Carg14042 (gene) Silver-seed gourd

Overview
NameCarg14042
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_097 : 509745 .. 510945 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGTGAGACAAGGAGAGATTGGGTGTCTAGTTTATACAAGGTAAATATATGTTCACATCATTTGAATCACTTTATACTCTTCAATTTTAGAGGATTTTATTTCTTGTCTCTCCTAAACAGTAGCTCTGTATCCTGTTTACTTAAAATCCCGAGTGAAGTATATGTGTTTATGTTATGTATGAATGAAATGGGGAATGCAAAACTTGATGAAGAAAATTGGATGAGGTAAATAAAATAAGGACCAAGTATACTCATTCTCATCTTTTCATTTAGTTGATCAAATTTGGAAATAAGCTATAATTCTCAGAACAGTTGACTAAATAACATGGCCAAGAAAACAGGCTGATGTGTGTGTTGGGTATGGCTCTTTTGAGTTATGTTTGTATTCTTTATTTTAGTTTGGTAACATTTTGTTCTTTCCAGATTTTTTCTTAGCAGTTTAGTGTTGTAGATATTCTACGTTTTGCTATGCATCATCACGTTCAACAAGAGCAACTTGTCTATTTTATTATCTATAGTAATAACATTCAAAAAGTTGGTCGTGGTGTGGGAATTAGTGGTTTGCTTGAAAAATAGTCTCATAAATGGGATAACCGCACTTGGTTGCGAGTAGTTATTTTGTAAGATTTCTTACTGGTTGGGGAGGAGAACAAAACACCGATTTATAAGGGGTGGAAACCTTCCCCTAGCAGACGCGTTTTTACAGCTTTGACGAGAAGTTTCGAAAAGGAAAGCGCAAAGAGGACAATATCTGCTACGGTGAGCCTGGTCGTTACATATGCATCCTGGAATTATCTGGAATACTTTCTGTCATTAAGTAATATTATATGAAACTGCTAACACTAGAGTTATCTTTTTCCAGGGAGGACAGCAACCAAGCGAGGAGGTTGGAACCTATGGGGCTTGGTAAAGTGCCTTCCGATGATGTTCACTTGAATGACTTCACAGAAGTTGAAGGTAAGGATGCTGAAGGATGATGAGCTTGCAGATTCGGAAGGTGAAATGGATTCTAATGTGTTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGGTATGGCCAGGTTTGTTAAATTTGTATTTGTTCTACTTGAACACCAATTAAATATGATATGCACTTTATAAATTTAGAGAATCTCAAATTGA

mRNA sequence

ATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGTGAGACAAGGAGAGATTGGGTGTCTAGTTTATACAAGAAGTTGAAGGTAAGGATGCTGAAGGATGATGAGCTTGCAGATTCGGAAGGTGAAATGGATTCTAATGTGTTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGAGAATCTCAAATTGA

Coding sequence (CDS)

ATGGAGGGCTATTCCTTCTTCGAAGTCAGCCAATCCAGTGAGACAAGGAGAGATTGGGTGTCTAGTTTATACAAGAAGTTGAAGGTAAGGATGCTGAAGGATGATGAGCTTGCAGATTCGGAAGGTGAAATGGATTCTAATGTGTTGTATCGTGCAACTGCTACAACTGGAAGAAAGTTTAGGATGGTTGTGATTGAGATGAGAATCTCAAATTGA

Protein sequence

MEGYSFFEVSQSSETRRDWVSSLYKKLKVRMLKDDELADSEGEMDSNVLYRATATTGRKFRMVVIEMRISN
Homology
[Close]
BLAST of Carg14042 vs. NCBI nr
Match: XP_022957784.1 (protein timeless homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 34   DDELADSEGEMDSNVLYRATATTGRKFRMVVIEMRIS 71
            DDELADSEGE DSNV YRATATTGRKFRMVVIEM ++
Sbjct: 1151 DDELADSEGETDSNV-YRATATTGRKFRMVVIEMEMA 1186

[Close]
BLAST of Carg14042 vs. NCBI nr
Match: XP_022995214.1 (protein timeless homolog [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 25   KKLKVRMLKDDELADSEGEMDSNVLYRATATTGRKFRMVVIE 67
            K  +V +  DDELADSEGEMDSNV +RA+ATTGRKFR+V +E
Sbjct: 1143 KDAEVGVSMDDELADSEGEMDSNV-HRASATTGRKFRIVDLE 1183

[Close]
BLAST of Carg14042 vs. NCBI nr
Match: XP_023533520.1 (protein timeless homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 34   DDELADSEGEMDSNVLYRATATTGRKFRMVVIE 67
            DDELADSEGEMD+NV YRA+ATTGRKFR+V +E
Sbjct: 1148 DDELADSEGEMDTNV-YRASATTGRKFRIVDLE 1179

[Close]
BLAST of Carg14042 vs. NCBI nr
Match: XP_022957786.1 (protein timeless homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 34   DDELADSEGEMDSNVLYRATATTGRKFRMVVIE 67
            DDELADSEGEMDSNV +RA+ATTGRKFR+V +E
Sbjct: 1151 DDELADSEGEMDSNV-HRASATTGRKFRIVDLE 1182

The following BLAST results are available for this feature:
BLAST of Carg14042 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957784.11.2e-0686.49protein timeless homolog isoform X1 [Cucurbita moschata][more]
XP_022995214.12.6e-0469.05protein timeless homolog [Cucurbita maxima][more]
XP_023533520.12.6e-0481.82protein timeless homolog [Cucurbita pepo subsp. pepo][more]
XP_022957786.14.4e-0481.82protein timeless homolog isoform X2 [Cucurbita moschata][more]
BLAST of Carg14042 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14042 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14042 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14042-RACarg14042-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14042Cp4.1LG05g06150Cucurbita pepo (Zucchini)carcpeB0718
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg14042Melon (DHL92) v3.6.1carmedB0515