Carg14221 (gene) Silver-seed gourd

Overview
NameCarg14221
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_045 : 655827 .. 658079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGGTATGATTCCAAGCCCAAGGCTATGAAATTGAATTCAAGTTTTTGGGGTCGTAGGAAGTAATTGTTGTTTATAAGTTTATTTATTATTTATTATTTATTATTTTTTGTTGGCTGTGAAGATGTGAATTGTAGCTTTAGCTGCTTTAGATGTCACCTCTATTTGTTGGAGCAGGGATTATGTCAGCATTTGACTGCAAGTTCTATTTTGTGATGTTATAGTTTTCAGTATTTGTTTGTCTCTGAATGCTAGTATGCCCAAGTTTCTTACAATAGTATTCCATTTTCTGAACATGCACAGCTTTGCATTTAGATTCATCTAAAAGATCAAGGAAGATGTACTCTTCTCCACTTTTACTTCAATTTCTGCACTAATTAGTCGTAAGGCCCTCATAGTTGAGTTGAGTGGCAGTTTCGAAGCTAGCCAACACATTTGAGGCTGAGGCTGAGGGTATCTTGTTGTTATATGTATTTGTGCACACACTTACCTTCTGGAAAAAATACTGTTGAGATTTTCAAACTAGTCATATTTTATGAGGGATGAAATTTGTTAGATTTCATTTTGTTTTTCAATCATTGGAGTTTTTGAGAATGAGTTTCTAGTTCTGAATTTGTTCTTATAAACATTCCTCTAGGTCATGACGATGAACTATACGAGAGATATATTAGTGTCTGAATCAAATTTTGAGACTGATTTGAGCCTAAGTGTTGAGATATAATATTTGGAAAATATATTATTCTAATTAGTTATAGAATATATCTTAGATATTGTTTATCAGTTAATATTCTTTATTTATGATTTGATTAGTAGTATATTTTATTTTATTCTCAATATTTAATTAATTTATATTTCCTTATCGGGAGGTATTAGTTGGTAGCTTGGATTCTATTGAAACATTATGAATATCAATGAGAATACACACCTTCAATTACAATTCTATTTCTCATTATTAACATGGTATCAGAACACCGATCTTGGGATTCTTAAATATCAAAATTTGCTAGGGTTTGGTAAGCCAAACTCTAACTCAATCAGTAAAGCCATTAAAAATGAGAAATAGAATTGGGATCGAATGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTTTGATGGATATTCATAACATTTAAATAAGGTGGGTATTTTAATGGATATTCATAACATTTAAATAGGATACATGGGATCAAAGGTGGGTATTATGATGGATATTCATAACATTTAAATAGAATACAAGCTACTAACTAGGAAAATATAAACTAATTAAATATTAAGAATAAAATAAAATATACTATTAATCAAATCAGGAAGTTAATAATGAAGTTAAGAATATGAACTGATTACGAATATATAAGATATATTCCATAGCTAATTATTATAATATATTCTCTAAATATTATATCTGACCATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGACTTCTTTGAATTGAAGATCAATGCATAACTGTTTTTTTCCTTGAAAATATCATGCAGAATGGTCCGATTCATGTAAAGTTCATTGTAAACAATTAGGGATGCGTCACACAACCCACTAAGGTAAACCATTGCTTTTACAAAACTCTTATCATTTTATTTACTCGTCAAACTTTAACAAAAATGGTTAATGTTCACTTTTAATGGTTTCAAATTATCCCATATCTCATTGGTTTGATATTATTGCTCATATTTCCTTTGTTATGGAGAAGATTTTGATTCATAACTATGTTGTGAAAATTCAGATGGTAATGGAGGACTGATAGAGATAATAAAGTTTGATGTCAAGGAATCCAACTCTGGTTGCTACTTTCAATACTAAACTAATACTAAACTAGAATGAAGGTTAAAGTTGAAAGGAGTTCATGAGAAAGGAATTAAATTACATTTTCTGTTTTATGACTGTTTTAGGTAGTTAGGAATGTTCTTTATTTTATTTTTAATTAAAGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

mRNA sequence

ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

Coding sequence (CDS)

ATGTTGGCAGAAGAGAGGAGGACGACGAACTCTTATATCATTGAGATTGGTTCCGATAACAGAGAGGGGAAGAACAAAGCAGTTGCTCATGATGGAGTGATTGCTCAGGAGAAAGAAAATCAGTTGGTCCTGTCATTGAGGCCGGTGGGATTTTCGCATCTGCTAAGAATACTGCTTTCATTGAGATCAAGTGAAAGACGAAGAGGAACACTCCATCTCAAGAGGAACCCAATTGACCTAAAAAGGTGCTCCAATCAAGCAAAATAA

Protein sequence

MLAEERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHLLRILLSLRSSERRRGTLHLKRNPIDLKRCSNQAK
Homology
[Close]
BLAST of Carg14221 vs. NCBI nr
Match: XP_022977832.1 (uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977840.1 uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977847.1 uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 4   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPVGFSHL 55
           EER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR  G  H+
Sbjct: 179 EERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLRLDGTIHV 229

[Close]
BLAST of Carg14221 vs. NCBI nr
Match: XP_022977821.1 (uncharacterized protein LOC111478006 isoform X1 [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 4   EERRTTNSYIIEIGSDNREGKNKAVAHDGVIAQEKENQLVLSLRPV 50
           EER+TTNS +IEIG+DN EGKN+ VA D VIA  KE Q VLSLR V
Sbjct: 179 EERKTTNSDVIEIGADNGEGKNETVALDEVIAWAKEKQFVLSLRLV 224

The following BLAST results are available for this feature:
BLAST of Carg14221 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022977832.13.4e-0664.71uncharacterized protein LOC111478006 isoform X2 [Cucurbita maxima] >XP_022977840... [more]
XP_022977821.19.9e-0669.57uncharacterized protein LOC111478006 isoform X1 [Cucurbita maxima][more]
BLAST of Carg14221 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14221 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14221 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14221-RACarg14221-RAmRNA