Carg14259 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14259
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Location	Cucurbita_argyrosperma_scaffold_045 : 908156 .. 908449 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGTAAGTTCTTCCCCCTTCTCAATCACTTCCCTCTTCATATTTCTACTCGTAATGTAAAATTTTGCTTGGGTGTTGAAGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA

mRNA sequence

ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA

Coding sequence (CDS)

ATGGCGGGATTTTTGGCAACTATTCGGCGCCTGTACCTCTCCATCTACAATTGGACTCTCTTCGTCGGATGGGTTCAGGTGTTCTACTTCTCAGTCAAGCAATTGAAGGAATCTGGTCACCAACAGGTATATAATGCCGTCGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGA

Protein sequence

MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVLEVFPDRFWFMS

Homology

[Close]

BLAST of Carg14259 vs. NCBI nr
Match: XP_022942204.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL
Sbjct: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL
Sbjct: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. NCBI nr
Match: XP_022975564.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cucurbita maxima])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL
Sbjct: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. NCBI nr
Match: XP_008452179.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+T+RRLYL+IYNWTLF GWVQVFYF +KQLKESGHQQVYNAVERPLQF+QTAAVL
Sbjct: 1  MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFCIKQLKESGHQQVYNAVERPLQFSQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. NCBI nr
Match: XP_004133747.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus] >KGN56303.1 hypothetical protein Csa_3G114430 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 52/62 (83.87%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+T+RRLYL++YNWTLF GWVQVFYF +KQLKESGHQ VYNAVERPLQF+QTAAVL
Sbjct: 1  MAGFLSTLRRLYLTLYNWTLFFGWVQVFYFCIKQLKESGHQHVYNAVERPLQFSQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. TAIR10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-18
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+ +RR+YL++YNW +F GW QV Y ++  LKE+G++ VY+A+E+PLQ AQTAAVL
Sbjct: 1  MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. Swiss-Prot
Match: sp|Q8VZB2|HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-17
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+ +RR+YL++YNW +F GW QV Y ++  LKE+G++ VY+A+E+PLQ AQTAAVL
Sbjct: 1  MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. Swiss-Prot
Match: sp|Q7XSZ4|HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-17
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAG  + +RRLYLS+YNW +F GW QV Y++V  L ESGH+ VY AVERPLQFAQTAA L
Sbjct: 1  MAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. Swiss-Prot
Match: sp|Q5ZEJ0|HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          M G  + +RRLYLS+YNW +F GW QV Y++V  L ESGH+ VY AVERPLQFAQTAA L
Sbjct: 1  MTGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. TrEMBL
Match: tr|A0A1S3BT98|A0A1S3BT98_CUCME (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LOC103493277 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+T+RRLYL+IYNWTLF GWVQVFYF +KQLKESGHQQVYNAVERPLQF+QTAAVL
Sbjct: 1  MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFCIKQLKESGHQQVYNAVERPLQFSQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. TrEMBL
Match: tr|A0A0A0L3F8|A0A0A0L3F8_CUCSA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN=Csa_3G114430 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 52/62 (83.87%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+T+RRLYL++YNWTLF GWVQVFYF +KQLKESGHQ VYNAVERPLQF+QTAAVL
Sbjct: 1  MAGFLSTLRRLYLTLYNWTLFFGWVQVFYFCIKQLKESGHQHVYNAVERPLQFSQTAAVL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. TrEMBL
Match: tr|A0A2I4G7B5|A0A2I4G7B5_9ROSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Juglans regia OX=51240 GN=LOC109005346 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 45/62 (72.58%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+ +RR+YL++YNWT+F GW+QVFY +VK ++ESGH+QVYNAVERPLQFAQTAA+L
Sbjct: 1  MAGFLSLLRRVYLTLYNWTVFFGWLQVFYLAVKTVRESGHEQVYNAVERPLQFAQTAALL 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

[Close]

