Carg14857 (gene) Silver-seed gourd

Overview
NameCarg14857
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGlutathione s-transferase, putative
LocationCucurbita_argyrosperma_scaffold_079 : 335911 .. 336117 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATGGTTGGACCTCGCCTGGTCACGCAAGAAAGGCTTCCCCTCTTGTCCAAATGGATAGCCGAATTCTCTTCTGCTCCAATCATCAGTGAAAATTGGCCTTCTGTGGACCAAATTCGTCGTCGTTTCTACGAGTCTCATCCACTGCCCCAAACTCAACCCCAAGCTGAGTTTCATGGCTACAATTATGAACATGCATGA

mRNA sequence

ATGGAGGAGATGGTTGGACCTCGCCTGGTCACGCAAGAAAGGCTTCCCCTCTTGTCCAAATGGATAGCCGAATTCTCTTCTGCTCCAATCATCAGTGAAAATTGGCCTTCTGTGGACCAAATTCGTCGTCGTTTCTACGAGTCTCATCCACTGCCCCAAACTCAACCCCAAGCTGAGTTTCATGGCTACAATTATGAACATGCATGA

Coding sequence (CDS)

ATGGAGGAGATGGTTGGACCTCGCCTGGTCACGCAAGAAAGGCTTCCCCTCTTGTCCAAATGGATAGCCGAATTCTCTTCTGCTCCAATCATCAGTGAAAATTGGCCTTCTGTGGACCAAATTCGTCGTCGTTTCTACGAGTCTCATCCACTGCCCCAAACTCAACCCCAAGCTGAGTTTCATGGCTACAATTATGAACATGCATGA

Protein sequence

MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESHPLPQTQPQAEFHGYNYEHA
Homology
[Close]
BLAST of Carg14857 vs. NCBI nr
Match: XP_023526713.1 (probable glutathione S-transferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-30
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESHPLPQTQPQAEF 60
           MEEMVGPRLVTQER PLLSKWIAEFSSAPIISENWPSVDQIRRRFYESHPLPQTQPQAEF
Sbjct: 170 MEEMVGPRLVTQERFPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESHPLPQTQPQAEF 229

Query: 61  HGYNYEHA 69
           H YNYEHA
Sbjct: 230 HDYNYEHA 237

[Close]
BLAST of Carg14857 vs. NCBI nr
Match: XP_022924322.1 (probable glutathione S-transferase [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 1   MEEMVGPR-LVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESHPLPQTQPQAE 60
           MEEMVGPR LVTQER PLLSKWIAEFSSAPII ENWPSVDQIRRRFYESHPLPQTQPQAE
Sbjct: 170 MEEMVGPRLLVTQERFPLLSKWIAEFSSAPIIGENWPSVDQIRRRFYESHPLPQTQPQAE 229

Query: 61  FHGYNYEHA 69
           FHGYNYEHA
Sbjct: 230 FHGYNYEHA 238

[Close]
BLAST of Carg14857 vs. NCBI nr
Match: XP_004133937.1 (PREDICTED: probable glutathione S-transferase [Cucumis sativus] >KGN56630.1 hypothetical protein Csa_3G126940 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRF 46
           MEE+VG  L+T+ER PLLSKW  EF++APII+ENWP  D++  ++
Sbjct: 166 MEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLITKY 210

[Close]
BLAST of Carg14857 vs. NCBI nr
Match: XP_008438211.1 (PREDICTED: probable glutathione S-transferase [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 9.0e-07
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESH 50
           +EE+VG  L+T+ER PLLSKW  EF++APII+ENWP  D++  ++   H
Sbjct: 166 IEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLIAKYQALH 214

[Close]
BLAST of Carg14857 vs. NCBI nr
Match: XP_022146881.1 (probable glutathione S-transferase [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESH 50
           +EE+    L+T++R PLLSKWI EF++APII+ENWP  D++  ++   H
Sbjct: 166 LEEVTETHLITEQRFPLLSKWITEFAAAPIINENWPPRDKLVAKYQALH 214

[Close]
BLAST of Carg14857 vs. TrEMBL
Match: tr|A0A0A0L3V7|A0A0A0L3V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126940 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRF 46
           MEE+VG  L+T+ER PLLSKW  EF++APII+ENWP  D++  ++
Sbjct: 166 MEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLITKY 210

[Close]
BLAST of Carg14857 vs. TrEMBL
Match: tr|A0A1S3AWH4|A0A1S3AWH4_CUCME (probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103483384 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-07
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFYESH 50
           +EE+VG  L+T+ER PLLSKW  EF++APII+ENWP  D++  ++   H
Sbjct: 166 IEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLIAKYQALH 214

[Close]
BLAST of Carg14857 vs. TrEMBL
Match: tr|A0A067LEI1|A0A067LEI1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00296 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 2   EEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRF 46
           EE++G +L+ QE  PLL KWI EF++AP+I +NWPS D++  +F
Sbjct: 168 EEILGFKLIDQENFPLLVKWIQEFANAPVIQDNWPSRDKLVAKF 211

