Carg15118 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15118
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	rRNA 2'-O-methyltransferase fibrillarin
Location	Cucurbita_argyrosperma_scaffold_078 : 620544 .. 624256 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCGCAGCCCCTATAAATTTAAAACCCCAAACAACCTTCCTCACTTCGCCCCTGTGTTTGTTCTAAAACCCTAGCGGAAACTAAGCTCCTTCTCTCGCTCTCTCGGTGACTGCAATGAGACCTCCACGAGGTATGTACTAGAAAGAAGCTGAACTTGTGCTCCTTGTTCTTTCTCTTTTCTTGTTTTTGGGTGAAAAAGATCTGCTCTGGCTTCAATGGAGAATGCTGTGTTAACTCAATTTATTGGTTGTCTGCTTGTTCCGATGTTCGAATGAGTTTGACCGTTTCCATTCTTACTACCTACTGAATCTGCTTCCATATGATATCGTTTATCGGTTGTTTGATTGTTGGTTTCCTCTCTTTAGTGTTATTTAGTTCTCATGTACTTTTTTTTCTTTTACGTAAATTATTTGTTTCCTAGCGTCTCTATTACTACGCATCGATCATTAAACTGGGTAAGTTGGATATGTGCAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAAGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGGTGATTCTCGTTTAACAGTAATTTTGTTCCTGAATGTGTGTTAGTTTTCAATATACATTTTATTGAAGTCGATGGATACTATGTTTTTTCTGGATAACTTCGATGATGAGTTTTTGATATTTAATTATACTTGAGAAATTCTAGTTAGTAGTCGTATCTCCCAACAGTTTTGGATGGTTCTGGCACGACAGTCTGTGCTTGTATATGTTTTTATACGTTAACTATTTATGTTAGTCTAATTTAACTTCCGATGTCTGCAAGTTTTGTCAGCATAAAGAACTATTTGTTCCTTCTGTTTGTTATGTGCCTGCAAAGCTAATTGTTTTGTATACAATGCCATTCAGAATGAAGATGGAACAAAAGTTGAATACCGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCGGCCGTTCTTGGTGGTGTTGATGACATTTGGATTGTAAGTGCCTTTCACCTCCAATTTGACGCTGTACCCTTTCAACTCTTTCAACCTTTAGTGTTCTTTTTCTTTGCTCTCTTGCTAAATAGTTTGCTAACACTTGTATTACAGAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGTCCGGTAAGTAGTTATCTAGAGAGACATCTTGTAGTTTTATTCAAGTGATAGAATGCTTAACAAATGTCGGTGTTTTCTTTTTCAGACTGGTATTGTGTATGCCGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGTTCACACTTCTTCTTTTTCTTGCTTGTCTGTCTGTATTATTCTTGTACTTGTGCATCATCAACTAACTGAAAGTTGATCAGCACAGTTCAATAATTACTTTAAAAAGAATCTAACTCCTTTTGTTTTCTTTCCCCCCATATTAACCCTTTTAAATGGTATTTCAATATTCAATATGTATTTATTTTCATCTACCGTTTTCCTCTCTACTGTTTTGTTTTCATCACCATTATTTCATCTATTTAGACTTTAAGCATATGACGACTTTAAGCATGTTTTCATCTCCATTATTTAGCACATGACGAATTTAAGCATGTTTTCATCTCATAATTTAGCATATGACGAATTTCTCGGATTCCCCTTCAAGACTTCTTGAATGATGCATAACCCGAGTTTCTGATGCTTGAAGAAATGCTTCCTTTTGAAGTGACTTGATCTTTTCTTTCTAAATTGCACTGTTTGTCTCATACTGCGAACTTTTTTTTTCTATACTCATATTGGTTCTTTTTTTCCTTTTTTCACTGTTTTTCATCCTATTATATTTCAAATATATGGCATCATAACTGTCGAGCTTATTTTTATTGTACCTGAACCCTTTCTAGTTGGTTTCTCTAGTTGTGTTTCTTCAGTTTTCTACTCTTTTGAAATATTTTTATTCCAATATTGACATGTCCATTGCCATTTATACACCATCACGTTTATTATGCTATCCACGCATCACACCTCTTTTTTTTTTTGTTTAGTAGAAGGCCACGATCTTAGCTGGTAACTTAGATTTCAAAAGGCCATGTTTACAATATTGCTCTATTTATGTTTGGATCTAGATTTTAACTATTTGCAAACCATTCTGCTTGATCATTAAGTAAATCAATATATTACTATTCTATACTATTACTGTTTTCCAATAATTACCATTCTATACTATTACTGTTTTCCAATAATTACCATTCTATACTCATCCTTTCTTAATTCCCCCGAAAATCAATATATTACTAGAGCATGTTCTTGTTATGATAATGATCTACTTTGAATTTCCCATAAAAGATGATATACTCTGAATCAGAGGGTGTTTTGTGTTTAGGCCTTACAAGAATTGAAGTAGAAATTAAAAGTAAAAAAAAAAAACAATACAAATCTGCCCTATTTATTTCATCGTTTGTAGTGTGGGATATGGTCTTCTAACTTATTTACCTTGAGCTATTGTACTATCTTTTCATGATGATTTAACCTTTTTTGGTTATCTGTGCTTAGCATGTGATGATTTACTCGGATTCCCCTTCAAGACATCTTGAATGATGCACAACCCGAGTTTCTGATGCGCCCAAGAATAATATCATATTTTGTGTCCTTGACCTATTAACTTCCTTACATTTCAGTTTCTTAACCTTACCTTCTTTAACCTCCCTTCTTCAATACAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGTGAGTGAATTGTTTCTCTATTATTCTTTTAGACAAAAAGACGGCTTAATCCGTGAATGGAAGATGACATATTTCCTATCTAACTTCTGCAGGCAAACTGTATCGACTCAACCGTTCCTGCTGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGTATCTATCGGGCGCCAAAGAAACAGAAGGCTGCAGCTTAAACAGTTCAATGAGCCAAGGTTATGAGTCTTATGGATGATTTATAGGTAGACTGTAGTTTATTATCCGTGTTTCTTATCGTTAGCTTGTAATCGAGATCGAGATGTTTTAAAAAGCCAATACTCTGTGTGTATCTTCGATAATTTTGGTGATTAATCGACAGAACTGCAGGTTGTCTGTTTCATTCCTGTCTGTAAGGAGTATAAGAATGTCTTTAAATTGTAGGATCCATTTTTAATCGGAACCATTCAAAGCGAACTCTAACTTCATGCAATTTGCGTTTCAGGCGTTGATT

