Carg14750 (gene) Silver-seed gourd

Overview
NameCarg14750
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 1-like
LocationCucurbita_argyrosperma_scaffold_048 : 841767 .. 842290 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAATAAGTTTGATCAGAACCCGTGTTTCCTTGACACAACAATTTCAACATATTAAACCGGTGGAAAGTCTACACACCGAGGTACCCAATCTTGTCAATGATGGTCTCGTGATGTTATCGGGACTCCAATGTCAAGAATTGCACCCGAGTTGGCATTTAGTACCGGTGGTCGAGTTACCGTGGTCAAAGATTGGCTTTGTGTAGAACTAGAAGGTACGTTTGGGATGGATGAATTCTACTGAATAAGTGTTTACTTCTCTTACTTACAATTGCTTATTGTTTTTGTTTCAATCAGATCCAAGGCCATTGCCTATCACATCTTATGTGCCACTTCTGCTTGGACCCAATTAAATGTACAAATATCTATGCTCCAACCCCTCATTCCATTGTTTTTCTTTCATATCATGTTAGGTTGATGGATCTGTTAGTTTGTACCATGGCTTTTGATTGTCTTTGTGATTTTCCATGTTGGTCGGGGAGGAGAACAAACCACTATTTATAAGGGTGTGGAAACCTTCCCCT

mRNA sequence

GTTTAATAAGTTTGATCAGAACCCGTGTTTCCTTGACACAACAATTTCAACATATTAAACCGGTGGAAAGTCTACACACCGAGGTACCCAATCTTGTCAATGATGGTCTCGTGATGTTATCGGGACTCCAATGTCAAGAATTGCACCCGAGTTGGCATTTAGTACCGGTGGTCGAGTTACCGTGGTCAAAGATTGGCTTTGTGTAGAACTAGAAGATCCAAGGCCATTGCCTATCACATCTTATGTGCCACTTCTGCTTGGACCCAATTAAATGTACAAATATCTATGCTCCAACCCCTCATTCCATTGTTTTTCTTTCATATCATGTTAGGTTGATGGATCTGTTAGTTTGTACCATGGCTTTTGATTGTCTTTGTGATTTTCCATGTTGGTCGGGGAGGAGAACAAACCACTATTTATAAGGGTGTGGAAACCTTCCCCT

Coding sequence (CDS)

ATGTCAAGAATTGCACCCGAGTTGGCATTTAGTACCGGTGGTCGAGTTACCGTGGTCAAAGATTGGCTTTGTGTAGAACTAGAAGATCCAAGGCCATTGCCTATCACATCTTATGTGCCACTTCTGCTTGGACCCAATTAA

Protein sequence

MSRIAPELAFSTGGRVTVVKDWLCVELEDPRPLPITSYVPLLLGPN
Homology
[Close]
BLAST of Carg14750 vs. NCBI nr
Match: XP_016903076.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo] >XP_016903077.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo] >XP_016903078.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo] >XP_016903079.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-08
Identity = 33/62 (53.23%), Postives = 36/62 (58.06%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS IAPE AF TGGRV                   +DWLC+ELEDPRPL   SY+PLLLG
Sbjct: 610 MSSIAPEFAFCTGGRVLDRYRSSLSPDTRQALICAQDWLCIELEDPRPLSTASYIPLLLG 669

[Close]
BLAST of Carg14750 vs. NCBI nr
Match: XP_022136908.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136915.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136922.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-07
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS IAPE+AFSTG RV                   +DWL +ELEDPRPL   SY+PLLLG
Sbjct: 612 MSSIAPEMAFSTGXRVLDPGRSSLSPNTRQALICAQDWLRIELEDPRPLSTASYIPLLLG 671

[Close]
BLAST of Carg14750 vs. NCBI nr
Match: XP_022136900.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-07
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS IAPE+AFSTG RV                   +DWL +ELEDPRPL   SY+PLLLG
Sbjct: 638 MSSIAPEMAFSTGXRVLDPGRSSLSPNTRQALICAQDWLRIELEDPRPLSTASYIPLLLG 697

[Close]
BLAST of Carg14750 vs. NCBI nr
Match: KGN55034.1 (hypothetical protein Csa_4G624400 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS I PE AF T GRV                   +DWLC+ELEDPRPL   SY+PLLL 
Sbjct: 810 MSSIVPEFAFCTTGRVLDRYRSSLSPDTRQALICAQDWLCIELEDPRPLSTASYIPLLLE 869

[Close]
BLAST of Carg14750 vs. NCBI nr
Match: XP_011654029.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis sativus] >XP_011654030.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS I PE AF T GRV                   +DWLC+ELEDPRPL   SY+PLLL 
Sbjct: 612 MSSIVPEFAFCTTGRVLDRYRSSLSPDTRQALICAQDWLCIELEDPRPLSTASYIPLLLE 671

[Close]
BLAST of Carg14750 vs. TrEMBL
Match: tr|A0A1S4E4C0|A0A1S4E4C0_CUCME (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=3656 GN=LOC107992032 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-08
Identity = 33/62 (53.23%), Postives = 36/62 (58.06%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS IAPE AF TGGRV                   +DWLC+ELEDPRPL   SY+PLLLG
Sbjct: 610 MSSIAPEFAFCTGGRVLDRYRSSLSPDTRQALICAQDWLCIELEDPRPLSTASYIPLLLG 669

[Close]
BLAST of Carg14750 vs. TrEMBL
Match: tr|A0A0A0L1Z7|A0A0A0L1Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-06
Identity = 30/62 (48.39%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 1   MSRIAPELAFSTGGRV----------------TVVKDWLCVELEDPRPLPITSYVPLLLG 47
           MS I PE AF T GRV                   +DWLC+ELEDPRPL   SY+PLLL 
Sbjct: 810 MSSIVPEFAFCTTGRVLDRYRSSLSPDTRQALICAQDWLCIELEDPRPLSTASYIPLLLE 869

The following BLAST results are available for this feature:
BLAST of Carg14750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903076.17.2e-0853.23PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis... [more]
XP_022136908.18.0e-0751.61zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordi... [more]
XP_022136900.18.0e-0751.61zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordi... [more]
KGN55034.11.5e-0548.39hypothetical protein Csa_4G624400 [Cucumis sativus][more]
XP_011654029.11.5e-0548.39PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis... [more]
BLAST of Carg14750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E4C0|A0A1S4E4C0_CUCME4.8e-0853.23zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=... [more]
tr|A0A0A0L1Z7|A0A0A0L1Z7_CUCSA9.9e-0648.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14750-RACarg14750-RAmRNA