Carg13894 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13894
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ROTUNDIFOLIA like
Location	Cucurbita_argyrosperma_scaffold_042 : 610407 .. 611769 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCCCTTGGTTCCAGTTCTATAGCGGAGGAGTCTCCGGCAGGTCCTCTGAAAATACGTCTGGGAACTCACTCACTATAGGCAACTCAGTTAGGGGGACGCCTTCTTCCTTGATCCTTGCCACGCTGGCTAGTATCGCCCAGGCCCTGTGCCGAACCAGCTTCTTCGCTTTCATCATCGATATCACCTTGGGCATCGTACCCAGACCGGTGCCCTTGAACCTAAACCTGGTCCTCGACGGTGGTGTGAAAATGACAGGCCTTGTGCCGGACCAGCTTCTTCGCCTTCATCATCGATATCACCTTGGGCATCGTAACCCAGACCGGTGCCCTTGAACTTGAACCTAGTCCTCGACGGTGGTGTGAAAATGACCTCCTGCTAGCATGGTTTTCCACTAACCAGTCCATGCCTAGCACCGTATGAGTTAGGTTAAGTTGTTCGAATTTTTCAAGTCATCAATTTCATAACCCAACTCAAACCTTATTTGTAGCTTTCGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTATTATTTTTTTTTTTAAATTACGACTTAGTCAGTTATTATCTGAATTCAGATAAGATTTAGACTAGGGGGTTGGGTTAGGTCTTTTGAAGGTGCACTCCAACCGCTGACATCCACCATAGGGTAAACCACCACCTCTCAGGTCTACGACTGATTCTACCATAGAGGCTAACGATAGACAATAACTCTCTCCGAACACAGCTACAACTTTTATCGAGCACTATTATATTTAAAAAATATATAAAAAAATCCTCACAAATAAAAGATATCGAGGTAGATTAGTATCAAACCGTGTACATCTCCTTGGAAGAATAGAACAGAAGAAACCCAAGAGAATCACAAGGATCAAGACACAGCTGGCTAAAAACTGATACATTAAAACGCTGCGTTTGATGAAGAGGGAAGCTTCCCAACCAAACCAAGGCCTGTCCTTCCCCGCCCTTTGAAATTCCCAATTCCCCTCGTGCCCCCCCCCCCCTCCCCACGTTCCTTTCAGATCCAAAGAGAATTTCTAAGTTTATTTATTTATTTATTATTGTTATTTATATTTTCGGTGGCGTTTGCGTATAAAAGCGTGGGTGGATTCATATCATAGGTCAAAGGAGTAAAAACATAAAAATGGAATCGGCGAAGAGATCAACAGGGCGGCGACATGGATTTTCACGGCGGTGCGCGGCGTTGGTGAAGGAGCAGCGCGCGCGTGTCTACATACTGCGCCGTTGCGCCACCATGCTTCTTTGTTGGTACATTCACGGAGATGACTGA

mRNA sequence

ATGGTTCTCCCTTGGTTCCAGTTCTATAGCGGAGGAGTCTCCGGCAGGTCCTCTGAAAATACGTCTGGGAACTCACTCACTATAGGCAACTCAGTTAGGGGGACGCCTTCTTCCTTGATCCTTGCCACGCTGGCTAGTATCGCCCAGGCCCTGTGCCGAACCAGCTTCTTCGCTTTCATCATCGATATCACCTTGGGCATCGTACCCAGACCGGTGCCCTTGAACCTAAACCTGGTCCTCGACGGTGGTGTGAAAATGACAGGCCTTGTGCCGGACCAGCTTCTTCGCCTTCATCATCGATATCACCTTGGGCATCGTCAAAGGAGTAAAAACATAAAAATGGAATCGGCGAAGAGATCAACAGGGCGGCGACATGGATTTTCACGGCGGTGCGCGGCGTTGGTGAAGGAGCAGCGCGCGCGTGTCTACATACTGCGCCGTTGCGCCACCATGCTTCTTTGTTGGTACATTCACGGAGATGACTGA

Coding sequence (CDS)

