Carg14607 (gene) Silver-seed gourd

Overview
NameCarg14607
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_181 : 620737 .. 621579 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTTAGAAGTGAAAACCAAGACAGGTAGACTCACTCAACAGTGAAATGATCGGTTAGTCTTAGGCAGGCTAATATGACTCCTGAGATATTGGCAGTAGAAAGACACTCCTGTGGTTTTAATTCAATAGAACATTCATATCTAGTGTCAAAAAGTGCGAGTTTCCATCCAGTTATTATGAGAACTAAAGAAATTTATCCCTATTATGTTTAACTATTTATAATTTTTCCCATTTATTTTAGTGCTTTTAGTAGCAAATGCTTCCTTCATCAAGTGTTAAGAAACTTGATCTATTGTGAAATGCTAATGAACTATCTACGATTCTTCAGTTTTGTAACAATGCATGTTGTCTTCTCTAAAACACTACGATGGTGGTGATATGAATCGTTGGTTTGATGTATTTGTTGGCATCTTTTATTGAATTTCAGACTTTCCAAGAGTTCTGATGCTTGAAGGAAGAGAGGAAGAATGGGCTGTAAAGCTATGTTTAAATGGGCAAAAAAAGTCACACCTTCTCATGTTGAACAGCTAATAAGAGCGGAACGAGACATAAACAAGACACTTCTCATATTTGACTCTGCAACAACCGAGTATACAAATGGTTTTAAGCACGATATCAATACTTTTAGGCTCATGATTAGTCAGATGATTTCTGCCAACCAGTTCAGGTTAGCAGAAACGCTTCTTGACAGGATGAAGGAAGATAATTTTGATGTCACCGAGGATATATTTCTCTATATTTGTCGGGCTTATGGTTGTATCCATAAGCCATTGGATTCCACTAGAGTTTTCCACAAAATGCAGGATTTCCATTGCAAGCGTGTTTGCCATTCTTGTTGA

mRNA sequence

ATGTTCTTTAGAAGTGAAAACCAAGACAGGAAGAGAGGAAGAATGGGCTGTAAAGCTATGTTTAAATGGGCAAAAAAAGTCACACCTTCTCATGTTGAACAGCTAATAAGAGCGGAACGAGACATAAACAAGACACTTCTCATATTTGACTCTGCAACAACCGAGTATACAAATGGTTTTAAGCACGATATCAATACTTTTAGGCTCATGATTAGTCAGATGATTTCTGCCAACCAGTTCAGGTTAGCAGAAACGCTTCTTGACAGGATGAAGGAAGATAATTTTGATGTCACCGAGGATATATTTCTCTATATTTGTCGGGCTTATGGTTGTATCCATAAGCCATTGGATTCCACTAGAGTTTTCCACAAAATGCAGGATTTCCATTGCAAGCGTGTTTGCCATTCTTGTTGA

Coding sequence (CDS)

ATGTTCTTTAGAAGTGAAAACCAAGACAGGAAGAGAGGAAGAATGGGCTGTAAAGCTATGTTTAAATGGGCAAAAAAAGTCACACCTTCTCATGTTGAACAGCTAATAAGAGCGGAACGAGACATAAACAAGACACTTCTCATATTTGACTCTGCAACAACCGAGTATACAAATGGTTTTAAGCACGATATCAATACTTTTAGGCTCATGATTAGTCAGATGATTTCTGCCAACCAGTTCAGGTTAGCAGAAACGCTTCTTGACAGGATGAAGGAAGATAATTTTGATGTCACCGAGGATATATTTCTCTATATTTGTCGGGCTTATGGTTGTATCCATAAGCCATTGGATTCCACTAGAGTTTTCCACAAAATGCAGGATTTCCATTGCAAGCGTGTTTGCCATTCTTGTTGA

Protein sequence

MFFRSENQDRKRGRMGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCKRVCHSC
Homology
[Close]
BLAST of Carg14607 vs. NCBI nr
Match: XP_022139830.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia] >XP_022139831.1 pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 6.4e-52
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 10  RKRGRMGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRL 69
           RKRG MG KAMFKWAK VTPSHVEQLI+AERDINK LLIFDSAT+EY NGFKHD+NTFRL
Sbjct: 15  RKRGTMGSKAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRL 74

Query: 70  MISQMISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFH 129
           MIS+++SANQFR AETLLDRM E+ FDVTEDIFL ICRAYG +HKPLDS R+FHKM+DF 
Sbjct: 75  MISKLVSANQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQ 134

