Carg14046 (gene) Silver-seed gourd

Overview
NameCarg14046
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsmall nuclear ribonucleoprotein E-like
LocationCucurbita_argyrosperma_scaffold_097 : 559406 .. 564646 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTGGAAGTCTAACAGGCAAGGTCCTCTCACCTCCTAACCAATTTTGATAGCCATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGTACGTATTGAATCTATTCATCTCCCTTCCTTTGTTGCTTTTACTTGGGGCTGACTTTAAACTATTTCTGTGCTTTACTGATGGGTTCTGTATCTTTGTCTTTTCCCTCTCGATCCCGGTGCTTCTTTGGAACTAGAACTTGATATTCAGGTTTCTTCAAAGTGTAAGAAGTTACTCATCCATTCTTTTTTAAAAAAGCCATCGCACCTGGCTTTTCTGGTTTAATTTGGTCTTCTAATTCGAGTTTCAAATAAATGCAGAAAGCTCGCATTCAGATTTGGCTGTTTGAGCAAAAAGACCTTAGGATCGAGGGCCGAATTATTGTAAGGTTTTACTTTTTGCTGGTTTACTATTCTTTTTTTCTATATTGGCAATTAATGTAATATGAATTGAAAGCCTCTGTTTCCGTATATGTTGATCTCTTGTTGATAGTTTAATGGGTTTACTGCATTCTACTTTTCTTGTTGGCCTATGTTCATGATTTATAGATGCTCCAAATTCATAGTTGGATGTAATTTACTCTCCCACATGCTTCTTACAGAAATCCTGTGATTTTAGTGGAGAACAGGACATGAATGTGTTAAAAAGTTCTTAGATGTTTTGTGTGGTAACTCAAGCTAGTTGAATCTAAGGACTCTCATAAACGTTTTGGATATGCAAACTCCTAGTTTACACTCCAAAATCGAGTTGATTTCATTTCAAATGATTTGAGAATCAAATCACTACACAAGCAAGATCCATCAAGTCAAACTTGGATAATTCCAAGCATGTAGCCTAAACTACGTTGAATTTCAAAGAAACTTAGCTCTTAACTAAAAGAAACAATATTTTTCAAGTCTACTTTACAAAGACAACATACATGACTTTATATAACCTCAAAATCAAAATGAACTCTTGACCTTCCATGAGGTATTTCAAGAGTTGTAACCTTCATACTCTATGACATAATTAGCCACTATGTAAATGTAACCTTAAAGTAAATAAAAGTCTTAACATATATTAACGAAACACCGTTAACTCTATATTTTTGTTCACCCAAAATTTGTAACCATCTAAGAATAAACGAGGTTCTTCTTTCTTGAAGTTCATATTATATGATTGAGATGTGTTGGTTTATATCATCCTGACGAAGGACCTCAAGCTCCTACTCCACATTGTGAATCTGGGCAAAGTTTCTAGAGTTCAAACAAATTTGGTTGTGTAGGCGGTTTATTTGTTACTAGTTGAATTTGAACCTAATCCATGCCTCAAAATAAATTTGCATGACTTCAAGATTGTGCTTCAGTATTTTGATTGCATTTTACACTGCCATCGAGAGTTATGCAGGAAATTGGGCAAAATCTTGGACACAGCTTGAAATTGCTGCTTATGTGGCTATCACGCAGACTTGCTCTAGGAATGGGAATGGACCATAGTGTTATCATTTCTCCCCCCCCCCCCCAAAAGAAAACCTCATTTCTTTGGGCACATAGATCATTGAATTTAAAGGGGAAAAAAAATAATTTCTTTGTTCAGATAGTGAATGTTTTTTTGCCTCTCAGTTTTAGATAGATCGAGTCTCTAATGAAAATATTTTTATGGTTAGAATGGTCCTTCAAGAGTTTGTATGGTATCAGCCTTACAATGGACGTGTTTAACTCAACAAAAGACAGCAAACAGCAAATACCCAAAAGAAAAAACTATTCTATTTATTAATTTCAGAAAACCTCACAAAACAGCCAAATTGGCAAAAACATTCAGCATAAAGGAAAATGTAAGCAGGCCGCCAGCTTATCTGAAATTTCCTGTTTCATCCTTCCTAGAATAAGTTTTCACAATGGAGGCATCGCATAGTCTTCATTTTTTGTTGAGCTTTGGTAGTTGAAATTTATGGTAATCATGGGTAGTGCATCTCTTTCCTCCAAAACTTAGCCAGTGCATGATGTAGTAGTTGTCTTCATCTTGTAATGTAATAAGTTAGAGGTGTGGGACATAGAGTTATATCTCAGTATTCTGTCCAATTGATCAAACTCTCTGATCGGAACTCTGTTTTCCCTGAAACCTCAAATAATTCTGAGCGCAATGGTCAATTACCTCTGTGATCTGCAGTATTCTGTATGAAATTGTTTCATCTTCTGTTGCTGGAGCAAATCTTGAATAGTACTTTTCTTAAGACATAGCCCCTTGCCTGGGAATTGATTTCCATCTGTCGACACCTACATGAAGTTAGTTTATTCTCCTGTTATTCTATTACTCAATTAAGCTTGATTCCTATCTATTTTGTGCGGGATTATCCTCATCAATTTATGAAATATTGTGACTTGTGCATCCTAAAACTTTTCCTACCACCAGGGGTTGAACGTTGTATTCAGAATTCAGTCAGCAAGTATTTTGGGTTCATTATTCCTCATGTGAACTAAGTGAATTTAGTCTTAGCGTCTTGACTTTTGATATGTTGAATTTGAATGCAGTAGCATATTTCATGTCCTATTCATCTACTTCTTTTCACGATTATTGCGATGTAATTCTTCTGAGATGCTTTTGTGCATCTATTGCTTCTAATTTCTAAGCTAGTAAAAGCTATAGCCATAGAGTTCAAAATGCACTTCGAAAAACATTGGGAGTGGTTCTACTGCTAGTAATCTCTTGTCTGGATCACTTTCTTTTGATATATTTCATTCTCTGGTTCAACAAGCTAACTAGGGAGTAACACTCTGCTGCAAAGATTGTGGTGTAATCTCAGTATCCTGCTTATCTTTTCATTTATTAGATCCATTGCTAGGATTGTCATTTTCATCGCTGAGTAGATATTTCCCTTGGCCTTGGGCTTCACTTTCCTCTCTTTTATAATTTCATACAGTCCATGAAACTGTTCCTTGCCGCAAAGAAATTGTTGTTTGGTCGTCTACTTTTTCCTAGTTTTCTATAATATATAGTTTGTAGTTTTCTCAACTATTAGCTCATATGACTCATTTTCTGTAATATACATGCAGTAATATGTTTATGATTATCTTGTACTAGAAAATTTTAATTTTGTTGTTTCATCGTTTGTTGTAATTACCTATGTTTTGGCTGACTAATTAATGTTATTGTTATAACTTATAAGGGAGGTGCAGTTAGAAGAAGCTGTTTCCTTTATATTGGTGTTATCTTTAAATTGATTATATTTTCTTGATCGTGCAGGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGTATGCCTTCTTCCCCCTCATTTGTTGTTGTCTCCTCTCTAATTCAATGGTTTTCTAAAATGCCTTCTTTGGTTTTTTTCTTTCCCCTTCAGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGTAAGTGAAATTGAACTTGCCCTTCCTCTCCCTTTCTCTTATCCCAGCTAACCTTTTTTTCCCTTCAAATTTCAGGGGAAAATGATGTTCGTCCTGCAGAACACATTATTGAGATAGATTTTCACTTCCATAGTATGGCACTATAGCTTTTACAATTTAGCTTCTGTTCGGAGTTGTATCTTTCTACATTTCAAGCCATCAGTGACTAACTAGTTATTTGGATGTATAACGTTATATTGCTATTGGTAGGTAATGTCGTTTTATGTGCACTCCTTTTAAATGATTGGCCTTAGAATTGGTTGTTTGCACCAACCGAATCCTTGAAACTACGGACTTTAGGTTCCTCAAATTGTAAACTGTTAATGGAACATCGTTTGAGAATTTCCTGTTTATTTCAAGAGGATGTTGGTTACCCTGGATTTGTTTCATTGAACCTCAACTCATGGTCTTCATCCTCGGAGAGAAAAGCGTCACCTTCCTAATCCTGTATAAGATTGATTACCAAGTTATGTTGTGTGATGATGCGTCTAAATATTACCTTTTACAGGATTTGGCTATTTTTAATAATGACCTTCACTCAGACATCGTTGCTTAAGGCAATTGTCTAGGATATGTAATCTTTTGACTTAACATCGGCGCAAGCACTCCAGTAGTACGAGTATTCAAGTTCGTGCAGTTGTCCGGGGTGGTAAACCGCCTACAAAAAGGCCGTAGGCAGCGTCTGGCGTGGGGTGCTAGATCATGCCCTTTTGATAACCTGAGCAGTAAATCTAACGCACTGCTGTTTGTTCTGCTTTTGTCGTTTTTAGATGATGTAGGCAATCTTGGAAGTGGGAAAGCGAAGCGGGTGAAAGACAGCAATCCACTAGTAGCACCGCGGTGGTGGGAGATTGGACTACGAATCGAAAGAGAATTTTGGAGATAACCCAGGTGGCCGGTGGTGGGACATGGAGTCAGGGAATCGCACCCTTCAGGTCATGCAACCCTTGCCCTCTGCTTTCAACTGGAGTATGTAAAAAAGTATGTGTTCCCTTGAGTTGGAAATGAGTGCGCTATCGCATTTGTTCTTTTCATTTTATTGGTGACTGACTCATCCTCCACACATATCATCTCTCTCCCTCTCTCCTTGGTGCAATACGCCACTCCATTCTGTTCTTGTCTTCTTCCCCACCTTGTTTGGTGCCTTCTGTGACACATTCCATAACCCCTGATATCCCTCTCTCTTATGATTGGGAAAATGCATGATTGTTTCAGAGTGGTTGACACAACATGAAAACATCACTATTAATTTATTTTAATCAATCTCAATCTATCATGCATCTCTTGATATTAAATTTGGTTGATCGACTTTCTTGATTTTTGGTTTGACCCCATGTTTTCTTTTAACTCTAGCAGGTCCTTGTCTTGTGGGAATTTGGAGATGGCAATTGTTCATAATACATTGAATAGTATGACTCTGTGGCCCTCCCGATTCTTGGGGAAGCCTGGCTTTTACCGATGCCTTGCCCATGTGAGTTTGGAGTATGCTTTCAGCAAAATGGGGTCTCAAATAGTACACTAGCAGGTAGAAAAGATAAATACCCCCTAAACTTTTGGGCGACATAGCTTTGTTGTGCTGGAACAATATGAGCCGAGGGATATATTGATAGTGAAATTTCAGGAAGCATAGAGGACCGTCACAAAATGGTCTACTCTGCATTCTATTACACTAGGAGTTTGATGCTTAGTTTTTATCTTCATGTGGTGAGAAAGCTAATGTTGTGGCT