ATGGTTCTCCCTTGGTTCCAGTTCTATAGCGGAGGAGTCTCCGGCAGGTCCTCTGAAAATACGTCTGGGAACTCACTCACTATAGGCAACTCAGTTAGGGGGACGCCTTCTTCCTTGATCCTTGCCACGCTGGCTAGTATCGCCCAGGCCCTGTGCCGAACCAGCTTCTTCGCTTTCATCATCGATATCACCTTGGGCATCGTACCCAGACCGGTGCCCTTGAACCTAAACCTGGTCCTCGACGGTGGTGTGAAAATGACAGGCCTTGTGCCGGACCAGCTTCTTCGCCTTCATCATCGATATCACCTTGGGCATCGTCAAAGGAGTAAAAACATAAAAATGGAATCGGCGAAGAGATCAACAGGGCGGCGACATGGATTTTCACGGCGGTGCGCGGCGTTGGTGAAGGAGCAGCGCGCGCGTGTCTACATACTGCGCCGTTGCGCCACCATGCTTCTTTGTTGGTACATTCACGGAGATGACTGA

Protein sequence

MVLPWFQFYSGGVSGRSSENTSGNSLTIGNSVRGTPSSLILATLASIAQALCRTSFFAFIIDITLGIVPRPVPLNLNLVLDGGVKMTGLVPDQLLRLHHRYHLGHRQRSKNIKMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD

Homology

[Close]

BLAST of Carg13894 vs. NCBI nr
Match: ONI15193.1 (hypothetical protein PRUPE_3G029700 [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 4.4e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 117 AKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           AKRS   RHGFSR+CAALVKEQRAR+YILRRCATMLLCWYI GDD
Sbjct: 22  AKRS---RHGFSRKCAALVKEQRARIYILRRCATMLLCWYIQGDD 63

[Close]

BLAST of Carg13894 vs. NCBI nr
Match: XP_020518826.1 (uncharacterized protein LOC105420131 [Amborella trichopoda])

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           +M++ K     RHG  RRCAALVKEQRAR+YILRRCATMLLCWYIHGDD
Sbjct: 7   EMKALKPPKRSRHGLGRRCAALVKEQRARLYILRRCATMLLCWYIHGDD 55

[Close]

BLAST of Carg13894 vs. NCBI nr
Match: XP_019708842.1 (PREDICTED: uncharacterized protein LOC109506352 [Elaeis guineensis])

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           +M+S  R T    GF RRCA+LVKEQRAR+YILRRCATMLLCWYIHGDD
Sbjct: 5   RMDSIARPTKGGKGFGRRCASLVKEQRARIYILRRCATMLLCWYIHGDD 53

[Close]

BLAST of Carg13894 vs. NCBI nr
Match: XP_012068767.1 (uncharacterized protein LOC105631299 [Jatropha curcas] >KDP40606.1 hypothetical protein JCGZ_24605 [Jatropha curcas])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           K  S++R  G RHGF+ +CA+L+KEQR+R+YILRRCATMLLCWYIHGDD
Sbjct: 18  KPSSSRRRKG-RHGFTTKCASLIKEQRSRIYILRRCATMLLCWYIHGDD 65

[Close]

BLAST of Carg13894 vs. NCBI nr
Match: XP_017648585.1 (PREDICTED: uncharacterized protein LOC108488810 [Gossypium arboreum])

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 118 KRSTGR-RHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           K ST R RHGFS +CA+LVK+QRAR+YILRRCATMLLCWYIHGDD
Sbjct: 14  KASTKRKRHGFSTKCASLVKQQRARLYILRRCATMLLCWYIHGDD 58

[Close]

BLAST of Carg13894 vs. TAIR10
Match: AT3G14362.1 (ROTUNDIFOLIA like 10)

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 114 MESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           M   KR   + H F+ +C +LVKEQRAR+YILRRCATML CWYIHGD+
Sbjct: 1   MAGLKRKFNKGHAFTSKCVSLVKEQRARLYILRRCATMLCCWYIHGDE 48

[Close]