Query: 130 CK 132
           CK
Sbjct: 135 CK 136

[Close]
BLAST of Carg14607 vs. NCBI nr
Match: XP_023519166.1 (pentatricopeptide repeat-containing protein At5g46100 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 6.4e-52
Identity = 100/117 (85.47%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKWAK VTP+HVEQLI+AERDINK LLIFDSAT EYTNGFKHD+NTFRLMI ++
Sbjct: 1   MGSKAMFKWAKTVTPAHVEQLIQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +SANQFRLAETLLDRMKE+ FDVTEDIFL ICRAYG IH+PLDS RVFHKMQDFHCK
Sbjct: 61  VSANQFRLAETLLDRMKEEKFDVTEDIFLSICRAYGRIHRPLDSIRVFHKMQDFHCK 117

[Close]
BLAST of Carg14607 vs. NCBI nr
Match: XP_022927208.1 (pentatricopeptide repeat-containing protein At5g46100 [Cucurbita moschata])

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 98/117 (83.76%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKWAK VTP+HVEQL++AERDINK LLIFDSAT EYTNGFKHD+NTFRLMI ++
Sbjct: 1   MGSKAMFKWAKTVTPAHVEQLVQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +SANQFRLAETLLDRMKE+ FDVTEDIFL ICRAYG +H+PLDS RVFHKMQDFHCK
Sbjct: 61  VSANQFRLAETLLDRMKEEKFDVTEDIFLSICRAYGRVHRPLDSIRVFHKMQDFHCK 117

[Close]
BLAST of Carg14607 vs. NCBI nr
Match: XP_023001715.1 (pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 3.2e-51
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKWAK VTP+HVEQLI+AERDINK LLIFDSAT EYTNGFKHD+NTFRLMI ++
Sbjct: 1   MGSKAMFKWAKTVTPAHVEQLIQAERDINKALLIFDSATAEYTNGFKHDLNTFRLMIRKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +SANQFRLAETLLDRMKE+  DVTEDIFL ICRAYG IH+PLDS RVFHKMQDFHCK
Sbjct: 61  VSANQFRLAETLLDRMKEEKLDVTEDIFLSICRAYGRIHRPLDSIRVFHKMQDFHCK 117

[Close]
BLAST of Carg14607 vs. NCBI nr
Match: XP_022139832.1 (pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia] >XP_022139834.1 pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 6.0e-50
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKWAK VTPSHVEQLI+AERDINK LLIFDSAT+EY NGFKHD+NTFRLMIS++
Sbjct: 1   MGSKAMFKWAKTVTPSHVEQLIQAERDINKALLIFDSATSEYANGFKHDLNTFRLMISKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +SANQFR AETLLDRM E+ FDVTEDIFL ICRAYG +HKPLDS R+FHKM+DF CK
Sbjct: 61  VSANQFRSAETLLDRMNEEKFDVTEDIFLTICRAYGRVHKPLDSIRIFHKMEDFQCK 117

[Close]
BLAST of Carg14607 vs. TAIR10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 65/117 (55.56%), Postives = 89/117 (76.07%), Query Frame = 0 

Query: 15  MGCKA-MFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQ 74
           MG K  MFKW+K +TPS V +L+RAE+D+ K++ +FDSAT EY NG+ HD ++F  M+ +
Sbjct: 1   MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60

Query: 75  MISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHC 131
           ++SAN+F+ AE L+ RMK +N  V+EDI L ICR YG +H+P DS RVFHKM+DF C
Sbjct: 61  LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDC 117

[Close]
BLAST of Carg14607 vs. TAIR10
Match: AT5G64320.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 9.9e-07
Identity = 24/104 (23.08%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 26  KVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQFRLAET 85
           K+TP  + +L+    +++ ++ +F  + T   NG++H  + ++++I ++ +  +F+  + 
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELF--SWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDR 134

Query: 86  LLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFH 130
           LL +MK++     E +F+ I R Y     P  +TR+  +M++ +
Sbjct: 135 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176

[Close]
BLAST of Carg14607 vs. TAIR10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 60  FKHDINTFRLMISQMISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDST 119
           FK   +T   MI    ++  F   E LL R++ +N  + E  F+ + RAYG  H P  + 
Sbjct: 73  FKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAV 132

