Carg15051 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15051
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_078 : 286839 .. 291053 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAAATCCGAATCATTGATGTTGTCTGTCTGTTCCATGAAAGTAAAATTGTGAACTTTGCAAATAATAGAGTCCCACCGCCCCAACCCAACGGCTTCCCAAAGGGAACAACCGGGCTGACCTACCTTCAACATTCAAGGGACTCGCTGTTTCATCCTAAATTCACCGCCTTTTTGAAGGAGCATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGGTAATAAACAAACAACTCCATTGTCTACCCTCTTTTCCCGCTTGTTTCGTACATTTGGAATTAGGGTTTTCTTGTGGCCACTGAATTTGAGGTTTCCCCATATATCCCCAGTTGCTAAATTGTACTTCGATTTTAACGAACTTTGAGTGGAAGATGGGATTACTGGAAAACCGTAATATGCAGAGATTGATTCTGTTAACATGGGTTTTCTCTTAAAATCTTATCTTCATCCATTTGCTGTAGACGTGTTTGGAACTTTCCAGAATGGTTGGAAGGCGGTTCCCTGCGTGCTGTTCTACACCATCCAACCTCATCATTAAGTGCGATTTGTGCATGATTCTGTTGTCCTTCAAGATATTTTCTTGCTCTATATCTCAAAATTTTACTGATTCGCTGACCACGTTTTGTGGAACTAAGTATCTCCATAAGTCAAATTAGACAGATTTATTGGTTTTCACGAGTGTTAGGATCGTAGTGACTAGAGGGTGTCCTTAATGCGCACTTCGAAATGATCTGATATGAACCAAGAGACATCATTCATACAATATACTTTATTTCAACAATATTTTCTTCACATCTTCATTGAAGTATATTGTATGAATGATGTCTCTTGGTTCATATCATGATCTGTTCTCCTATTATTGAGTTCTTACTTGTAACATTTTGGTAAAAGGCTCAAAGAACGCCACTAAAGGAATGCGTTTTTGTCAACCATGTTTCTAGTTTCTATTCAGAGTATGATTCTTTAAGAGATTTTCCAGAAACAAACCAATTCATTAAAACAAGAAGGTAAAATGGTGGTCTACTAATGTTCATTACTGAATTCTTTGCATATTAATGTTCACATCATTCTTTATGTTCTTGACCTAGTACACTTTCATTTTTTTGAGTCATGATGTCACTGTTGATTGAAGCAACACAATTCTGTGTGACCTCCTTTGCAGACACTTTGTTTCTTTTTCTGTTCTTTATTTTGCACATAATTCGTGGTTAATGTCTTGTAGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGGTACTTGTTTCACTTTGAAGGTTCAATTCTGTTTTCTATGTGTTTTCACATTCAAGTTCATTCTATTTAACCACGCAACTTCATTTCTTTTTCCAGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCGTATCTTTTTCTAATTTTTTCCATTTTGCATTCTTGTATTGTTAAAGGCATTCTTGTATTGTGTTACATTGTCTCCCTCACATTCCCCCGTAGATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATGTAAGTTGATATGTTGAAACTCTGTTTTCATTTAATATGGGACGCCATTAACTAAAAAATGAATTTTCTTTACCTAACGTGTGCAGCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGTCACTATTGGAGAATTATGTGCCTTTAATTTATATATTTATTTTGACTCGTCTTCACGAAAAAATTATCCATTTGTCTTTCTCCTGCATAATTTGTGATGTCCTTTAGATGTCTTTACCCAAACATGGGCACATTTGTGTTTATATATCTATACAAGCTATTCTCCCAAGGTACAGATTCAGACATGTTTGGGGATGGTTTTTTATGTGTATCATATGGCTCTCTTTTCTCCATAGATGGGAATGTATTTGCATGTGTATCATAGGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTAGTTTTGTAATTGGTATCATAGATTATGCAGTCCAGCATTTCATGTTGACTTTCAGTTCTTCAGCAGATGTGAAGCGTATTACATTTAGGACCAACTAGCCATGAAGTTTTAAATTATGTTTATTAGTTTAATTGTGTGATTAACTCGATGATCTTTGACCTATACATTCGATACCCTTTCTAATGTTCACGTTAAAATTTGGACTTGGAGTCGTGATTCATACACCTCAGTTGTTGGGAAGACTAAATCATGGTCGCCAAACTCAACCGTGAGATCACATCGCCATGAGTGTAATAAGGTCCTTTGTGATATGCCCTTTTGAATTAAATAGTAAAGTTGAGTATGAAAAAATATAAAGGTGATAATTATACCATTTGTGATTCAAATCGTTTTGCCACGCCTTGTATCCGATATCTGTTCTTTTCCTATCTCGTCGTTCTACACGTAGCTGTTGCATATGTCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGTGATAAAACGCCTTCTTTGATCCACTCGACCAATTATTTTCTTTGCCACATGGTAAAGTCCAAGGAAAAGTTTATTTAAACGTTGAATCACTCTAAATCGTGGATGAATCTTGTGTAGGATTTGCGCGTACTGTGAAGTTATGAATTTGAGGCAATGTGACAGTCGGATATCAAAAACCGGAGCGTATTAGTTAGGACCGATCGAATTCGTAAACATTAATATGTGTTGGAATCTTGTGATTTGTGGCGTTATTTTATGTTTACAATCTCACTCTGTATTTATGCGTGCTGCTACGAACGTGTTGTTGAGCTGTGCTGTGGGGATAAATTTTTGCGTTGATCATTATTTTCGACTAAGTGAGAATTTCAGCTCAACAATATCCAGACATGAGTTCAGCGACGAAAAGAAGTGGGCTTACTTATAGATTACAGTTCATTGTTATTTTCCTTCATTTTTCAATTTAAAACTATGTTCCAAAGCTGTGCATTTTGTCTGAGAAGAGTTTTTCTTTACTGCAATGTGATCAGGTAGAGAATAAACTGCATTCTCGAGCTGACATGATGCATTGAGTTTGGAGACTACGGAATGCTGTAAATTGGAGTATTCATTTTTTAGATCTTTGGTGGTTTCGTGCACCATCGCTCTAGACATAGGATTCACAACACTTCTCCGCCCTAGCCCTATATTGGAAATGCTTTCCCTCTGGGCATGTATAGATGCAATTCCAATTGTGGAGTCACTACTGAAGGCCAACTGATTAGCCCTATGTTGGGTTTGTCTTTATGATTGCAAGGAGCTTTGGCAATTGCTGCTAAGACTTAAGCTTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTCTACTGGTGAGTGATTGGGTTGATTTGGGGCTCGAGAAAAATTGCAACATGATTCTGGTGTACCAGAAATAGACAATGGGAGTGTAAGTAATAGGAACGAACTTCATATCAGAGCTTGTTGTTGCTGTTGCTGCTGCTGCTGCAGCATTTATGGTGAGGAAATTTATGCACACAAAACGTGGTTGTCTGTCTCATGAAGAGGACATTTTTCTGTAACAATGGAGGAAGTCTTTGCTTCCAGCTTAGAGACAGA