[Close]
BLAST of Carg14857 vs. TrEMBL
Match: tr|A0A2C9V6W4|A0A2C9V6W4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G113500 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-05
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 1   MEEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRF 46
           +EE++G +LV QE+ PLL  WI +FS+ PII ENWP  D++  R+
Sbjct: 167 IEEIIGVKLVDQEKFPLLMAWIQQFSNIPIIHENWPPRDKLLDRY 211

[Close]
BLAST of Carg14857 vs. TrEMBL
Match: tr|A5AP11|A5AP11_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016434 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-05
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2   EEMVGPRLVTQERLPLLSKWIAEFSSAPIISENWPSVDQIRRRFY 47
           EE+VG ++V +++ PLLS+W+ EFS +PII +NWP  D++  +F+
Sbjct: 144 EEVVGLKIVDEDKFPLLSEWMKEFSDSPIIKDNWPPQDKMIAKFH 188

The following BLAST results are available for this feature:
BLAST of Carg14857 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023526713.12.0e-3097.06probable glutathione S-transferase [Cucurbita pepo subsp. pepo][more]
XP_022924322.12.2e-2995.65probable glutathione S-transferase [Cucurbita moschata][more]
XP_004133937.16.9e-0757.78PREDICTED: probable glutathione S-transferase [Cucumis sativus] >KGN56630.1 hypo... [more]
XP_008438211.19.0e-0753.06PREDICTED: probable glutathione S-transferase [Cucumis melo][more]
XP_022146881.14.5e-0648.98probable glutathione S-transferase [Momordica charantia][more]
BLAST of Carg14857 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14857 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14857 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3V7|A0A0A0L3V7_CUCSA4.6e-0757.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126940 PE=3 SV=1[more]
tr|A0A1S3AWH4|A0A1S3AWH4_CUCME6.0e-0753.06probable glutathione S-transferase OS=Cucumis melo OX=3656 GN=LOC103483384 PE=3 ... [more]
tr|A0A067LEI1|A0A067LEI1_JATCU1.1e-0552.27Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00296 PE=3 SV=1[more]
tr|A0A2C9V6W4|A0A2C9V6W4_MANES4.3e-0551.11Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G113500 PE=3 SV=... [more]
tr|A5AP11|A5AP11_VITVI5.6e-0546.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016434 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14857-RACarg14857-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1050.10coord: 1..50
e-value: 1.2E-6
score: 30.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg14857Silver-seed gourdcarcarB261
Carg14857Silver-seed gourdcarcarB549
Carg14857Silver-seed gourdcarcarB550
Carg14857Cucumber (Gy14) v2carcgybB0617
Carg14857Cucumber (Gy14) v2carcgybB0619
Carg14857Cucumber (Gy14) v1carcgyB0693
Carg14857Cucumber (Gy14) v1carcgyB0695
Carg14857Cucurbita maxima (Rimu)carcmaB0874
Carg14857Cucurbita maxima (Rimu)carcmaB0876
Carg14857Cucurbita maxima (Rimu)carcmaB0877
Carg14857Cucurbita maxima (Rimu)carcmaB0880
Carg14857Cucurbita moschata (Rifu)carcmoB0850
Carg14857Cucurbita moschata (Rifu)carcmoB0851
Carg14857Cucurbita moschata (Rifu)carcmoB0852
Carg14857Cucurbita moschata (Rifu)carcmoB0854
Carg14857Cucurbita pepo (Zucchini)carcpeB0881
Carg14857Cucurbita pepo (Zucchini)carcpeB0882
Carg14857Cucurbita pepo (Zucchini)carcpeB0884
Carg14857Cucurbita pepo (Zucchini)carcpeB0885
Carg14857Wild cucumber (PI 183967)carcpiB0651
Carg14857Wild cucumber (PI 183967)carcpiB0653
Carg14857Cucumber (Chinese Long) v2carcuB0644
Carg14857Cucumber (Chinese Long) v2carcuB0645
Carg14857Cucumber (Chinese Long) v3carcucB0652
Carg14857Cucumber (Chinese Long) v3carcucB0654
Carg14857Bottle gourd (USVL1VR-Ls)carlsiB564
Carg14857Bottle gourd (USVL1VR-Ls)carlsiB565
Carg14857Melon (DHL92) v3.5.1carmeB0621
Carg14857Melon (DHL92) v3.5.1carmeB0622
Carg14857Melon (DHL92) v3.6.1carmedB0628
Carg14857Melon (DHL92) v3.6.1carmedB0629
Carg14857Watermelon (Charleston Gray)carwcgB0602
Carg14857Watermelon (Charleston Gray)carwcgB0603
Carg14857Watermelon (97103) v1carwmB0617
Carg14857Watermelon (97103) v1carwmB0619
Carg14857Watermelon (97103) v2carwmbB0647
Carg14857Watermelon (97103) v2carwmbB0648
Carg14857Wax gourdcarwgoB0736
Carg14857Wax gourdcarwgoB0737