCATCGATGCATCAGCAGTGAAGCCCGATACGAAATCTACCCGAAGAAAAGAAAAACCATCAAAATTTACAGATGATGCTTTATCTCAAAATGTTGAGATGAAGAGAGGAGATTGGATGTGTACAAAATGCAACTTCTTGAATTTTTCGAGAAACAGAAAATGTTTGAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTGCAGATGATATTGAAATGAAGAATGGAGATTGGATCTGTCCAGAGTGCAACTTTATGAACTTCTCAAGAAACGTCAATTGCTTAAAGTGCAAAACCGAGAGGCCAAAGAAGATTGATGTCGGCAAAATTGAAATGAAGAAGGGAGATTGGGTCTGTCCGAATGAAATTTGTTTCTTGTTTGACAATGCTGTGTTCTCTTCTGGTGCATTCACCTACAGATGTACATTCATGAACTTTGCCAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGCCCGAAAAGGGAAATGAATCCAGGAGAATGGAAATGCCCCTCATGTGACTTTTTGAATTATAGACCAAACATGGTCTGCCGGCAGTGTGATGGTGAGCGGCCTAAAGGAGGAGCAAGTGAGGAGTACGAGGAGCAGCTATGGGAGTCACCAAGGGGAAGATGA

Protein sequence

MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGPKRVRADDIEMKNGDWICPECNFMNFSRNVNCLKCKTERPKKIDVGKIEMKKGDWVCPNEICFLFDNAVFSSGAFTYRCTFMNFASNKKCLRCREHRPKREMNPGEWKCPSCDFLNYRPNMVCRQCDGERPKGGASEEYEEQLWESPRGR

Homology

[Close]

BLAST of Carg15181 vs. NCBI nr
Match: XP_022922092.1 (zinc finger protein VAR3, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 650.6 bits (1677), Expect = 4.1e-183
Identity = 384/471 (81.53%), Postives = 388/471 (82.38%), Query Frame = 0


Query: 1   MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST 60
           MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST
Sbjct: 1   MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST 60

Query: 61  GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT 120
           GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT
Sbjct: 61  GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT 120

Query: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180
           SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV
Sbjct: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180

Query: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE 240
           QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE
Sbjct: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE 240

Query: 241 HVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMC 300
            VEVSARKLLSELL+LSEKPIDASAVKP+TKSTRRKEKPSKFTDDALSQNVEMKRGDWMC
Sbjct: 241 RVEVSARKLLSELLKLSEKPIDASAVKPNTKSTRRKEKPSKFTDDALSQNVEMKRGDWMC 300

Query: 301 TKCNFLNFSRNRKCLKCNEDGPKRVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           TKCNFLNFSRNRKCLKCNEDGPKRVR                   XXXXXXXXXXXXXXX
Sbjct: 301 TKCNFLNFSRNRKCLKCNEDGPKRVR-------------------XXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXEICFLFDNAVFSSGAFTYRCTFMNFASNKKCLRCREHRPK 420
           XXXXXXXXXXXXXXXXXXXX                                        
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 REMNPGEWKCPSXXXXXXXXXXXXXXXXXXXXXXGASEEYEEQLWESPRGR 472
            EMNPGEW+CPS                      GAS+EYEEQLWESPRGR
Sbjct: 421 XEMNPGEWECPS-------PNMVYRKCDGERPKGGASDEYEEQLWESPRGR 445

[Close]

BLAST of Carg15181 vs. NCBI nr
Match: XP_022922093.1 (zinc finger protein VAR3, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 647.5 bits (1669), Expect = 3.5e-182
Identity = 323/326 (99.08%), Postives = 325/326 (99.69%), Query Frame = 0


Query: 1   MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST 60
           MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST
Sbjct: 1   MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST 60

Query: 61  GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT 120
           GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT
Sbjct: 61  GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT 120

Query: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180
           SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV
Sbjct: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180

Query: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE 240
           QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE
Sbjct: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE 240

Query: 241 HVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMC 300
            VEVSARKLLSELL+LSEKPIDASAVKP+TKSTRRKEKPSKFTDDALSQNVEMKRGDWMC
Sbjct: 241 RVEVSARKLLSELLKLSEKPIDASAVKPNTKSTRRKEKPSKFTDDALSQNVEMKRGDWMC 300