mRNA sequence

AGGAAATCCGAATCATTGATGTTGTCTGTCTGTTCCATGAAAGTAAAATTGTGAACTTTGCAAATAATAGAGTCCCACCGCCCCAACCCAACGGCTTCCCAAAGGGAACAACCGGGCTGACCTACCTTCAACATTCAAGGGACTCGCTGTTTCATCCTAAATTCACCGCCTTTTTGAAGGAGCATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGATTTGCGCGTACTGTGAAGTTATGAATTTGAGGCAATGTGACAGTCGGATATCAAAAACCGGAGCGTATTAGTTAGGACCGATCGAATTCGTAAACATTAATATGTGTTGGAATCTTGTGATTTGTGGCGTTATTTTATGTTTACAATCTCACTCTGTATTTATGCGTGCTGCTACGAACGTGTTGTTGAGCTGTGCTGTGGGGATAAATTTTTGCGTTGATCATTATTTTCGACTAAGTGAGAATTTCAGCTCAACAATATCCAGACATGAGTTCAGCGACGAAAAGAAGTGGGCTTACTTATAGATTACAGTTCATTGTTATTTTCCTTCATTTTTCAATTTAAAACTATGTTCCAAAGCTGTGCATTTTGTCTGAGAAGAGTTTTTCTTTACTGCAATGTGATCAGGTAGAGAATAAACTGCATTCTCGAGCTGACATGATGCATTGAGTTTGGAGACTACGGAATGCTGTAAATTGGAGTATTCATTTTTTAGATCTTTGGTGGTTTCGTGCACCATCGCTCTAGACATAGGATTCACAACACTTCTCCGCCCTAGCCCTATATTGGAAATGCTTTCCCTCTGGGCATGTATAGATGCAATTCCAATTGTGGAGTCACTACTGAAGGCCAACTGATTAGCCCTATGTTGGGTTTGTCTTTATGATTGCAAGGAGCTTTGGCAATTGCTGCTAAGACTTAAGCTTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTCTACTGGTGAGTGATTGGGTTGATTTGGGGCTCGAGAAAAATTGCAACATGATTCTGGTGTACCAGAAATAGACAATGGGAGTGTAAGTAATAGGAACGAACTTCATATCAGAGCTTGTTGTTGCTGTTGCTGCTGCTGCTGCAGCATTTATGGTGAGGAAATTTATGCACACAAAACGTGGTTGTCTGTCTCATGAAGAGGACATTTTTCTGTAACAATGGAGGAAGTCTTTGCTTCCAGCTTAGAGACAGA

Coding sequence (CDS)

ATGTCGGACGCTTATTGGAGGTATAGCGACTCGCAGCAGCAACCTCCGTCGTCGGTTCCTTCCGTCGCCGGGAAGCGCCCTCGCGTCGATTACGATACCAGTGGTCCTCACGATTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAATCCTCCAAGGAATTAAAAGCGTTGATTCCATCAATGAGTCCTATGAACGTTACCTGCGCAGCTCGAAAATTTCATCTTATGGTGGACAGTCTGCTAGACCCGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCTCCTCCTATAGTCGGGATTGGGGGTGTGGTTTCAGGGGCCAATGTTAATGATAGAAGTGCGAGCTTTGGAGGTGGAAGGCCTAACGTACCCCTTCCTCCAGATGCTTCTAATACACTATTTGTTGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAATAGCTCATATATTTCGCCCTTTTGTGGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCAATGGATGCCTTACAAGGTGTGCTTGCAGCTTTAATTATCATTTTCTTTACCGTTGTTTTCTGGCTGTTGAACATTTGCACTTTTGTTTTTGTCTCTCGACAGATGGTTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATGTGAGTTTGTCGATGCTATCCTGCATTCGACCGGTGGGAAATCTTGTTGCAATTTGCTCGCTTTCCTGGTGCAAGGTCAGGTGGTGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCGCAGGATTTGCGCGTACTGTGAAGTTATGA

Protein sequence

MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVLRFQVVWLEECEFVDAILHSTGGKSCCNLLAFLVQGQVVGIVESVELCDFAGFARTVKL

Homology

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BLAST of Carg15051 vs. NCBI nr
Match: XP_022923071.1 (RNA-binding protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 454.9 bits (1169), Expect = 2.0e-124
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVL 232
           GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFV RQM L
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVCRQMSL 231

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BLAST of Carg15051 vs. NCBI nr
Match: XP_023553421.1 (RNA-binding protein 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.9 bits (1169), Expect = 2.0e-124
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRS+KISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSAKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGVLAALIIIFFTVVFWLLNICTFVFVSRQMVL 232
           GFVDFVSPAHAATAMDALQGVLAALII FFTVVFWLLNICTFVFVSRQM L
Sbjct: 181 GFVDFVSPAHAATAMDALQGVLAALIINFFTVVFWLLNICTFVFVSRQMSL 231

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BLAST of Carg15051 vs. NCBI nr
Match: XP_023553422.1 (RNA-binding protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRS+KISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSAKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. NCBI nr
Match: XP_023553425.1 (RNA-binding protein 2-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 2.2e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRS+KISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSAKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