BLAST of Carg13894 vs. TAIR10
Match: AT1G53708.1 (ROTUNDIFOLIA like 9)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-12
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 114 MESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           M   K    + H F+ +CA+LVKEQRAR+YILRRCATML CWYI GDD
Sbjct: 1   MAEFKSKLNKGHAFTSKCASLVKEQRARLYILRRCATMLCCWYIQGDD 48

[Close]

BLAST of Carg13894 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 55.1 bits (131), Expect = 4.7e-08
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 95  LRLHHRYHLGHRQRSKNIKMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLC 154
           L+L  +  LG    + N    S  R    ++GF+R+C  LVKEQRAR YI+RRC  ML+C
Sbjct: 10  LQLSKKESLGDNGGALNTTRSS--RQKQGKYGFTRKCGRLVKEQRARFYIMRRCVVMLIC 69

Query: 155 WYIHGDD 162
           W  H ++
Sbjct: 70  WTDHNNN 74

[Close]

BLAST of Carg13894 vs. TAIR10
Match: AT2G39705.1 (ROTUNDIFOLIA like 8)

HSP 1 Score: 50.8 bits (120), Expect = 8.9e-07
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 108 RSKNIKMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCW 156
           RS +    S       R  F+R+CA LVKEQRAR YI+RRC  ML+CW
Sbjct: 33  RSSSTSSSSFNGKKQGRCAFTRKCARLVKEQRARFYIMRRCVIMLICW 80

[Close]

BLAST of Carg13894 vs. TAIR10
Match: AT4G13395.1 (ROTUNDIFOLIA like 12)

HSP 1 Score: 48.1 bits (113), Expect = 5.8e-06
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 123 RRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIH 159
           R+  F  RC  + K+QR R+YILRRC +MLLCW+ H
Sbjct: 16  RKTRFGDRCLLMAKQQRTRLYILRRCVSMLLCWHDH 51

[Close]

BLAST of Carg13894 vs. TrEMBL
Match: tr|A0A251PUG8|A0A251PUG8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G029700 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.9e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 117 AKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           AKRS   RHGFSR+CAALVKEQRAR+YILRRCATMLLCWYI GDD
Sbjct: 22  AKRS---RHGFSRKCAALVKEQRARIYILRRCATMLLCWYIQGDD 63

[Close]

BLAST of Carg13894 vs. TrEMBL
Match: tr|A0A067KWL7|A0A067KWL7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24605 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           K  S++R  G RHGF+ +CA+L+KEQR+R+YILRRCATMLLCWYIHGDD
Sbjct: 18  KPSSSRRRKG-RHGFTTKCASLIKEQRSRIYILRRCATMLLCWYIHGDD 65

[Close]

BLAST of Carg13894 vs. TrEMBL
Match: tr|A0A2H3ZWM9|A0A2H3ZWM9_PHODC (uncharacterized protein LOC103717792 OS=Phoenix dactylifera OX=42345 GN=LOC103717792 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           +M S  R      GF+RRCA+LVKEQRAR+YILRRCATMLLCWYIHGDD
Sbjct: 5   RMNSMPRPKKAGKGFTRRCASLVKEQRARIYILRRCATMLLCWYIHGDD 53

[Close]

BLAST of Carg13894 vs. TrEMBL
Match: tr|A0A2R6R0L4|A0A2R6R0L4_ACTCH (Glutamine--fructose-6-phosphate aminotransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12868 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 107 QRSKNIKMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           ++ + +K  +   S  + HGF+R+CA+LVKEQRAR+YILRRCAT+LLCWYIHGDD
Sbjct: 3   EQKQQLKSSAYGPSKRKGHGFTRKCASLVKEQRARIYILRRCATVLLCWYIHGDD 57

[Close]

BLAST of Carg13894 vs. TrEMBL
Match: tr|B9GY08|B9GY08_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G073900v3 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 113 KMESAKRSTGRRHGFSRRCAALVKEQRARVYILRRCATMLLCWYIHGDD 162
           K  + +RS G  HGF+ +CAALVKEQRAR+YILRRCATMLLCWYI GDD
Sbjct: 17  KAPATRRSKG--HGFTNKCAALVKEQRARIYILRRCATMLLCWYIQGDD 63