Query: 301 TKCNFLNFSRNRKCLKCNEDGPKRVR 327
           TKCNFLNFSRNRKCLKCNEDGPKRVR
Sbjct: 301 TKCNFLNFSRNRKCLKCNEDGPKRVR 326

[Close]

BLAST of Carg15181 vs. NCBI nr
Match: XP_023515386.1 (zinc finger protein VAR3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 638.6 bits (1646), Expect = 1.6e-179
Identity = 319/326 (97.85%), Postives = 319/326 (97.85%), Query Frame = 0


Query: 1   MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSST 60
           MAKTL VSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLIS IKCSSST
Sbjct: 1   MAKTLVVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISFIKCSSST 60

Query: 61  GLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATT 120
           GLDSASSGG DA QSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGS GDVATT
Sbjct: 61  GLDSASSGGVDAPQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSDGDVATT 120

Query: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180
           SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV
Sbjct: 121 SVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYV 180

Query: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRE 240
           QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDV RLLLTYALEPVVLSGGDKPPGRE
Sbjct: 181 QLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVTRLLLTYALEPVVLSGGDKPPGRE 240

Query: 241 HVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMC 300
           HVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTD ALSQNVEMKRGDWMC
Sbjct: 241 HVEVSARKLLSELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDIALSQNVEMKRGDWMC 300

Query: 301 TKCNFLNFSRNRKCLKCNEDGPKRVR 327
           TKCNFLNFSRNRKCLKCNEDGPKRVR
Sbjct: 301 TKCNFLNFSRNRKCLKCNEDGPKRVR 326

[Close]

BLAST of Carg15181 vs. NCBI nr
Match: XP_022988447.1 (zinc finger protein VAR3, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 610.1 bits (1572), Expect = 6.2e-171
Identity = 362/455 (79.56%), Postives = 366/455 (80.44%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLIS IKCSSSTGLDSASSGGADASQSY
Sbjct: 1   MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISFIKCSSSTGLDSASSGGADASQSY 60

Query: 77  SGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACL 136
           SGLTHHPWPEWVSFVDGLRTKGYLVEP VED NGDGSGGD  TTSVNDYNDMNVLKDACL
Sbjct: 61  SGLTHHPWPEWVSFVDGLRTKGYLVEPTVEDGNGDGSGGDATTTSVNDYNDMNVLKDACL 120

Query: 137 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 196
           NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS
Sbjct: 121 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 180

Query: 197 CGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 256
           CGRAYVILKETEATARTVD+ARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL
Sbjct: 181 CGRAYVILKETEATARTVDIARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 240

Query: 257 SEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLK 316
           SEKPIDASAVK DTKSTRRKEKPSKFTDDALSQ+VEMKRGDWMCTKCNFLNFSRNRKCLK
Sbjct: 241 SEKPIDASAVKADTKSTRRKEKPSKFTDDALSQDVEMKRGDWMCTKCNFLNFSRNRKCLK 300

Query: 317 CNEDGPKRVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 376
           CNEDGPKRV                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 CNEDGPKRVH-------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 377 XXXXEICFLFDNAVFSSGAFTYRCTFMNFASNKKCLRCREHRPKREMNPGEWKCPSXXXX 436
           XXXX                                         EMNPGEW+CPS    
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMNPGEWECPS---- 420

Query: 437 XXXXXXXXXXXXXXXXXXGASEEYEEQLWESPRGR 472
                             GAS+EYEEQLWESPRGR
Sbjct: 421 ---RNMVCRKCDGERPKRGASDEYEEQLWESPRGR 429

[Close]

BLAST of Carg15181 vs. NCBI nr
Match: XP_022988446.1 (zinc finger protein VAR3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 607.1 bits (1564), Expect = 5.2e-170
Identity = 301/309 (97.41%), Postives = 303/309 (98.06%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLIS IKCSSSTGLDSASSGGADASQSY
Sbjct: 1   MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISFIKCSSSTGLDSASSGGADASQSY 60