[Close]

BLAST of Carg15051 vs. NCBI nr
Match: XP_022923074.1 (RNA-binding protein 2-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 407.5 bits (1046), Expect = 3.7e-110
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLP+YYPRQDDRPILQGIKSVDS
Sbjct: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPDYYPRQDDRPILQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG
Sbjct: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL
Sbjct: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 200

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BLAST of Carg15051 vs. TAIR10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding)

HSP 1 Score: 131.3 bits (329), Expect = 9.3e-31
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 38  DLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGG---------- 97
           D+ +Y  + +DR I   +K   SI  +Y+RYL+S +      + A P  G          
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 98  GVPGHSINDPPPIVGIGG-VVSGANVNDRSASFG-------GGRPNVPLPPDASNTLFVE 157
            +PG S+ +   + G GG + S    N R   FG        GR   PLPPD SNTL+VE
Sbjct: 271 MMPGPSMGE--LMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVE 330

Query: 158 GLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ 200
           GLPS+C+RRE++HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ
Sbjct: 331 GLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQ 388

[Close]

BLAST of Carg15051 vs. TAIR10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 91/232 (39.22%), Postives = 114/232 (49.14%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYD----TSGPHDLPNYYPRQDDRPILQGIK 60
           M+D YW     Q  PP        KRPR D++    T        YYPR +D      + 
Sbjct: 1   MADGYWNQQRQQHHPPGG----PMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVP 60

Query: 61  SVDSINESYERYLRSSKISSYGGQS---------------------------ARPVGGGV 120
              +I  +Y+RYL+S +    G  S                             P+  G 
Sbjct: 61  DTRTIGSAYDRYLQSVQSGEGGSVSMGXXXXXXXXXXXXXXTIDDFMLRRGGVLPLDHGP 120

Query: 121 PGHSIN-DPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRR 180
            GH+I  DPP  V                    GR N  LP DASNTL+VEGLPS+C+RR
Sbjct: 121 NGHTIGFDPPEPV--------------------GRRN--LPSDASNTLYVEGLPSNCSRR 180

Query: 181 EIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           E+AHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA AATA+ ALQG
Sbjct: 181 EVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQG 202

[Close]

BLAST of Carg15051 vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 120 GGGRPNVP-LPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPV 179
           GG +PN+P  P   +N LFV+ LP   T   +  +F  + G+KEVR++  +   PG    
Sbjct: 162 GGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAK---PG---- 221

Query: 180 VLGFVDFVSPAHAATAMDALQG 201
            + FV+F     +  AM  LQG
Sbjct: 222 -IAFVEFADEMQSTVAMQGLQG 235

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BLAST of Carg15051 vs. Swiss-Prot
Match: sp|G7ID19|RBP2_MEDTR (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 93/225 (41.33%), Postives = 133/225 (59.11%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDT-----SGPHDLPNYYPRQDDRPILQGI 60
           M+D +W        PP  +     KRPR +YDT     +  +++ NY  + +   +L   
Sbjct: 1   MADGFWNRQQQHLPPPGGML----KRPRTEYDTAPSGVTSGNEVHNYIAQNNGHQMLNDT 60

Query: 61  KSVDSINESYERYLRSSKISSYGGQSARPVG--------GGVPGHSINDPPPIVGIGGVV 120
           K + S   +Y+R+L+S+ ++S+    A  +G        G +PGHS+ DP  +  + GV 
Sbjct: 61  KILGS---AYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVG 120

Query: 121 SGANV--NDRSASFGG----------GRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFR 180
            G ++  N R  +FGG          G   +PLP DAS+TL+VEGLPS  T+RE+AHIFR
Sbjct: 121 GGPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFR 180

Query: 181 PFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           PFVGY+EVRLV KES++ G DP++L FVDF +PA AATA+ ALQG
Sbjct: 181 PFVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQG 218

[Close]

BLAST of Carg15051 vs. Swiss-Prot
Match: sp|Q8H0P8|RBP1_MEDTR (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVP-SVAGKRPRVDYDTSGPHDLP-----NYYPRQDDRPILQG 60
           M+D YW    ++QQ  S +P S   KRPR DY+      LP     +Y  R++DR     
Sbjct: 1   MADGYW----NRQQ--SLLPHSGLHKRPRPDYEMPA-SGLPSGNEMHYLSREEDRSGHPM 60