mRNA sequence

TCCTGGAAGTCTAACAGGCAAGGTCCTCTCACCTCCTAACCAATTTTGATAGCCATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGCAATCTTGGAAGTGGGAAAGCGAAGCGGGTGAAAGACAGCAATCCACTAGTAGCACCGCGGTGGTGGGAGATTGGACTACGAATCGAAAGAGAATTTTGGAGATAACCCAGGTGGCCGGTGGTGGGACATGGAGTCAGGGAATCGCACCCTTCAGGTCCTTGTCTTGTGGGAATTTGGAGATGGCAATTGTTCATAATACATTGAATAGTATGACTCTGTGGCCCTCCCGATTCTTGGGGAAGCCTGGCTTTTACCGATGCCTTGCCCATGTGAGTTTGGAGTATGCTTTCAGCAAAATGGGGTCTCAAATAGTACACTAGCAGGTAGAAAAGATAAATACCCCCTAAACTTTTGGGCGACATAGCTTTGTTGTGCTGGAACAATATGAGCCGAGGGATATATTGATAGTGAAATTTCAGGAAGCATAGAGGACCGTCACAAAATGGTCTACTCTGCATTCTATTACACTAGGAGTTTGATGCTTAGTTTTTATCTTCATGTGGTGAGAAAGCTAATGTTGTGGCT