mRNA sequence

CGCCGCAGCCCCTATAAATTTAAAACCCCAAACAACCTTCCTCACTTCGCCCCTGTGTTTGTTCTAAAACCCTAGCGGAAACTAAGCTCCTTCTCTCGCTCTCTCGGTGACTGCAATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAAGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACCGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCGGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGTCCGACTGGTATTGTGTATGCCGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGCAAACTGTATCGACTCAACCGTTCCTGCTGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGTATCTATCGGGCGCCAAAGAAACAGAAGGCTGCAGCTTAAACAGTTCAATGAGCCAAGGTTATGAGTCTTATGGATGATTTATAGGTAGACTGTAGTTTATTATCCGTGTTTCTTATCGTTAGCTTGTAATCGAGATCGAGATGTTTTAAAAAGCCAATACTCTGTGTGTATCTTCGATAATTTTGGTGATTAATCGACAGAACTGCAGGTTGTCTGTTTCATTCCTGTCTGTAAGGAGTATAAGAATGTCTTTAAATTGTAGGATCCATTTTTAATCGGAACCATTCAAAGCGAACTCTAACTTCATGCAATTTGCGTTTCAGGCGTTGATT

Coding sequence (CDS)

ATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAAGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACCGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCGGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGTCCGACTGGTATTGTGTATGCCGTTGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGTCATTTTGTTATATCAATCAAGGCAAACTGTATCGACTCAACCGTTCCTGCTGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGTATCTATCGGGCGCCAAAGAAACAGAAGGCTGCAGCTTAA

Protein sequence

MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA

Homology

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BLAST of Carg15118 vs. NCBI nr
Match: XP_022984980.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima])

HSP 1 Score: 477.2 bits (1227), Expect = 4.0e-131
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK
Sbjct: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM
Sbjct: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS
Sbjct: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304

[Close]

BLAST of Carg15118 vs. NCBI nr
Match: XP_022922917.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata])