Query: 77  SGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACL 136
           SGLTHHPWPEWVSFVDGLRTKGYLVEP VED NGDGSGGD  TTSVNDYNDMNVLKDACL
Sbjct: 61  SGLTHHPWPEWVSFVDGLRTKGYLVEPTVEDGNGDGSGGDATTTSVNDYNDMNVLKDACL 120

Query: 137 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 196
           NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS
Sbjct: 121 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 180

Query: 197 CGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 256
           CGRAYVILKETEATARTVD+ARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL
Sbjct: 181 CGRAYVILKETEATARTVDIARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 240

Query: 257 SEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLK 316
           SEKPIDASAVK DTKSTRRKEKPSKFTDDALSQ+VEMKRGDWMCTKCNFLNFSRNRKCLK
Sbjct: 241 SEKPIDASAVKADTKSTRRKEKPSKFTDDALSQDVEMKRGDWMCTKCNFLNFSRNRKCLK 300

Query: 317 CNEDGPKRV 326
           CNEDGPKRV
Sbjct: 301 CNEDGPKRV 309

[Close]

BLAST of Carg15181 vs. TAIR10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 236.5 bits (602), Expect = 3.4e-62
Identity = 139/350 (39.71%), Postives = 189/350 (54.00%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           MS+ +    G +I R    +  PL F R   P +    +C SS   D+A++         
Sbjct: 1   MSSSRIFLVGNSIFRPHKPSF-PLSFNRF--PSVSLRFRCFSS---DAAAAVATTVDSDS 60

Query: 77  SGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACL 136
             LT HPWPEW++FVD L+TKGY  +   +D                 Y +M ++KDACL
Sbjct: 61  PSLTPHPWPEWITFVDRLKTKGYFTKDTEDD---------------TVYQEMILVKDACL 120

Query: 137 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 196
           +FAR+RYD+ +SLS+ D+Q LV+ GCPNLFRK VNS+KR+RA+V+L+EGDVC +C+LR S
Sbjct: 121 SFARDRYDVLRSLSSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCDLRSS 180

Query: 197 CGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 256
           C RAYVILK+TEA ARTVDV RLLL  AL+ +V+S G+ PPG+E V  SAR+LL EL+E 
Sbjct: 181 CDRAYVILKDTEADARTVDVMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLELVEF 240

Query: 257 SEKPIDASAVKPDTKS------------------------------------------TR 316
           SEKP+  +  KP +K                                             
Sbjct: 241 SEKPLIPALPKPSSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 317 RKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGPKR 325
                          +  +   DW C KC+F+NF+RN +C +CNE   +R
Sbjct: 301 XXXXXXXXXXXXXXXDRPLYSADWACPKCDFVNFARNERCRECNEVADRR 329

[Close]

BLAST of Carg15181 vs. TAIR10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 176.0 bits (445), Expect = 5.4e-44
Identity = 99/256 (38.67%), Postives = 146/256 (57.03%), Query Frame = 0


Query: 82  HPWPEWVSFVDGLRTKGYLVEPNVEDANG--DGSGGDVATTSVND--------YNDMNVL 141
           HPWPEW+  ++ L  + Y       D +   +  G DV++  + +        + D   +
Sbjct: 147 HPWPEWMELMERLVKQNYFDHRRERDDDDMVNSLGIDVSSVGLGEDENVGVALFQDFRAV 206

Query: 142 KDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTC 201
           ++AC NF ++R+DI +SLS +DIQ LV  GCP   RKVV S K LR  V LDEGDVCS+C
Sbjct: 207 QNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCSSC 266

Query: 202 NLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKP-PGREHVEVSARKLL 261
           +LR SC +A+ +L   E  ART+D+ R+L TY  +P+  +  +K    ++ V+   RKLL
Sbjct: 267 SLRNSCEKAF-LLTNKEDEARTIDLMRILFTYGFDPLNGTVANKSLLKKKSVKSVVRKLL 326

Query: 262 SELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDAL--SQNVEMKRGDWMCTKCNFLNF 321
            E+++LS  PID +   P  K                    +VEMK+GDW+C KC+F+NF
Sbjct: 327 HEIVKLSAVPIDPNLTPPVIKRXXXXXXXXXXXXXRRVGRDDVEMKKGDWLCPKCDFMNF 386