BLAST of Carg14259 vs. TrEMBL
Match: tr|A0A2P4NAZ1|A0A2P4NAZ1_QUESU (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Quercus suber OX=58331 GN=CFP56_41105 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-19
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+ +RR+YLS+YNWT+FVGW QV Y +VK ++ESGHQ VY+AVERPLQ AQTAA+L
Sbjct: 1  MAGFLSLLRRIYLSVYNWTVFVGWFQVLYLAVKTVRESGHQHVYSAVERPLQLAQTAAIL 60

Query: 61 EVF 64
          E+F
Sbjct: 61 EIF 63

[Close]

BLAST of Carg14259 vs. TrEMBL
Match: tr|A0A2H3XJ06|A0A2H3XJ06_PHODC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Phoenix dactylifera OX=42345 GN=LOC103703452 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.1e-19
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60
          MAGFL+ ++R+YLSIYNWT+FVGWVQV YF++K LKESGH  VY+AVERPLQ AQTAAV+
Sbjct: 1  MAGFLSIVKRIYLSIYNWTVFVGWVQVLYFALKALKESGHTAVYDAVERPLQLAQTAAVM 60

Query: 61 EV 63
          E+
Sbjct: 61 EI 62

The following BLAST results are available for this feature:

BLAST of Carg14259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942204.1	9.0e-26	98.39	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2...	[more]
XP_022942935.1	9.0e-26	98.39	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2...	[more]
XP_022975564.1	9.0e-26	98.39	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X2 [Cuc...	[more]
XP_008452179.1	3.2e-23	87.10	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc...	[more]
XP_004133747.1	2.1e-22	83.87	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc...	[more]

BLAST of Carg14259 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10480.3	1.3e-18	59.68	Protein-tyrosine phosphatase-like, PTPLA	[more]

BLAST of Carg14259 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZB2\|HACD_ARATH	2.4e-17	59.68	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]
sp\|Q7XSZ4\|HACDA_ORYSJ	3.1e-17	66.13	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
sp\|Q5ZEJ0\|HACDB_ORYSJ	8.9e-17	64.52	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]

BLAST of Carg14259 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT98\|A0A1S3BT98_CUCME	2.1e-23	87.10	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0L3F8\|A0A0A0L3F8_CUCSA	1.4e-22	83.87	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN...	[more]
tr\|A0A2I4G7B5\|A0A2I4G7B5_9ROSI	2.4e-19	72.58	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A2P4NAZ1\|A0A2P4NAZ1_QUESU	7.1e-19	71.43	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Quercus suber OX=58331 GN=...	[more]
tr\|A0A2H3XJ06\|A0A2H3XJ06_PHODC	7.1e-19	74.19	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Phoenix dactylifera OX=423...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007482	Tyr_Pase-like_PTPLA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14259-RA	Carg14259-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 8..64
None	No IPR available	PANTHER	PTHR11035:SF3	VERY-LONG-CHAIN 3R -3-HYDROXYACYL-COA DEHYDRATASE HPO-8	coord: 8..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14259	Csa3G114430	Cucumber (Chinese Long) v2	carcuB0955
Carg14259	MELO3C016419	Melon (DHL92) v3.5.1	carmeB0923
Carg14259	ClCG10G007720	Watermelon (Charleston Gray)	carwcgB0914
Carg14259	CSPI03G06730	Wild cucumber (PI 183967)	carcpiB0978
Carg14259	Cucsa.260310	Cucumber (Gy14) v1	carcgyB1061
Carg14259	CmaCh04G008660	Cucurbita maxima (Rimu)	carcmaB1288
Carg14259	CmoCh04G009290	Cucurbita moschata (Rifu)	carcmoB1259
Carg14259	Lsi05G007780	Bottle gourd (USVL1VR-Ls)	carlsiB857
Carg14259	CsGy3G006860	Cucumber (Gy14) v2	carcgybB0928
Carg14259	CsaV3_3G006860	Cucumber (Chinese Long) v3	carcucB0980
Carg14259	Cla97C10G191380	Watermelon (97103) v2	carwmbB0988
Carg14259	Bhi11G000790	Wax gourd	carwgoB1084

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None