HSP 1 Score: 476.1 bits (1224), Expect = 8.9e-131
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRI+VQNEDGTKVEYRVWNPFRSK
Sbjct: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIAVQNEDGTKVEYRVWNPFRSK 124

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM
Sbjct: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS
Sbjct: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304

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BLAST of Carg15118 vs. NCBI nr
Match: XP_023552409.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL
Sbjct: 67  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 126

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA
Sbjct: 127 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 186

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI
Sbjct: 187 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 246

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305
           KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 247 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305

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BLAST of Carg15118 vs. NCBI nr
Match: XP_004143621.2 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 36b [Cucumis sativus] >KGN50438.1 hypothetical protein Csa_5G174640 [Cucumis sativus])

HSP 1 Score: 474.6 bits (1220), Expect = 2.6e-130
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           V+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIS+QNEDGTKVEYRVWNPFRSKL
Sbjct: 69  VIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISIQNEDGTKVEYRVWNPFRSKL 128

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA
Sbjct: 129 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 188

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI
Sbjct: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305
           KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 249 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 307

[Close]

BLAST of Carg15118 vs. NCBI nr
Match: XP_004140765.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis sativus] >KGN57402.1 hypothetical protein Csa_3G183360 [Cucumis sativus])

HSP 1 Score: 473.8 bits (1218), Expect = 4.4e-130
Identity = 236/240 (98.33%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKR+SVQNEDGTK+EYRVWNPFRSK
Sbjct: 68  KVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRVSVQNEDGTKIEYRVWNPFRSK 127

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP+GIVYAVEFSHRSGRDLVNM
Sbjct: 128 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNM 187

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS
Sbjct: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 248 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 307

[Close]

BLAST of Carg15118 vs. TAIR10
Match: AT4G25630.1 (fibrillarin 2)

HSP 1 Score: 437.6 bits (1124), Expect = 6.4e-123
Identity = 215/239 (89.96%), Postives = 227/239 (94.98%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK EYRVWNPFRSK
Sbjct: 79  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSK 138

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNM
Sbjct: 139 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 198

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GGHFVIS
Sbjct: 199 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVIS 258

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA 304
           IKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Sbjct: 259 IKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKPKAA 317

[Close]

BLAST of Carg15118 vs. TAIR10
Match: AT5G52470.1 (fibrillarin 1)

HSP 1 Score: 435.3 bits (1118), Expect = 3.2e-122
Identity = 215/240 (89.58%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRVWNPFRSK
Sbjct: 68  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSK 127

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNM
Sbjct: 128 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 187

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GGHFVIS
Sbjct: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVIS 247

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Sbjct: 248 IKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQKTPA 307

[Close]

BLAST of Carg15118 vs. TAIR10
Match: AT5G52490.1 (Fibrillarin family protein)

HSP 1 Score: 337.0 bits (863), Expect = 1.2e-92
Identity = 165/235 (70.21%), Postives = 193/235 (82.13%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KV+V PHRH G+F+AK K DALVTKN+V GE +YNEKRI VQNED + VEYRVWNP RSK
Sbjct: 58  KVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVWNPHRSK 117

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LA A+  GVD+IWIKPG +VLYLGA+SG TVSHVSD+VGP G VYAVE S   G+ L+NM
Sbjct: 118 LADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICGKVLMNM 177

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           A+KRTNVIPIIEDARHPAKYRMLVGMVD+IFSDV  P+QA IL+LNASYFLK+GGHF+IS
Sbjct: 178 AEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMIS 237

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK 300
           IKAN IDST+ AE V+  EV KL+ ++ +PTE + L+  E  HACV G YR P+K
Sbjct: 238 IKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHACVFGGYRLPRK 292

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BLAST of Carg15118 vs. Swiss-Prot
Match: sp|Q94AH9|MD36A_ARATH (Mediator of RNA polymerase II transcription subunit 36a OS=Arabidopsis thaliana OX=3702 GN=MED36A PE=1 SV=2)

HSP 1 Score: 437.6 bits (1124), Expect = 1.2e-121
Identity = 215/239 (89.96%), Postives = 227/239 (94.98%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTK EYRVWNPFRSK
Sbjct: 79  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSK 138

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNM
Sbjct: 139 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 198

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GGHFVIS
Sbjct: 199 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVIS 258