Query: 322 SRNRKCLKCNEDGPKR 325
           ++N  CL+C+   PKR
Sbjct: 387 AKNTICLQCDAKRPKR 401

[Close]

BLAST of Carg15181 vs. TAIR10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 4.6e-43
Identity = 94/245 (38.37%), Postives = 143/245 (58.37%), Query Frame = 0


Query: 82  HPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACLNFARE 141
           HPWPEW+  +  L  KGY  E               +   +    + N ++ ACLNFAR 
Sbjct: 44  HPWPEWLDLMGMLAKKGYFEE---------------SLIPLMSSKESNHIRTACLNFARH 103

Query: 142 RYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAY 201
           R+ + ++LS  DI+ +   GCP+  RKVVNS KRLRAYV +DEG+VC +CNLRG C RAY
Sbjct: 104 RFTLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAY 163

Query: 202 VILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELSEKPI 261
              ++ E  ART+DV RLLLTY L+ +  +  ++    + VE S RKLL E +  S    
Sbjct: 164 AQARDDEG-ARTIDVMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLTDF 223

Query: 262 DASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDG 321
           +++    +T++   + +P+  + D   ++   + GDW CT+C FLNF++N +CL+C+   
Sbjct: 224 ESA----ETETAGDELQPN--SQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFS 266

Query: 322 PKRVR 327
            +R++
Sbjct: 284 EERLK 266

[Close]

BLAST of Carg15181 vs. TAIR10
Match: AT5G17790.1 (zinc finger (Ran-binding) family protein)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-23
Identity = 78/242 (32.23%), Postives = 128/242 (52.89%), Query Frame = 0


Query: 85  PEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKD--ACLNFARER 144
           PEW   +  L   GY         +  GS   + +     + D  +L+   ACL  ARER
Sbjct: 93  PEWTELLQSLSKAGYF--------SDSGSISGLESEFFPGFPD-ELLRPALACLALARER 152

Query: 145 YDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYV 204
            ++ + LS  D++ LV++G P LF+   +S KR+  Y++           L+G  G+   
Sbjct: 153 PELLEMLSRRDVEVLVENGKPFLFKTGPDSLKRMSLYLR---------SGLQG-IGKLMD 212

Query: 205 ILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELSEKPID 264
           + K     A TVD+ RL+L+Y ++ V  S   K   +E +E S R LLS++ ++S +P +
Sbjct: 213 MEK-----ASTVDLMRLILSYVVD-VASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPE 272

Query: 265 ASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGP 324
           ++    DT   +  ++  +    +   NVEMKRGDW+C++C+ +NF+RN KC +C+E  P
Sbjct: 273 SNV--HDTMQNQYSDRDGQGV-RSFQNNVEMKRGDWICSRCSGMNFARNVKCFQCDEARP 306

[Close]

BLAST of Carg15181 vs. TAIR10
Match: AT1G53460.1 (BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2))

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-09
Identity = 46/172 (26.74%), Postives = 84/172 (48.84%), Query Frame = 0


Query: 86  EWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACLNFARERYDI 145
           E VSFV  L  +GYL + N        +G  +   ++++      +K A   F ++  +I
Sbjct: 144 EMVSFVRLLHKEGYLNKANFI------TGEKLDMGNLDEEYARTFVKFAAERFGKDYQEI 203

Query: 146 FKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYVILK 205
            K LS  D++ +V  GCP+L ++ V +AK LR +  + E +VC  C L+  C   +    
Sbjct: 204 AKWLSGSDLKKIVLFGCPSLEKRAVFAAKTLRNFFDIHENNVCEKCVLKEKC--KFPNQS 263

Query: 206 ETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELS 258
             +   + + ++ ++    L P+ L+   K    + V+ S  +LL+E+  LS
Sbjct: 264 VWDGKTKHLHLSVVMKVITLYPLDLT-HPKLQVPQEVQDSVSRLLTEIQNLS 306

[Close]

BLAST of Carg15181 vs. Swiss-Prot
Match: sp|Q8S9K3|VAR3_ARATH (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-22
Identity = 78/242 (32.23%), Postives = 128/242 (52.89%), Query Frame = 0