Query: 120 RVFHKMQD-FHCKR 133
            +FH+M D F CKR
Sbjct: 133 DLFHRMVDEFRCKR 146

[Close]
BLAST of Carg14607 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 26/118 (22.03%), Postives = 55/118 (46.61%), Query Frame = 0 

Query: 20  MFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQ 79
           M  + K ++P HV +L+++E++      +FDSAT     G+ H    +  ++ ++     
Sbjct: 1   MVVFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRH--PGYAHSAVVYHHILRRLSETRM 60

Query: 80  FRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQD-FHCKRVCHS 137
                 +++ ++       ED+ L + + YG    P  +  VF +M++ F C+    S
Sbjct: 61  VNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRS 116

[Close]
BLAST of Carg14607 vs. TAIR10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 29/110 (26.36%), Postives = 52/110 (47.27%), Query Frame = 0 

Query: 28  TPSHVE-------QLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQF 87
           +P+H E       + +R E  +   L  F S     +N FKH   TF +MI ++    Q 
Sbjct: 35  SPNHAEIKELDVVKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQV 94

Query: 88  RLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHC 131
              + LL +MK   F  +ED+F+ +   Y  +     +  +F+++++F C
Sbjct: 95  DSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGC 142

[Close]
BLAST of Carg14607 vs. Swiss-Prot
Match: sp|Q9FNL2|PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-33
Identity = 65/117 (55.56%), Postives = 89/117 (76.07%), Query Frame = 0 

Query: 15  MGCKA-MFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQ 74
           MG K  MFKW+K +TPS V +L+RAE+D+ K++ +FDSAT EY NG+ HD ++F  M+ +
Sbjct: 1   MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60

Query: 75  MISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHC 131
           ++SAN+F+ AE L+ RMK +N  V+EDI L ICR YG +H+P DS RVFHKM+DF C
Sbjct: 61  LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDC 117

[Close]
BLAST of Carg14607 vs. Swiss-Prot
Match: sp|Q9FMF6|PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 24/104 (23.08%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 26  KVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQFRLAET 85
           K+TP  + +L+    +++ ++ +F  + T   NG++H  + ++++I ++ +  +F+  + 
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELF--SWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDR 134

Query: 86  LLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFH 130
           LL +MK++     E +F+ I R Y     P  +TR+  +M++ +
Sbjct: 135 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176

[Close]
BLAST of Carg14607 vs. Swiss-Prot
Match: sp|O49436|PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 60  FKHDINTFRLMISQMISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDST 119
           FK   +T   MI    ++  F   E LL R++ +N  + E  F+ + RAYG  H P  + 
Sbjct: 73  FKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAV 132

Query: 120 RVFHKMQD-FHCKR 133
            +FH+M D F CKR
Sbjct: 133 DLFHRMVDEFRCKR 146

[Close]
BLAST of Carg14607 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 26/118 (22.03%), Postives = 55/118 (46.61%), Query Frame = 0 

Query: 20  MFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQ 79
           M  + K ++P HV +L+++E++      +FDSAT     G+ H    +  ++ ++     
Sbjct: 1   MVVFPKSLSPKHVLKLLKSEKNPRAAFALFDSATRH--PGYAHSAVVYHHILRRLSETRM 60

Query: 80  FRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQD-FHCKRVCHS 137
                 +++ ++       ED+ L + + YG    P  +  VF +M++ F C+    S
Sbjct: 61  VNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRS 116

[Close]
BLAST of Carg14607 vs. Swiss-Prot
Match: sp|Q9M302|PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.6e-04
Identity = 29/110 (26.36%), Postives = 52/110 (47.27%), Query Frame = 0 

Query: 28  TPSHVE-------QLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQMISANQF 87
           +P+H E       + +R E  +   L  F S     +N FKH   TF +MI ++    Q 
Sbjct: 35  SPNHAEIKELDVVKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQV 94

Query: 88  RLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHC 131
              + LL +MK   F  +ED+F+ +   Y  +     +  +F+++++F C
Sbjct: 95  DSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGC 142

[Close]
BLAST of Carg14607 vs. TrEMBL
Match: tr|A0A0A0LRZ4|A0A0A0LRZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075590 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.7e-50
Identity = 99/128 (77.34%), Postives = 108/128 (84.38%), Query Frame = 0 

Query: 4   RSENQDRKRGRMGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHD 63
           R  +   KR  MG KAMFKWAK VTP+HV+QLI+AERDI K L+IFDSAT EY NGFKHD
Sbjct: 97  RQSDSLNKRRTMGSKAMFKWAKTVTPTHVQQLIQAERDIKKALIIFDSATAEYANGFKHD 156