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA 304
           IKANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERDHACVVG YR PKK KAA
Sbjct: 259 IKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKPKAA 317

[Close]

BLAST of Carg15118 vs. Swiss-Prot
Match: sp|Q9FEF8|MD36B_ARATH (Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana OX=3702 GN=MED36B PE=1 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 5.7e-121
Identity = 215/240 (89.58%), Postives = 226/240 (94.17%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRVWNPFRSK
Sbjct: 68  KVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSK 127

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNM
Sbjct: 128 LAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNM 187

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GGHFVIS
Sbjct: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVIS 247

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG YR PKKQK  A
Sbjct: 248 IKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQKTPA 307

[Close]

BLAST of Carg15118 vs. Swiss-Prot
Match: sp|P22232|FBRL_XENLA (rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.7e-104
Identity = 188/238 (78.99%), Postives = 209/238 (87.82%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDG-TKVEYRVWNPFRS 124
           KV+VEPHRHEGIFI +GKEDALVTKN+V GESVY EKRISV  EDG  K EYR WNPFRS
Sbjct: 87  KVIVEPHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRS 146

Query: 125 KLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVN 184
           K+AAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDVVGP G+VYAVEFSHRSGRDL+N
Sbjct: 147 KIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLIN 206

Query: 185 MAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVI 244
           +AKKRTN+IP+IEDARHP KYR+LVGMVDV+F+DVAQPDQ RI+ALNA  FLK GGHFVI
Sbjct: 207 VAKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGHFVI 266

Query: 245 SIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK 302
           SIKANCIDST   EAVFA+EV K++ +  KP EQ+TLEP+ERDHA VVGIYR P KQK
Sbjct: 267 SIKANCIDSTAAPEAVFAAEVKKMQQENMKPQEQLTLEPYERDHAVVVGIYRPPPKQK 322

[Close]

BLAST of Carg15118 vs. Swiss-Prot
Match: sp|Q8I1F4|FBRL_DROER (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.7e-104
Identity = 184/235 (78.30%), Postives = 209/235 (88.94%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYRVWNPFRSKL
Sbjct: 112 VTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKL 171

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGV+ I + PG++VLYLGAASGTTVSHVSDVVGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 172 AAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVA 231

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISI
Sbjct: 232 KKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISI 291

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQ 301
           KA+CIDST   EAVFASEV K++AD+ KP EQ+TLEP+ERDHA VVG+YR P KQ
Sbjct: 292 KASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 345

[Close]

BLAST of Carg15118 vs. Swiss-Prot
Match: sp|P22509|FBRL_RAT (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=1 SV=2)

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-103
Identity = 182/236 (77.12%), Postives = 208/236 (88.14%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   K+EYR WNPFRSKL
Sbjct: 92  VMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNPFRSKL 151

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+A
Sbjct: 152 AAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA 211

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISI
Sbjct: 212 KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 271

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQK 302
           KANCIDST  AEAVFASEV K++ +  KP EQ+TLEP+ERDHA VVG+YR P K K
Sbjct: 272 KANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKAK 326

[Close]

BLAST of Carg15118 vs. TrEMBL
Match: tr|A0A0A0KLF9|A0A0A0KLF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174640 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.7e-130
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           V+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIS+QNEDGTKVEYRVWNPFRSKL
Sbjct: 69  VIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISIQNEDGTKVEYRVWNPFRSKL 128

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA
Sbjct: 129 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 188

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI
Sbjct: 189 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 248

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305
           KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 249 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 307

[Close]

BLAST of Carg15118 vs. TrEMBL
Match: tr|A0A1S3AY25|A0A1S3AY25_CUCME (mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=3656 GN=LOC103484122 PE=3 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 2.9e-130
Identity = 237/239 (99.16%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           VVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTK+EYRVWNPFRSKL
Sbjct: 67  VVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVWNPFRSKL 126

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA
Sbjct: 127 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 186

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI
Sbjct: 187 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 246

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305
           KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 247 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305

[Close]

BLAST of Carg15118 vs. TrEMBL
Match: tr|A0A0A0L9V7|A0A0A0L9V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183360 PE=3 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 2.9e-130
Identity = 236/240 (98.33%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKR+SVQNEDGTK+EYRVWNPFRSK
Sbjct: 68  KVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRVSVQNEDGTKIEYRVWNPFRSK 127