Query: 85  PEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKD--ACLNFARER 144
           PEW   +  L   GY         +  GS   + +     + D  +L+   ACL  ARER
Sbjct: 93  PEWTELLQSLSKAGYF--------SDSGSISGLESEFFPGFPD-ELLRPALACLALARER 152

Query: 145 YDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYV 204
            ++ + LS  D++ LV++G P LF+   +S KR+  Y++           L+G  G+   
Sbjct: 153 PELLEMLSRRDVEVLVENGKPFLFKTGPDSLKRMSLYLR---------SGLQG-IGKLMD 212

Query: 205 ILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLELSEKPID 264
           + K     A TVD+ RL+L+Y ++ V  S   K   +E +E S R LLS++ ++S +P +
Sbjct: 213 MEK-----ASTVDLMRLILSYVVD-VASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPE 272

Query: 265 ASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGP 324
           ++    DT   +  ++  +    +   NVEMKRGDW+C++C+ +NF+RN KC +C+E  P
Sbjct: 273 SNV--HDTMQNQYSDRDGQGV-RSFQNNVEMKRGDWICSRCSGMNFARNVKCFQCDEARP 306

[Close]

BLAST of Carg15181 vs. TrEMBL
Match: tr|A0A0A0LPQ6|A0A0A0LPQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025120 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 5.7e-141
Identity = 250/310 (80.65%), Postives = 275/310 (88.71%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           M+APKF+Y GTAISRTTSRALSP LFPRRLP K IS +KCSSST LDS  SGGADA Q +
Sbjct: 1   MAAPKFLYMGTAISRTTSRALSPFLFPRRLPSKFISFMKCSSSTVLDSVGSGGADAPQPH 60

Query: 77  SGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACL 136
           S LTHHPWPEWVSFVDGL+TKGYL+EP  EDA GDG+GG+ AT  V DY+DMNVLKDAC+
Sbjct: 61  STLTHHPWPEWVSFVDGLKTKGYLIEPPSEDATGDGTGGEAATPPVIDYSDMNVLKDACV 120

Query: 137 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 196
           +FAR+R+DIFKSLSTDDIQT+VKDGCPNL RK VNSAKRLRAYVQLDEGDVCSTCNLRGS
Sbjct: 121 SFARDRFDIFKSLSTDDIQTIVKDGCPNLLRKAVNSAKRLRAYVQLDEGDVCSTCNLRGS 180

Query: 197 CGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 256
           C RAYVILK+T+ TARTVDVARLLL YAL+P+VLSGGDKP GREHVEVS RKLLS+L EL
Sbjct: 181 CDRAYVILKQTDGTARTVDVARLLLAYALDPLVLSGGDKPSGREHVEVSVRKLLSDLSEL 240

Query: 257 SEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLK 316
           SEKPID +AV+  TK   RKEK SKFT+DA +++VEMKRGDWMCTKCNFLNFSRNR CLK
Sbjct: 241 SEKPIDPAAVREVTKPPTRKEKSSKFTEDASTRDVEMKRGDWMCTKCNFLNFSRNRTCLK 300

Query: 317 CNEDGPKRVR 327
           CNEDGPKRVR
Sbjct: 301 CNEDGPKRVR 310

[Close]

BLAST of Carg15181 vs. TrEMBL
Match: tr|A0A1S3BX61|A0A1S3BX61_CUCME (zinc finger protein VAR3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494186 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.2e-140
Identity = 248/309 (80.26%), Postives = 275/309 (89.00%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           M+APKF++ GTAISRTTS ALSP LFPRRLP KLIS +KCSSST LDS  SGGADA Q +
Sbjct: 1   MAAPKFLHIGTAISRTTSGALSPFLFPRRLPSKLISFMKCSSSTVLDSVGSGGADAPQLH 60

Query: 77  SGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACL 136
           S LTHHPWPEWVSFVDGL+TKGYL+EP  EDA GDG+GGD AT   NDY+DMNVLKDAC+
Sbjct: 61  STLTHHPWPEWVSFVDGLKTKGYLIEPPSEDATGDGTGGDEATPPANDYSDMNVLKDACV 120