Query: 61  IKSVDSINESYERYLRSSKISSYGGQSARPVG--------GGVPGHSINDPPPIVG-IGG 120
           +K   +I  +Y+RYL+  ++ S+    A  VG        GG+P HS++DP  ++G  GG
Sbjct: 61  VKDSKTIGSAYDRYLQ-GQVPSFTSGEASTVGALGLQRGIGGLPNHSLSDPSAMIGRHGG 120

Query: 121 VVSGANVNDRSASFGGGRPNVP----------LPPDASNTLFVEGLPSSCTRREIAHIFR 180
                  N R  ++G   P  P          LPPDAS TL++EGLPS CTRRE+AHIFR
Sbjct: 121 GGPDLAPNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFR 180

Query: 181 PFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           PFVGY+EVRLV+KE+++ G DP++L FVDF +PA AATA+ ALQG
Sbjct: 181 PFVGYREVRLVSKEAKHRG-DPLILCFVDFANPACAATALSALQG 216

[Close]

BLAST of Carg15051 vs. Swiss-Prot
Match: sp|F4HWF9|NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-29
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 38  DLPNYYPRQDDRPILQGIKSVDSINESYERYLRSSKISSYGGQSARPVGG---------- 97
           D+ +Y  + +DR I   +K   SI  +Y+RYL+S +      + A P  G          
Sbjct: 211 DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSN 270

Query: 98  GVPGHSINDPPPIVGIGG-VVSGANVNDRSASFG-------GGRPNVPLPPDASNTLFVE 157
            +PG S+ +   + G GG + S    N R   FG        GR   PLPPD SNTL+VE
Sbjct: 271 MMPGPSMGE--LMAGCGGSLPSDFRPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVE 330

Query: 158 GLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ 200
           GLPS+C+RRE++HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQ
Sbjct: 331 GLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQ 388

[Close]

BLAST of Carg15051 vs. Swiss-Prot
Match: sp|A1A6K6|NSRA_ARATH (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-29
Identity = 91/232 (39.22%), Postives = 114/232 (49.14%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYD----TSGPHDLPNYYPRQDDRPILQGIK 60
           M+D YW     Q  PP        KRPR D++    T        YYPR +D      + 
Sbjct: 1   MADGYWNQQRQQHHPPGG----PMKRPRSDFEAPSSTMTIGHGGGYYPRDED----LDVP 60

Query: 61  SVDSINESYERYLRSSKISSYGGQS---------------------------ARPVGGGV 120
              +I  +Y+RYL+S +    G  S                             P+  G 
Sbjct: 61  DTRTIGSAYDRYLQSVQSGEGGSVSMGXXXXXXXXXXXXXXTIDDFMLRRGGVLPLDHGP 120

Query: 121 PGHSIN-DPPPIVGIGGVVSGANVNDRSASFGGGRPNVPLPPDASNTLFVEGLPSSCTRR 180
            GH+I  DPP  V                    GR N  LP DASNTL+VEGLPS+C+RR
Sbjct: 121 NGHTIGFDPPEPV--------------------GRRN--LPSDASNTLYVEGLPSNCSRR 180

Query: 181 EIAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQG 201
           E+AHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA AATA+ ALQG
Sbjct: 181 EVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQG 202

[Close]

BLAST of Carg15051 vs. Swiss-Prot
Match: sp|Q6JB11|MEG5_MAIZE (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-29
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRP  PLPPDAS+TL++EGLP++CTRRE++HIFRPFVG++EVRLVNKESR+PG DP VL
Sbjct: 25  GGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVL 84

Query: 181 GFVDFVSPAHAATAMDALQG 201
            FVDF +PA A  A++ALQG
Sbjct: 85  CFVDFDNPAQATIALEALQG 104

[Close]

BLAST of Carg15051 vs. TrEMBL
Match: tr|A0A1S4E1R0|A0A1S4E1R0_CUCME (RNA-binding protein 2-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103496055 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.9e-101
Identity = 182/200 (91.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+GIGGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHLMND-PPILGIGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 199