The following BLAST results are available for this feature:

BLAST of Carg13894 vs. NCBI nr


Match Name	E-value	Identity	Description
ONI15193.1	4.4e-12	86.67	hypothetical protein PRUPE_3G029700 [Prunus persica]	[more]
XP_020518826.1	5.8e-12	75.51	uncharacterized protein LOC105420131 [Amborella trichopoda]	[more]
XP_019708842.1	5.8e-12	75.51	PREDICTED: uncharacterized protein LOC109506352 [Elaeis guineensis]	[more]
XP_012068767.1	1.7e-11	71.43	uncharacterized protein LOC105631299 [Jatropha curcas] >KDP40606.1 hypothetical ...	[more]
XP_017648585.1	2.9e-11	82.22	PREDICTED: uncharacterized protein LOC108488810 [Gossypium arboreum]	[more]

BLAST of Carg13894 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14362.1	3.7e-13	64.58	ROTUNDIFOLIA like 10	[more]
AT1G53708.1	1.9e-12	64.58	ROTUNDIFOLIA like 9	[more]
AT3G55515.1	4.7e-08	43.28	ROTUNDIFOLIA like 7	[more]
AT2G39705.1	8.9e-07	52.08	ROTUNDIFOLIA like 8	[more]
AT4G13395.1	5.8e-06	55.56	ROTUNDIFOLIA like 12	[more]

BLAST of Carg13894 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13894 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251PUG8\|A0A251PUG8_PRUPE	2.9e-12	86.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G029700 PE=4 SV=1	[more]
tr\|A0A067KWL7\|A0A067KWL7_JATCU	1.1e-11	71.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24605 PE=4 SV=1	[more]
tr\|A0A2H3ZWM9\|A0A2H3ZWM9_PHODC	1.9e-11	73.47	uncharacterized protein LOC103717792 OS=Phoenix dactylifera OX=42345 GN=LOC10371...	[more]
tr\|A0A2R6R0L4\|A0A2R6R0L4_ACTCH	1.9e-11	61.82	Glutamine--fructose-6-phosphate aminotransferase OS=Actinidia chinensis var. chi...	[more]
tr\|B9GY08\|B9GY08_POPTR	2.5e-11	73.47	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G073900v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13894-RA	Carg13894-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 136..154 e-value: 2.2E-10 score: 40.1
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 110..161
None	No IPR available	PANTHER	PTHR33102:SF14	DVL19-RELATED	coord: 110..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13894	MELO3C024301	Melon (DHL92) v3.5.1	carmeB0604
Carg13894	Cucsa.359710	Cucumber (Gy14) v1	carcgyB0680
Carg13894	MELO3C024301.2	Melon (DHL92) v3.6.1	carmedB0610
Carg13894	CsaV3_7G033880	Cucumber (Chinese Long) v3	carcucB0639
Carg13894	Bhi09G000200	Wax gourd	carwgoB0716

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13894	Silver-seed gourd	carcarB540
Carg13894	Cucumber (Gy14) v2	carcgybB0604
Carg13894	Cucurbita maxima (Rimu)	carcmaB0840
Carg13894	Cucurbita maxima (Rimu)	carcmaB0842
Carg13894	Cucurbita moschata (Rifu)	carcmoB0818
Carg13894	Cucurbita moschata (Rifu)	carcmoB0820
Carg13894	Cucurbita pepo (Zucchini)	carcpeB0849
Carg13894	Cucurbita pepo (Zucchini)	carcpeB0851
Carg13894	Wild cucumber (PI 183967)	carcpiB0638
Carg13894	Cucumber (Chinese Long) v2	carcuB0632
Carg13894	Bottle gourd (USVL1VR-Ls)	carlsiB546
Carg13894	Watermelon (Charleston Gray)	carwcgB0584
Carg13894	Watermelon (97103) v1	carwmB0597
Carg13894	Watermelon (97103) v2	carwmbB0630