Query: 137 NFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 196
           +FAR+RYDIFKSLSTDDIQT+VKDGCPN+ RKVVNSAKRLRAYVQLDEGDVCSTCNLRGS
Sbjct: 121 SFARDRYDIFKSLSTDDIQTIVKDGCPNILRKVVNSAKRLRAYVQLDEGDVCSTCNLRGS 180

Query: 197 CGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLEL 256
           C RAYVILK+T+ TARTVD+AR+LL YAL+PVV+SGGDKP GRE VEVS RKLLSEL EL
Sbjct: 181 CDRAYVILKQTDGTARTVDIARVLLAYALDPVVMSGGDKPSGRERVEVSVRKLLSELSEL 240

Query: 257 SEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLK 316
           SEKPID +AVK   KS +RKEK SKF +DA +Q+VEMKRGDWMCTKCNFLNF+RNR+CLK
Sbjct: 241 SEKPIDPAAVKEVIKSPKRKEKSSKFIEDASTQDVEMKRGDWMCTKCNFLNFARNRRCLK 300

Query: 317 CNEDGPKRV 326
           CNEDGPKRV
Sbjct: 301 CNEDGPKRV 309

[Close]

BLAST of Carg15181 vs. TrEMBL
Match: tr|A0A2N9E233|A0A2N9E233_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS849 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.5e-93
Identity = 186/313 (59.42%), Postives = 223/313 (71.25%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALS--PLLFPRRLP-PKLISLIKCSSSTGLDSASSGGADAS 76
           MSA K ++ GTA+   T   LS  PLLFP+ L  P+ IS           S+++  +D +
Sbjct: 1   MSASKILHLGTALFNQTRIPLSPVPLLFPKSLRLPRYIS-----------SSAAVTSDGT 60

Query: 77  QSYSGLTHHPWPEWVSFVDGLRTKGYLVE-PNVEDANGDGSGGDVATTSVNDYNDMNVLK 136
           ++      HPWPEWV+FVD L+TKGY  E P  E                  YNDM V+K
Sbjct: 61  ETLCSSDPHPWPEWVTFVDRLKTKGYFTESPPAETV----------------YNDMGVVK 120

Query: 137 DACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCN 196
           DACL+FAR+RYD+FKSLS DDIQT+V+ GCPNL+RK VNSAKRLRAY +LDEGDVCSTCN
Sbjct: 121 DACLSFARDRYDVFKSLSIDDIQTVVEIGCPNLYRKAVNSAKRLRAYARLDEGDVCSTCN 180

Query: 197 LRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSE 256
           LRGSC RAYVILKE EA ARTVD+ R+LL YAL+P+VLSGG+KPPGR+ VE SARKL SE
Sbjct: 181 LRGSCDRAYVILKEDEADARTVDIVRILLFYALDPLVLSGGEKPPGRQTVESSARKLFSE 240

Query: 257 LLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNR 316
           L+ELSE P D +  KP  K  ++KE    F DD LSQ++EMKRGDWMC KCNF+NFSRN 
Sbjct: 241 LIELSETPPDPALPKPAGKVLKQKEDTLNFMDDTLSQDIEMKRGDWMCPKCNFMNFSRNV 286

Query: 317 KCLKCNEDGPKRV 326
           +C +CNEDGPKRV
Sbjct: 301 QCRQCNEDGPKRV 286

[Close]

BLAST of Carg15181 vs. TrEMBL
Match: tr|A0A2I4HPE8|A0A2I4HPE8_9ROSI (zinc finger protein VAR3, chloroplastic OS=Juglans regia OX=51240 GN=LOC109020065 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 1.1e-91
Identity = 184/312 (58.97%), Postives = 228/312 (73.08%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSY 76
           MSA KF++FGTA+   TS   SPL     +  K +  ++ SSS  +D  ++G    + + 
Sbjct: 1   MSASKFLHFGTALFLRTSTPPSPL-----VSLKSLRFLRFSSSAAVDPLTNG---TTVTI 60

Query: 77  SGLTH--HPWPEWVSFVDGLRTKGYLVE--PNV-EDANGDGSGGDVATTSVNDYNDMNVL 136
           S   H  HPWPEWV+FVD L+TKGY VE  P   ++A  D   GD  +     Y DMN++
Sbjct: 61  SSPHHQPHPWPEWVTFVDRLKTKGYFVELPPEAKQEAGADVGPGDAKSL----YIDMNLV 120