Query: 64  INTFRLMISQMISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFH 123
           +NTF LMIS++ISANQFRLAETLLDRMKE+  DVTEDI L ICRAYG IHKPLDS RVFH
Sbjct: 157 LNTFSLMISKLISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFH 216

Query: 124 KMQDFHCK 132
           KMQDFHCK
Sbjct: 217 KMQDFHCK 224

[Close]
BLAST of Carg14607 vs. TrEMBL
Match: tr|A0A1S3B6P2|A0A1S3B6P2_CUCME (pentatricopeptide repeat-containing protein At5g46100 OS=Cucumis melo OX=3656 GN=LOC103486611 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-48
Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKWAK VTP+HV+QLI+AERDI K L+IFDSAT EY NGFKHDINTF LMIS++
Sbjct: 1   MGSKAMFKWAKTVTPAHVQQLIQAERDIKKALIIFDSATAEYANGFKHDINTFSLMISKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           ISANQFRLAE LLDRMKE+  DVTEDI L ICRAYG IHKPLDS RVFHKM DFHCK
Sbjct: 61  ISANQFRLAEALLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMPDFHCK 117

[Close]
BLAST of Carg14607 vs. TrEMBL
Match: tr|A0A2P4LM37|A0A2P4LM37_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_44666 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.0e-42
Identity = 84/117 (71.79%), Postives = 100/117 (85.47%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG KAMFKW+K++TPS VEQLIRAERD+ K +LIFDSAT EY NGF+HD NTF LMIS++
Sbjct: 1   MGSKAMFKWSKQITPSLVEQLIRAERDVQKAVLIFDSATAEYANGFQHDHNTFGLMISKL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           IS+NQFR AE LL+RMKE+  ++TEDIFL ICRAYG +H+PLD+ RVFHKM DF CK
Sbjct: 61  ISSNQFRSAEELLNRMKEEKCNITEDIFLSICRAYGRVHRPLDAVRVFHKMDDFQCK 117

[Close]
BLAST of Carg14607 vs. TrEMBL
Match: tr|A0A2P5D1P8|A0A2P5D1P8_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_103990 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-42
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG + +FKW+K +TPS VEQLIRAE+D+ K +LIFDSAT EYTNGF+HD NTF LMIS++
Sbjct: 1   MGSRTLFKWSKNITPSQVEQLIRAEKDVQKAILIFDSATAEYTNGFRHDHNTFGLMISRL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +SANQFR AE LL RMKE+  DV EDIFL ICRAYG +H+PLD+ RVFHKM+DF CK
Sbjct: 61  VSANQFRSAEALLGRMKEEKCDVKEDIFLSICRAYGRVHRPLDAIRVFHKMEDFQCK 117

[Close]
BLAST of Carg14607 vs. TrEMBL
Match: tr|A0A2P5FI46|A0A2P5FI46_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_066700 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 80/117 (68.38%), Postives = 97/117 (82.91%), Query Frame = 0 

Query: 15  MGCKAMFKWAKKVTPSHVEQLIRAERDINKTLLIFDSATTEYTNGFKHDINTFRLMISQM 74
           MG + +FKW+K +TPS VEQLIRAE+D+ K +LIFDSAT EYTNGF+HD NTF LMIS++
Sbjct: 1   MGSRTLFKWSKNITPSQVEQLIRAEKDVQKAILIFDSATAEYTNGFRHDHNTFGLMISRL 60

Query: 75  ISANQFRLAETLLDRMKEDNFDVTEDIFLYICRAYGCIHKPLDSTRVFHKMQDFHCK 132
           +S NQFR AE LL RMKE+  DV EDIFL ICRAYG +H+PLD+ RVFHK++DF CK
Sbjct: 61  VSGNQFRSAEALLGRMKEEKCDVKEDIFLSICRAYGRVHRPLDAIRVFHKLEDFQCK 117