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP+GIVYAVEFSHRSGRDLVNM
Sbjct: 128 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNM 187

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS
Sbjct: 188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 247

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 304
           IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA
Sbjct: 248 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 307

[Close]

BLAST of Carg15118 vs. TrEMBL
Match: tr|A0A1S3CT72|A0A1S3CT72_CUCME (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucumis melo OX=3656 GN=LOC103504613 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 3.2e-129
Identity = 236/239 (98.74%), Postives = 237/239 (99.16%), Query Frame = 0


Query: 66  VVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKL 125
           VVVEPHRHEGIFIAKGKEDALVTKNMV GESVYNEKRI+VQNEDGTKVEYRVWNPFRSKL
Sbjct: 67  VVVEPHRHEGIFIAKGKEDALVTKNMVVGESVYNEKRIAVQNEDGTKVEYRVWNPFRSKL 126

Query: 126 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 185
           AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA
Sbjct: 127 AAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMA 186

Query: 186 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 245
           KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI
Sbjct: 187 KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISI 246

Query: 246 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 305
           KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKA A
Sbjct: 247 KANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAVA 305

[Close]

BLAST of Carg15118 vs. TrEMBL
Match: tr|A0A072U8T6|A0A072U8T6_MEDTR (Mediator of RNA polymerase II transcription subunit 36a OS=Medicago truncatula OX=3880 GN=25496400 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.2e-123
Identity = 222/239 (92.89%), Postives = 233/239 (97.49%), Query Frame = 0


Query: 65  KVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 124
           KVVVEPHRHEGIFIAKGKEDALVTKN+V GE+VYNEKR+SVQNEDGTKVEYR+WNPFRSK
Sbjct: 70  KVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFRSK 129

Query: 125 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 184
           LAAAVLGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGPTG+VYAVEFSHRSGRDLVNM
Sbjct: 130 LAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNM 189

Query: 185 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 244
           AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARIL LNASY+LKAGGHFVIS
Sbjct: 190 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVIS 249

Query: 245 IKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAA 304
           IKANCIDSTVPAEAVF+SEVNKLKADQFKP EQVTLEPFERDHACVVG YR PKK+K A
Sbjct: 250 IKANCIDSTVPAEAVFSSEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDA 308

The following BLAST results are available for this feature:

BLAST of Carg15118 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984980.1	4.0e-131	100.00	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxi...	[more]
XP_022922917.1	8.9e-131	99.58	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita mosc...	[more]
XP_023552409.1	1.5e-130	100.00	mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub...	[more]
XP_004143621.2	2.6e-130	99.16	PREDICTED: probable mediator of RNA polymerase II transcription subunit 36b [Cuc...	[more]
XP_004140765.1	4.4e-130	98.33	PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis...	[more]

BLAST of Carg15118 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25630.1	6.4e-123	89.96	fibrillarin 2	[more]
AT5G52470.1	3.2e-122	89.58	fibrillarin 1	[more]
AT5G52490.1	1.2e-92	70.21	Fibrillarin family protein	[more]

BLAST of Carg15118 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94AH9\|MD36A_ARATH	1.2e-121	89.96	Mediator of RNA polymerase II transcription subunit 36a OS=Arabidopsis thaliana ...	[more]
sp\|Q9FEF8\|MD36B_ARATH	5.7e-121	89.58	Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis ...	[more]
sp\|P22232\|FBRL_XENLA	1.7e-104	78.99	rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis OX=8355 GN=fbl PE=2 SV...	[more]
sp\|Q8I1F4\|FBRL_DROER	3.7e-104	78.30	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3...	[more]
sp\|P22509\|FBRL_RAT	1.1e-103	77.12	rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=...	[more]