Query: 137 KDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTC 196
           KDACL+FAR+RYD+FKSLST DIQ +V+ GCPNLFRK VNSAKRLRA+V+LDEG+VCSTC
Sbjct: 121 KDACLSFARDRYDVFKSLSTKDIQMVVEGGCPNLFRKSVNSAKRLRAFVRLDEGEVCSTC 180

Query: 197 NLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLS 256
            LRGSC RAYVILKE EA ARTVD+ R+LL YAL+P+V+SGG+KPPGR+ +E SARKL S
Sbjct: 181 ILRGSCDRAYVILKEDEAAARTVDIVRILLFYALDPLVISGGEKPPGRDTIESSARKLFS 240

Query: 257 ELLELSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRN 316
           EL++LSE   D    +P  K  ++KE+  KF DD LSQ+VEMKRGDWMC KC+FLNFSRN
Sbjct: 241 ELIDLSEASPDPVLPRPAVKGMKQKEESVKFMDDKLSQDVEMKRGDWMCPKCSFLNFSRN 300

Query: 317 RKCLKCNEDGPK 324
            +CLKC EDGPK
Sbjct: 301 IRCLKCQEDGPK 300

[Close]

BLAST of Carg15181 vs. TrEMBL
Match: tr|A0A2P4J4J2|A0A2P4J4J2_QUESU (Zinc finger protein var3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23245 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.2e-91
Identity = 182/309 (58.90%), Postives = 223/309 (72.17%), Query Frame = 0


Query: 17  MSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKL-ISLIKCSSSTGLDSASSGGADASQS 76
           MS  KF++ GTA+S      LSPL  PR LP  L      CS+++   SA+   AD+++S
Sbjct: 1   MSVSKFLHLGTALSLHNRLPLSPL--PRLLPKALQFHPRYCSTAS---SAAVAAADSTES 60

Query: 77  YSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDAC 136
                 HPWPEWV+FVD L++KGY  E                T SV  Y DM V++DAC
Sbjct: 61  LCSPDPHPWPEWVTFVDRLKSKGYFTE------------SSSPTDSV--YKDMGVVRDAC 120

Query: 137 LNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRG 196
           L+FAR+RYD+FKSLS DDIQ +V+ GCPNL+RK VNS KRLRAYV+LDEGDVCSTC+LRG
Sbjct: 121 LSFARDRYDVFKSLSIDDIQKVVECGCPNLYRKAVNSGKRLRAYVRLDEGDVCSTCSLRG 180

Query: 197 SCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGREHVEVSARKLLSELLE 256
           SC RAYVILKETEA ARTVD+ R+LL YAL+ +VLSGG+KPPGR+ +E SARKLLSEL+E
Sbjct: 181 SCDRAYVILKETEADARTVDIVRILLFYALDSLVLSGGEKPPGRQAIESSARKLLSELIE 240

Query: 257 LSEKPIDASAVKPDTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCL 316
           LSE   D +  KP  K+ ++K+    F DD  SQ+VEMKRGDWMC KCNF+NFSRN++C 
Sbjct: 241 LSETSPDPALPKPAVKALKQKDDSLDFMDDVPSQDVEMKRGDWMCPKCNFMNFSRNKQCR 290

Query: 317 KCNEDGPKR 325
           +CNEDGPKR
Sbjct: 301 ECNEDGPKR 290

The following BLAST results are available for this feature:

BLAST of Carg15181 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922092.1	4.1e-183	81.53	zinc finger protein VAR3, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]
XP_022922093.1	3.5e-182	99.08	zinc finger protein VAR3, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_023515386.1	1.6e-179	97.85	zinc finger protein VAR3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022988447.1	6.2e-171	79.56	zinc finger protein VAR3, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022988446.1	5.2e-170	97.41	zinc finger protein VAR3, chloroplastic isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg15181 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48570.1	3.4e-62	39.71	zinc finger (Ran-binding) family protein	[more]
AT1G55040.1	5.4e-44	38.67	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	4.6e-43	38.37	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G17790.1	1.8e-23	32.23	zinc finger (Ran-binding) family protein	[more]
AT1G53460.1	4.3e-09	26.74	BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfa...	[more]