The following BLAST results are available for this feature:
BLAST of Carg14607 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022139830.16.4e-5281.97pentatricopeptide repeat-containing protein At5g46100 isoform X1 [Momordica char... [more]
XP_023519166.16.4e-5285.47pentatricopeptide repeat-containing protein At5g46100 [Cucurbita pepo subsp. pep... [more]
XP_022927208.11.1e-5183.76pentatricopeptide repeat-containing protein At5g46100 [Cucurbita moschata][more]
XP_023001715.13.2e-5184.62pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima][more]
XP_022139832.16.0e-5082.05pentatricopeptide repeat-containing protein At5g46100 isoform X2 [Momordica char... [more]
BLAST of Carg14607 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46100.11.1e-3455.56Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G64320.19.9e-0723.08Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G20090.13.8e-0636.49Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G09060.11.1e-0522.03Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G48810.11.4e-0526.36Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg14607 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FNL2|PP418_ARATH2.0e-3355.56Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
sp|Q9FMF6|PP444_ARATH1.8e-0523.08Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
sp|O49436|PP327_ARATH6.8e-0536.49Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX... [more]
sp|Q9SS81|PP221_ARATH2.0e-0422.03Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX... [more]
sp|Q9M302|PP270_ARATH2.6e-0426.36Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg14607 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRZ4|A0A0A0LRZ4_CUCSA6.7e-5077.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075590 PE=4 SV=1[more]
tr|A0A1S3B6P2|A0A1S3B6P2_CUCME3.7e-4881.20pentatricopeptide repeat-containing protein At5g46100 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P4LM37|A0A2P4LM37_QUESU1.0e-4271.79Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_4... [more]
tr|A0A2P5D1P8|A0A2P5D1P8_PARAD1.8e-4270.09Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2P5FI46|A0A2P5FI46_9ROSA1.1e-4168.38Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14607-RACarg14607-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 9..137
e-value: 3.3E-9
score: 38.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 66..97
e-value: 0.0022
score: 16.1
NoneNo IPR availablePANTHERPTHR24015:SF383SUBFAMILY NOT NAMEDcoord: 16..129
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 16..129

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14607Cla019695Watermelon (97103) v1carwmB0141
Carg14607Csa1G075590Cucumber (Chinese Long) v2carcuB0163
Carg14607ClCG03G008000Watermelon (Charleston Gray)carwcgB0144
Carg14607CSPI01G12390Wild cucumber (PI 183967)carcpiB0169
Carg14607Cucsa.126940Cucumber (Gy14) v1carcgyB0182
Carg14607CmaCh18G003910Cucurbita maxima (Rimu)carcmaB0198
Carg14607CmaCh13G006240Cucurbita maxima (Rimu)carcmaB0196
Carg14607CmoCh18G003720Cucurbita moschata (Rifu)carcmoB0204
Carg14607CmoCh13G006460Cucurbita moschata (Rifu)carcmoB0202
Carg14607Lsi02G007800Bottle gourd (USVL1VR-Ls)carlsiB135
Carg14607Cp4.1LG20g04520Cucurbita pepo (Zucchini)carcpeB0215
Carg14607Cp4.1LG09g08250Cucurbita pepo (Zucchini)carcpeB0211
Carg14607CsGy1G012420Cucumber (Gy14) v2carcgybB0161
Carg14607MELO3C035724.2Melon (DHL92) v3.6.1carmedB0153
Carg14607CsaV3_1G012580Cucumber (Chinese Long) v3carcucB0170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg14607Silver-seed gourdcarcarB174
Carg14607Silver-seed gourdcarcarB175
Carg14607Silver-seed gourdcarcarB179
Carg14607Cucumber (Gy14) v2carcgybB0165
Carg14607Cucumber (Gy14) v1carcgyB0180
Carg14607Cucurbita maxima (Rimu)carcmaB0199
Carg14607Cucurbita maxima (Rimu)carcmaB0201
Carg14607Cucurbita moschata (Rifu)carcmoB0206
Carg14607Cucurbita moschata (Rifu)carcmoB0209
Carg14607Cucurbita pepo (Zucchini)carcpeB0212
Carg14607Cucurbita pepo (Zucchini)carcpeB0214
Carg14607Wild cucumber (PI 183967)carcpiB0174
Carg14607Cucumber (Chinese Long) v2carcuB0168
Carg14607Cucumber (Chinese Long) v3carcucB0174
Carg14607Bottle gourd (USVL1VR-Ls)carlsiB132
Carg14607Melon (DHL92) v3.5.1carmeB0150
Carg14607Melon (DHL92) v3.5.1carmeB0153
Carg14607Melon (DHL92) v3.6.1carmedB0156
Carg14607Watermelon (Charleston Gray)carwcgB0143
Carg14607Watermelon (97103) v1carwmB0143
Carg14607Watermelon (97103) v2carwmbB0153
Carg14607Watermelon (97103) v2carwmbB0156
Carg14607Wax gourdcarwgoB0189
Carg14607Wax gourdcarwgoB0192