Carg15045 (gene) Silver-seed gourd

NameCarg15045
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_078 : 273389 .. 274902 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATTCTCTCCCACCAAATACAAGAAGGAAAGAGCGAGTGAAAGCTTCGGATGAAATTCGACGACAATCTAAGCTGTTAAACTCGGGGGAGTCGGAGCTGGACGAAGGAAGGACCGCAGAACTGGAGAAGGAGAAGACGAAGGGAATTGGGGTATTGATTTTGGACCAAAGGGTGGGCTCTTTGATTTTGGATTGAGTAAATTGGCTACTGATTTTGGACCAAAGTTTGGGCACTTTGATTTCGGACCAAAAGTTGGGCTCTTTGATATATATATATATCTTTGTATGTATGTATGTATGTATGTATGTATATCAACAAATTTTTGACAGAAGAACTCTTTGTGTGTGAAGTTCATTTAGATTTGGCCTCGAACTTAGCTTTAAAATTATTAGCCTGCCAAACAAGAAAGAAAGGCAGAATGGGGGCCATTTCAATGCACCATATTCGATACGCAATAATCGGCGTCAGAAAGTGAAAAGAGGTTTGGGGTTCTGATTACTTTTAACCTGTGTGTCGTAAAAAGTCTGATCCTTTTTCCTTTCATTTCAAGTTCGTATAAATAATGTTCAAGGAATTCTCTGCTGAATTAGTTCAACCAAAGCGCATGGTTCCCATGTGTCGACTGGATGAAGGCTTGTTTCATCGTCGGATCAATTCAGAGTCATTCAATCTGGGATCATATCAACAACCTTCGCCCTTCACGCAGCCTGCAATGTTCTTTTTGTTAGACAAAGTTGATTTATGACGAAACAATGGACGAAATTTATGTAGCCTTAGCAATACTAATTCTTATACATGAATCAAAATAATATAAATGTTTATACATGAATCAAGAAATCATATATTATAAACCAGAAATAAATACGATTCATGATTCATATATTATAAACGAGAAATAAATACGATTCATGAATAGAATGTAGCACCAAATGATGTATTAATGAACCAAATCAATCTTTCAGTATCTGGTTTGGATGTCTTGACATTACATCATTATAAAGGGTGGCTGACATACAAATTGTGAGTCAGTGCTCTTTTCCGGCTGTCGACCTCAAGGGCCGAACTCTTTTCTATTCTGACGAACAGTCCAAACCTTTTTACTGTTTACTTTTTGGACCAAGCTGCTGGGGTCTCGTCATTATCAACAAACTTCGATTGTTCGGTGGAATTCTCACACCGGCTTGCTCGGTTGTCGTTTGTTGTTATGGTGTCATGTAATATCGAGAGTCAAAGCAGAGATAAGAGGACTAGAAGATTGAAAATTGATTCCTCAAGGAAGTCATTAATAGGCTATTTGTCTGGTGATGAAGCCTGGCTGAGTATCTTGGTTTAAGAAACGGGCAGAACGACTGTCCCCAAGTCCAAAGTTTTGAATTTTCATCCTCAAGAATAAAGAAGCCCGAAACTACGGTGTGTTCTTTAATGGGGGTTCAATTTCTTGTCTTTATAGCTTTACTTGCTTTCTGGGTTCTTACTTGCTTCAGACTATGAAAATTGTAGATAACTGA

mRNA sequence

ATGGAGGATTCTCTCCCACCAAATACAAGAAGGAAAGAGCGAGTGAAAGCTTCGGATGAAATTCGACGACAATCTAAGCTGTTAAACTCGGGGGAGTCGGAGCTGGACGAAGGAAGGACCGCAGAACTGGAGAAGGAGAAGACGAAGGGAATTGGGAAAGAAAGGCAGAATGGGGGCCATTTCAATGCACCATATTCGATACGCAATAATCGGCGTCAGAAAGTGAAAAGAGATAACTGA

Coding sequence (CDS)

ATGGAGGATTCTCTCCCACCAAATACAAGAAGGAAAGAGCGAGTGAAAGCTTCGGATGAAATTCGACGACAATCTAAGCTGTTAAACTCGGGGGAGTCGGAGCTGGACGAAGGAAGGACCGCAGAACTGGAGAAGGAGAAGACGAAGGGAATTGGGAAAGAAAGGCAGAATGGGGGCCATTTCAATGCACCATATTCGATACGCAATAATCGGCGTCAGAAAGTGAAAAGAGATAACTGA

Protein sequence

MEDSLPPNTRRKERVKASDEIRRQSKLLNSGESELDEGRTAELEKEKTKGIGKERQNGGHFNAPYSIRNNRRQKVKRDN
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15045-RACarg15045-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..79

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15045Silver-seed gourdcarcarB494
Carg15045Silver-seed gourdcarcarB503
Carg15045Cucumber (Gy14) v1carcgyB1107
Carg15045Cucumber (Gy14) v2carcgybB0978
Carg15045Cucumber (Gy14) v2carcgybB0974
Carg15045Cucumber (Gy14) v1carcgyB1104
Carg15045Cucurbita maxima (Rimu)carcmaB1364
Carg15045Cucurbita maxima (Rimu)carcmaB1365
Carg15045Cucurbita maxima (Rimu)carcmaB1366
Carg15045Cucurbita maxima (Rimu)carcmaB1368
Carg15045Cucurbita maxima (Rimu)carcmaB1369
Carg15045Cucurbita moschata (Rifu)carcmoB1325
Carg15045Cucurbita moschata (Rifu)carcmoB1326
Carg15045Cucurbita moschata (Rifu)carcmoB1328
Carg15045Cucurbita moschata (Rifu)carcmoB1329
Carg15045Cucurbita pepo (Zucchini)carcpeB1373
Carg15045Cucurbita pepo (Zucchini)carcpeB1375
Carg15045Cucurbita pepo (Zucchini)carcpeB1376
Carg15045Cucurbita pepo (Zucchini)carcpeB1377
Carg15045Wild cucumber (PI 183967)carcpiB1029
Carg15045Wild cucumber (PI 183967)carcpiB1024
Carg15045Cucumber (Chinese Long) v2carcuB1001
Carg15045Cucumber (Chinese Long) v2carcuB1005
Carg15045Cucumber (Chinese Long) v3carcucB1030
Carg15045Cucumber (Chinese Long) v3carcucB1035
Carg15045Bottle gourd (USVL1VR-Ls)carlsiB902
Carg15045Bottle gourd (USVL1VR-Ls)carlsiB904
Carg15045Melon (DHL92) v3.5.1carmeB0962
Carg15045Melon (DHL92) v3.5.1carmeB0966
Carg15045Melon (DHL92) v3.6.1carmedB0970
Carg15045Melon (DHL92) v3.6.1carmedB0976
Carg15045Watermelon (Charleston Gray)carwcgB0963
Carg15045Watermelon (Charleston Gray)carwcgB0964
Carg15045Watermelon (Charleston Gray)carwcgB0965
Carg15045Watermelon (97103) v1carwmB0990
Carg15045Watermelon (97103) v1carwmB0991
Carg15045Watermelon (97103) v2carwmbB1040
Carg15045Watermelon (97103) v2carwmbB1042
Carg15045Wax gourdcarwgoB1157
Carg15045Wax gourdcarwgoB1160