BLAST of Carg15181 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8S9K3\|VAR3_ARATH	3.2e-22	32.23	Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 ...	[more]

BLAST of Carg15181 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPQ6\|A0A0A0LPQ6_CUCSA	5.7e-141	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025120 PE=4 SV=1	[more]
tr\|A0A1S3BX61\|A0A1S3BX61_CUCME	2.2e-140	80.26	zinc finger protein VAR3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494186 ...	[more]
tr\|A0A2N9E233\|A0A2N9E233_FAGSY	1.5e-93	59.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS849 PE=4 SV=1	[more]
tr\|A0A2I4HPE8\|A0A2I4HPE8_9ROSI	1.1e-91	58.97	zinc finger protein VAR3, chloroplastic OS=Juglans regia OX=51240 GN=LOC10902006...	[more]
tr\|A0A2P4J4J2\|A0A2P4J4J2_QUESU	3.2e-91	58.90	Zinc finger protein var3, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_23245...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036443	Znf_RanBP2_sf
IPR001876	Znf_RanBP2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15181-RA	Carg15181-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 335..359 e-value: 4.4E-6 score: 36.2 coord: 296..320 e-value: 9.9E-6 score: 35.0 coord: 374..417 e-value: 0.38 score: 15.2 coord: 426..450 e-value: 0.1 score: 19.7
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 295..317 e-value: 9.0E-4 score: 18.4 coord: 333..361 e-value: 2.4E-8 score: 33.0 coord: 426..452 e-value: 1.0E-4 score: 21.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 298..317
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 428..447
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 337..356
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 333..362 score: 10.342
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 294..323 score: 9.631
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 424..453 score: 9.224
None	No IPR available	GENE3D	G3DSA:4.10.1060.10		coord: 325..364 e-value: 4.7E-11 score: 43.7 coord: 286..324 e-value: 4.7E-10 score: 40.5 coord: 419..455 e-value: 9.7E-7 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..471
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 284..347 coord: 31..276
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 327..469
None	No IPR available	PANTHER	PTHR23111:SF40	SUBFAMILY NOT NAMED	coord: 284..347 coord: 31..276
None	No IPR available	PANTHER	PTHR23111:SF40	SUBFAMILY NOT NAMED	coord: 327..469
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 289..322
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 328..363
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 421..454

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15181	Cla018919	Watermelon (97103) v1	carwmB0789
Carg15181	Csa1G025120	Cucumber (Chinese Long) v2	carcuB0801
Carg15181	MELO3C017362	Melon (DHL92) v3.5.1	carmeB0785
Carg15181	ClCG06G014270	Watermelon (Charleston Gray)	carwcgB0764
Carg15181	CSPI01G04400	Wild cucumber (PI 183967)	carcpiB0821
Carg15181	Cucsa.111610	Cucumber (Gy14) v1	carcgyB0897
Carg15181	CmaCh11G003170	Cucurbita maxima (Rimu)	carcmaB1092
Carg15181	CmaCh10G003320	Cucurbita maxima (Rimu)	carcmaB1091
Carg15181	CmoCh11G003220	Cucurbita moschata (Rifu)	carcmoB1064
Carg15181	CmoCh10G003580	Cucurbita moschata (Rifu)	carcmoB1063
Carg15181	Lsi06G012750	Bottle gourd (USVL1VR-Ls)	carlsiB726
Carg15181	Cp4.1LG18g06680	Cucurbita pepo (Zucchini)	carcpeB1103
Carg15181	Cp4.1LG04g13740	Cucurbita pepo (Zucchini)	carcpeB1106
Carg15181	CsGy1G004300	Cucumber (Gy14) v2	carcgybB0778
Carg15181	MELO3C017362.2	Melon (DHL92) v3.6.1	carmedB0797
Carg15181	CsaV3_1G004400	Cucumber (Chinese Long) v3	carcucB0824
Carg15181	Cla97C06G123730	Watermelon (97103) v2	carwmbB0827
Carg15181	Bhi02G000107	Wax gourd	carwgoB0924

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15181	Carg09097	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15181	Silver-seed gourd	carcarB616
Carg15181	Cucurbita maxima (Rimu)	carcmaB1095