[Close]

BLAST of Carg15051 vs. TrEMBL
Match: tr|A0A1S3C3F7|A0A1S3C3F7_CUCME (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496055 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.9e-101
Identity = 182/200 (91.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+GIGGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHLMND-PPILGIGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 199

[Close]

BLAST of Carg15051 vs. TrEMBL
Match: tr|A0A0A0L796|A0A0A0L796_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238140 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 7.9e-101
Identity = 182/200 (91.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDTSG H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTSGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+G+GGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHPMND-PPILGLGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNMPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQG 201
           GFVDFVSPAHAATAMDALQG
Sbjct: 181 GFVDFVSPAHAATAMDALQG 199

[Close]

BLAST of Carg15051 vs. TrEMBL
Match: tr|A0A1S3C2W2|A0A1S3C2W2_CUCME (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496055 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.0e-100
Identity = 182/201 (90.55%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+GIGGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHLMND-PPILGIGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQGV 202
           GFVDFVSPAHAATAMDALQ V
Sbjct: 181 GFVDFVSPAHAATAMDALQEV 200

[Close]

BLAST of Carg15051 vs. TrEMBL
Match: tr|A0A1S3C2A8|A0A1S3C2A8_CUCME (RNA-binding protein 2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496055 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 3.9e-100
Identity = 181/199 (90.95%), Postives = 192/199 (96.48%), Query Frame = 0


Query: 1   MSDAYWRYSDSQQQPPSSVPSVAGKRPRVDYDTSGPHDLPNYYPRQDDRPILQGIKSVDS 60
           MSDAYWRY+DSQQQPPSSVP V GKRPRVDYDT+G H+LPNYYPRQDDRP+LQGIKSVDS
Sbjct: 1   MSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDS 60

Query: 61  INESYERYLRSSKISSYGGQSARPVGGGVPGHSINDPPPIVGIGGVVSGANVNDRSASFG 120
           INESYERYLR+S+ISSYGGQSARPVGGGVPGH +ND PPI+GIGGVVSGANVNDRS SFG
Sbjct: 61  INESYERYLRTSQISSYGGQSARPVGGGVPGHLMND-PPILGIGGVVSGANVNDRSTSFG 120

Query: 121 GGRPNVPLPPDASNTLFVEGLPSSCTRREIAHIFRPFVGYKEVRLVNKESRNPGRDPVVL 180
           GGRPN+PLPPDASNTLFVEGLPSSCTRRE+AHIFRPFVGYKEVRLVNKESR+ GRDPVVL
Sbjct: 121 GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVL 180

Query: 181 GFVDFVSPAHAATAMDALQ 200
           GFVDFVSPAHAATAMDALQ
Sbjct: 181 GFVDFVSPAHAATAMDALQ 198

The following BLAST results are available for this feature:

BLAST of Carg15051 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923071.1	2.0e-124	98.70	RNA-binding protein 2-like isoform X1 [Cucurbita moschata]	[more]
XP_023553421.1	2.0e-124	98.70	RNA-binding protein 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023553422.1	2.2e-110	99.50	RNA-binding protein 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023553425.1	2.2e-110	99.50	RNA-binding protein 2-like isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_022923074.1	3.7e-110	99.50	RNA-binding protein 2-like isoform X4 [Cucurbita moschata]	[more]

BLAST of Carg15051 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21320.1	9.3e-31	43.89	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	1.2e-30	39.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	1.6e-06	35.37	spliceosomal protein U1A	[more]