BLAST of Carg15118 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLF9\|A0A0A0KLF9_CUCSA	1.7e-130	99.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174640 PE=3 SV=1	[more]
tr\|A0A1S3AY25\|A0A1S3AY25_CUCME	2.9e-130	99.16	mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=...	[more]
tr\|A0A0A0L9V7\|A0A0A0L9V7_CUCSA	2.9e-130	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183360 PE=3 SV=1	[more]
tr\|A0A1S3CT72\|A0A1S3CT72_CUCME	3.2e-129	98.74	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucumis melo...	[more]
tr\|A0A072U8T6\|A0A072U8T6_MEDTR	1.2e-123	92.89	Mediator of RNA polymerase II transcription subunit 36a OS=Medicago truncatula O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0008168	methyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR029063	SAM-dependent_MTases
IPR020813	Fibrillarin_CS
IPR000692	Fibrillarin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15118-RA	Carg15118-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000692	Fibrillarin	PRINTS	PR00052	FIBRILLARIN	coord: 114..133 score: 75.71 coord: 273..294 score: 61.36 coord: 141..162 score: 79.22 coord: 86..105 score: 64.29 coord: 166..183 score: 72.22 coord: 191..220 score: 70.24 coord: 221..250 score: 67.62
IPR000692	Fibrillarin	SMART	SM01206	Fibrillarin_2	coord: 68..296 e-value: 5.4E-173 score: 590.7
IPR000692	Fibrillarin	PFAM	PF01269	Fibrillarin	coord: 68..295 e-value: 8.8E-110 score: 365.1
IPR000692	Fibrillarin	PIRSF	PIRSF006540	Nop17p	coord: 23..298 e-value: 2.3E-121 score: 401.8
IPR000692	Fibrillarin	HAMAP	MF_00351	RNA_methyltransf_FlpA	coord: 82..295 score: 36.98
None	No IPR available	GENE3D	G3DSA:3.40.50.150		coord: 119..296 e-value: 2.6E-89 score: 299.3
None	No IPR available	GENE3D	G3DSA:3.30.200.20		coord: 63..118 e-value: 2.8E-29 score: 102.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR10335	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	coord: 6..301
None	No IPR available	PANTHER	PTHR10335:SF4	RRNA 2'-O-METHYLTRANSFERASE FIBRILLARIN	coord: 6..301
IPR020813	Fibrillarin, conserved site	PROSITE	PS00566	FIBRILLARIN	coord: 166..180
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 66..294

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15118	Cla006158	Watermelon (97103) v1	carwmB0990
Carg15118	Csa3G183360	Cucumber (Chinese Long) v2	carcuB1004
Carg15118	MELO3C006945	Melon (DHL92) v3.5.1	carmeB0963
Carg15118	ClCG05G008250	Watermelon (Charleston Gray)	carwcgB0965
Carg15118	CSPI03G17160	Wild cucumber (PI 183967)	carcpiB1027
Carg15118	Cucsa.108020	Cucumber (Gy14) v1	carcgyB1105
Carg15118	CmoCh18G012890	Cucurbita moschata (Rifu)	carcmoB1328
Carg15118	Lsi05G012070	Bottle gourd (USVL1VR-Ls)	carlsiB903
Carg15118	Cp4.1LG09g00780	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15118	CsGy3G017230	Cucumber (Gy14) v2	carcgybB0976
Carg15118	MELO3C006945.2	Melon (DHL92) v3.6.1	carmedB0972
Carg15118	CsaV3_3G017360	Cucumber (Chinese Long) v3	carcucB1032
Carg15118	Cla97C05G090350	Watermelon (97103) v2	carwmbB1042
Carg15118	Bhi01G000934	Wax gourd	carwgoB1159

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15118	Carg22119	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15118	Watermelon (97103) v2	carwmbB1041
Carg15118	Silver-seed gourd	carcarB585
Carg15118	Cucurbita maxima (Rimu)	carcmaB1364
Carg15118	Cucurbita maxima (Rimu)	carcmaB1365
Carg15118	Cucurbita maxima (Rimu)	carcmaB1366
Carg15118	Cucurbita maxima (Rimu)	carcmaB1368
Carg15118	Cucurbita maxima (Rimu)	carcmaB1369
Carg15118	Cucurbita moschata (Rifu)	carcmoB1325
Carg15118	Cucurbita moschata (Rifu)	carcmoB1326
Carg15118	Cucurbita moschata (Rifu)	carcmoB1329
Carg15118	Cucurbita pepo (Zucchini)	carcpeB1375
Carg15118	Cucurbita pepo (Zucchini)	carcpeB1376
Carg15118	Cucurbita pepo (Zucchini)	carcpeB1377
Carg15118	Melon (DHL92) v3.5.1	carmeB0966
Carg15118	Melon (DHL92) v3.6.1	carmedB0975
Carg15118	Watermelon (Charleston Gray)	carwcgB0964