Coding sequence (CDS)

ATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGCAATCTTGGAAGTGGGAAAGCGAAGCGGGTGAAAGACAGCAATCCACTAGTAGCACCGCGGTGGTGGGAGATTGGACTACGAATCGAAAGAGAATTTTGGAGATAACCCAGGTGGCCGGTGGTGGGACATGGAGTCAGGGAATCGCACCCTTCAGGTCCTTGTCTTGTGGGAATTTGGAGATGGCAATTGTTCATAATACATTGAATAGTATGACTCTGTGGCCCTCCCGATTCTTGGGGAAGCCTGGCTTTTACCGATGCCTTGCCCATGTGAGTTTGGAGTATGCTTTCAGCAAAATGGGGTCTCAAATAGTACACTAG

Protein sequence

MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWKWESEAGERQQSTSSTAVVGDWTTNRKRILEITQVAGGGTWSQGIAPFRSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH
Homology
[Close]
BLAST of Carg14046 vs. NCBI nr
Match: KHN31189.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 109.8 bits (273), Expect = 9.0e-21
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT 57
          MASTKVQR+MTQPIGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNT
Sbjct: 1  MASTKVQRVMTQPIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNT 56

[Close]
BLAST of Carg14046 vs. NCBI nr
Match: KNA10835.1 (hypothetical protein SOVF_140750 isoform B [Spinacia oleracea])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 52/77 (67.53%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKT 57
          MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVN+KKK++K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKS 60

[Close]
BLAST of Carg14046 vs. NCBI nr
Match: PNS93596.1 (hypothetical protein POPTR_018G096200v3 [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKT 57
          MASTKVQRIMTQP                     IGFDEYMNLVL+DAEEVNIKKKS+K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRKS 60

[Close]
BLAST of Carg14046 vs. NCBI nr
Match: ACJ83970.1 (unknown [Medicago truncatula] >AFK48337.1 unknown [Medicago truncatula])

HSP 1 Score: 93.6 bits (231), Expect = 6.7e-16
Identity = 53/86 (61.63%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP------------------------------IGFDEYMNLVLDDAEEV 57
          MASTKVQR+MTQP                              IGFDEYMNL LDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEV 60

[Close]
BLAST of Carg14046 vs. NCBI nr
Match: XP_018820851.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Juglans regia] >XP_018831159.1 PREDICTED: small nuclear ribonucleoprotein E-like [Juglans regia])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 53/86 (61.63%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP------------------------------IGFDEYMNLVLDDAEEV 57
          MASTKVQRIMTQP                              IGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQRDLRIEGRIIGFDEYMNLVLDDAEEV 60

[Close]
BLAST of Carg14046 vs. TAIR10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 50/86 (58.14%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEV 57
          MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

[Close]
BLAST of Carg14046 vs. TAIR10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 50/85 (58.82%), Postives = 54/85 (63.53%), Query Frame = 0 

Query: 1  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEV 56
          MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

[Close]
BLAST of Carg14046 vs. Swiss-Prot
Match: sp|Q7ZUG0|RUXE_DANRE (Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 14 IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS 59
          IGFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +  +
Sbjct: 48 IGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSVSN 92

[Close]
BLAST of Carg14046 vs. Swiss-Prot
Match: sp|A4FUI2|RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 14 IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS 59
          IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Sbjct: 48 IGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92

[Close]
BLAST of Carg14046 vs. Swiss-Prot
Match: sp|P62303|RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 14 IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS 59
          IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Sbjct: 48 IGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92

[Close]
BLAST of Carg14046 vs. Swiss-Prot
Match: sp|Q9VLV5|RUXE_DROME (Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster OX=7227 GN=SmE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0 

Query: 8  RIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWK 61
          RI    +GFDEYMNLVLDDAEEV +K + ++ LGRI+LKGDNITL+ N    K
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLGRIMLKGDNITLIQNVSPTK 93

[Close]
BLAST of Carg14046 vs. Swiss-Prot
Match: sp|P62304|RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 14 IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS 59
          IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Sbjct: 48 IGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92