BLAST of Carg15051 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|G7ID19\|RBP2_MEDTR	1.3e-37	41.33	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
sp\|Q8H0P8\|RBP1_MEDTR	1.3e-34	44.00	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
sp\|F4HWF9\|NSRB_ARATH	1.7e-29	43.89	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
sp\|A1A6K6\|NSRA_ARATH	2.2e-29	39.22	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
sp\|Q6JB11\|MEG5_MAIZE	4.9e-29	72.50	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Carg15051 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1R0\|A0A1S4E1R0_CUCME	7.9e-101	91.00	RNA-binding protein 2-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103496055 PE...	[more]
tr\|A0A1S3C3F7\|A0A1S3C3F7_CUCME	7.9e-101	91.00	RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496055 PE...	[more]
tr\|A0A0A0L796\|A0A0A0L796_CUCSA	7.9e-101	91.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238140 PE=4 SV=1	[more]
tr\|A0A1S3C2W2\|A0A1S3C2W2_CUCME	3.0e-100	90.55	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496055 PE...	[more]
tr\|A0A1S3C2A8\|A0A1S3C2A8_CUCME	3.9e-100	90.95	RNA-binding protein 2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496055 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15051-RA	Carg15051-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 135..211 e-value: 3.9E-4 score: 29.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 136..200 e-value: 1.1E-9 score: 37.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 134..200 score: 9.917
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 128..204 e-value: 7.1E-15 score: 56.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10501:SF39	SUBFAMILY NOT NAMED	coord: 1..201
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 1..201
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 134..201 e-value: 2.38484E-30 score: 109.667
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 128..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15051	Cla004275	Watermelon (97103) v1	carwmB0990
Carg15051	Csa3G238140	Cucumber (Chinese Long) v2	carcuB1001
Carg15051	MELO3C019380	Melon (DHL92) v3.5.1	carmeB0966
Carg15051	ClCG05G009110	Watermelon (Charleston Gray)	carwcgB0965
Carg15051	CSPI03G19610	Wild cucumber (PI 183967)	carcpiB1024
Carg15051	Cucsa.032340	Cucumber (Gy14) v1	carcgyB1104
Carg15051	CmoCh16G000390	Cucurbita moschata (Rifu)	carcmoB1326
Carg15051	Lsi05G001200	Bottle gourd (USVL1VR-Ls)	carlsiB904
Carg15051	Cp4.1LG14g06980	Cucurbita pepo (Zucchini)	carcpeB1376
Carg15051	CsGy3G019550	Cucumber (Gy14) v2	carcgybB0974
Carg15051	MELO3C019380.2	Melon (DHL92) v3.6.1	carmedB0976
Carg15051	CsaV3_3G019670	Cucumber (Chinese Long) v3	carcucB1030
Carg15051	Cla97C05G091440	Watermelon (97103) v2	carwmbB1042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15051	Wax gourd	carwgoB1157
Carg15051	Wax gourd	carwgoB1160
Carg15051	Silver-seed gourd	carcarB494
Carg15051	Silver-seed gourd	carcarB503
Carg15051	Cucumber (Gy14) v1	carcgyB1107
Carg15051	Cucumber (Gy14) v2	carcgybB0978
Carg15051	Cucurbita maxima (Rimu)	carcmaB1364
Carg15051	Cucurbita maxima (Rimu)	carcmaB1365
Carg15051	Cucurbita maxima (Rimu)	carcmaB1366
Carg15051	Cucurbita maxima (Rimu)	carcmaB1368
Carg15051	Cucurbita maxima (Rimu)	carcmaB1369
Carg15051	Cucurbita moschata (Rifu)	carcmoB1325
Carg15051	Cucurbita moschata (Rifu)	carcmoB1328
Carg15051	Cucurbita moschata (Rifu)	carcmoB1329
Carg15051	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15051	Cucurbita pepo (Zucchini)	carcpeB1375
Carg15051	Cucurbita pepo (Zucchini)	carcpeB1377
Carg15051	Wild cucumber (PI 183967)	carcpiB1029
Carg15051	Cucumber (Chinese Long) v2	carcuB1005
Carg15051	Cucumber (Chinese Long) v3	carcucB1035
Carg15051	Bottle gourd (USVL1VR-Ls)	carlsiB902
Carg15051	Melon (DHL92) v3.5.1	carmeB0962
Carg15051	Melon (DHL92) v3.6.1	carmedB0970
Carg15051	Watermelon (Charleston Gray)	carwcgB0963
Carg15051	Watermelon (Charleston Gray)	carwcgB0964
Carg15051	Watermelon (97103) v1	carwmB0991
Carg15051	Watermelon (97103) v2	carwmbB1040