[Close]
BLAST of Carg14046 vs. TrEMBL
Match: tr|A0A0K9QUA8|A0A0K9QUA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_140750 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 52/77 (67.53%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKT 57
          MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVN+KKK++K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKS 60

[Close]
BLAST of Carg14046 vs. TrEMBL
Match: tr|A0A2K1WYJ8|A0A2K1WYJ8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G096200v3 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKT 57
          MASTKVQRIMTQP                     IGFDEYMNLVL+DAEEVNIKKKS+K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRKS 60

[Close]
BLAST of Carg14046 vs. TrEMBL
Match: tr|B7FGU1|B7FGU1_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-16
Identity = 53/86 (61.63%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP------------------------------IGFDEYMNLVLDDAEEV 57
          MASTKVQR+MTQP                              IGFDEYMNL LDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEV 60

[Close]
BLAST of Carg14046 vs. TrEMBL
Match: tr|A0A2I4FHM0|A0A2I4FHM0_9ROSI (small nuclear ribonucleoprotein E-like OS=Juglans regia OX=51240 GN=LOC108998876 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.5e-16
Identity = 53/86 (61.63%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP------------------------------IGFDEYMNLVLDDAEEV 57
          MASTKVQRIMTQP                              IGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQRDLRIEGRIIGFDEYMNLVLDDAEEV 60

[Close]
BLAST of Carg14046 vs. TrEMBL
Match: tr|A2YR87|A2YR87_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27814 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-16
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 0 

Query: 1  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKT 57
          MASTKVQRIMTQP                     IGFDEYMNLVLDDAEE+N+KK ++K+
Sbjct: 1  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKS 60

The following BLAST results are available for this feature:
BLAST of Carg14046 vs. NCBI nr
Match NameE-valueIdentityDescription
KHN31189.19.0e-2194.64Small nuclear ribonucleoprotein E [Glycine soja][more]
KNA10835.12.3e-1667.53hypothetical protein SOVF_140750 isoform B [Spinacia oleracea][more]
PNS93596.12.3e-1668.83hypothetical protein POPTR_018G096200v3 [Populus trichocarpa][more]
ACJ83970.16.7e-1661.63unknown [Medicago truncatula] >AFK48337.1 unknown [Medicago truncatula][more]
XP_018820851.11.1e-1561.63PREDICTED: small nuclear ribonucleoprotein E-like [Juglans regia] >XP_018831159.... [more]
BLAST of Carg14046 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.12.5e-1758.14Small nuclear ribonucleoprotein family protein[more]
AT4G30330.12.5e-1758.82Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg14046 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7ZUG0|RUXE_DANRE3.4e-1171.11Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1[more]
sp|A4FUI2|RUXE_BOVIN4.4e-1171.11Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1[more]
sp|P62303|RUXE_CHICK4.4e-1171.11Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=1 SV=1[more]
sp|Q9VLV5|RUXE_DROME4.4e-1162.26Probable small nuclear ribonucleoprotein E OS=Drosophila melanogaster OX=7227 GN... [more]
sp|P62304|RUXE_HUMAN4.4e-1171.11Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1[more]
BLAST of Carg14046 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0K9QUA8|A0A0K9QUA8_SPIOL1.5e-1667.53Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_140750 PE=4 SV=1[more]
tr|A0A2K1WYJ8|A0A2K1WYJ8_POPTR1.5e-1668.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G096200v3 PE=... [more]
tr|B7FGU1|B7FGU1_MEDTR4.4e-1661.63Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
tr|A0A2I4FHM0|A0A2I4FHM0_9ROSI7.5e-1661.63small nuclear ribonucleoprotein E-like OS=Juglans regia OX=51240 GN=LOC108998876... [more]
tr|A2YR87|A2YR87_ORYSI9.8e-1664.94Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27814 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027078snRNP-E
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14046-RACarg14046-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..55
e-value: 0.0012
score: 28.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 15..53
e-value: 3.4E-12
score: 45.8
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..57
e-value: 1.2E-18
score: 68.8
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 14..57
IPR027078Small nuclear ribonucleoprotein ECDDcd01718Sm_Ecoord: 8..55
e-value: 3.00794E-25
score: 92.6168
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 14..55