Carg13850 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13850
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_042 : 234293 .. 235831 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCTGTCTGTTTTACCAAAGGGGTTTTTGGCCCTACAACACATGGTCTGTCGAAGGTGTGGCTCACTGGTCCCCTTCTCTTCTTTTTAGGTCACTTCTCGGGTCGTGCGGTTCGATTTTGTTTGGTTAACCCTAAACATTGGTCCGCTTCTCTTCTTTTTAGGTCACTTCTCAGGTTGTGCGGTTCGTTTTTGTTTGGTTAACCCTAAACATCGGTAAGATATTTGACTTGAAACTATTGATTTGGTTGAGGTAAGTATACATTTAACTCGGGTAATAAAGGATGTCGTAGGATATTATCTCAAAACTAAAATTTCGTAGCACGATTAATTCTCATACCTAAACCAATTTGATTACTCGAATTGTGATACATTCTTTTACTTTGGGTGAAGTAGAAAGGGGTGCTATCAATTAATATTCGTGAATCTGATTCGTTTGGTCAAATTGATGACTAATTTACGAGAGCGACGGGTGAAAATAGAACTTTCAAAGCGAAGAAAAAGACATTTGAATTTTGTAAATGCTAAGACTTAATGCTAAGACTTAATCCATAAGGGACCAAGTTAATTCAAACAAATGTCTTGCTTTAGAAGCAATACATGATCACGTTGTCGTTTTCAATACGAATAAATGTTAACTCCGTTCTCACTCTCTCAATTATGGTAAAAATGGCCATATATATATATATATATGTTAGCTCACCTCGATGTCTATATGACCATAATTCACGGGCAAAAAAAATGTTAGATTGATATAACTTATCTCGATTTTGTAACTTTTAAGATAAGAAAAGGTAGAGAATGGAGAAAGAAGAAAGGAAGAGTAAGGATTGGTAAAAAGTAATCTAAAAAGACACGCAGTTACGACCAAGTAATCAAACTTAGAAAATTGGTCTTAATATCGAAATTGGTCTTAATATCGTCCCAACAAACTTAGAAAATTGGTCTTAATATCGTCCCAAAAAAACTTAGAAAAAGGTCTTAATATCAAAATTGGTCTTAATATCGTCCCAACAAACTTAGAAAATTGGTCTTAATATCGTCCCAAAAAAACTTAATATCAAAATTGGTCTTAATATCGTCCCAACAAACTTAGAAAATTGGTCTTAATATCGTCCCAAAAAAGAAAAAGGTCTTAATATCGTCCAAAAAAAACCAAAGAAGGTAAGGTTAAAAATGGAAAACGGACTAGTTTAAATGGGGGAGAATGTTAAAAAGGAAAACGGACTAGTTTAAATGGGGGAGAATGTTAAAAAAGGAAAACGGACTAGTTTAAATGGGGGAGAATGTTAAAAAAGGAAAACGGACTAGTTTAAATGGGGGAGAATGTCACAACCTAACTATGAAGAGAGTAGGTTGTGACCCTCACGTTGCGACAATAGAAGCGGCGACCTTCAAGTGGCGCCCATCCGGCCACTCGTGGGCCTAGACGAGTGTCATGATGCGACCGAGGAGAATGGTGCATCATCTAACACACCAAACGAAGTGGGCATTGAAGACGAGTTGAGACATAAACAAGATAGAGACATCGAATAG

mRNA sequence

ATGGTCTCTGTCTGTTTTACCAAAGGGGTTTTTGGCCCTACAACACATGGTCTGTCGAAGGTCACTTCTCAGGTTGTGCGGTTCGTTTTTGTTTGGTTAACCCTAAACATCGGTAAGATATTTGACTTGAAACTATTGATTTGGTTGAGAAGCGGCGACCTTCAAGTGGCGCCCATCCGGCCACTCGTGGGCCTAGACGAGTGTCATGATGCGACCGAGGAGAATGGTGCATCATCTAACACACCAAACGAAGTGGGCATTGAAGACGAGTTGAGACATAAACAAGATAGAGACATCGAATAG

Coding sequence (CDS)

ATGGTCTCTGTCTGTTTTACCAAAGGGGTTTTTGGCCCTACAACACATGGTCTGTCGAAGGTCACTTCTCAGGTTGTGCGGTTCGTTTTTGTTTGGTTAACCCTAAACATCGGTAAGATATTTGACTTGAAACTATTGATTTGGTTGAGAAGCGGCGACCTTCAAGTGGCGCCCATCCGGCCACTCGTGGGCCTAGACGAGTGTCATGATGCGACCGAGGAGAATGGTGCATCATCTAACACACCAAACGAAGTGGGCATTGAAGACGAGTTGAGACATAAACAAGATAGAGACATCGAATAG

Protein sequence

MVSVCFTKGVFGPTTHGLSKVTSQVVRFVFVWLTLNIGKIFDLKLLIWLRSGDLQVAPIRPLVGLDECHDATEENGASSNTPNEVGIEDELRHKQDRDIE

Homology

[Close]

BLAST of Carg13850 vs. NCBI nr
Match: XP_022943467.1 (uncharacterized protein LOC111448226 [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 50  RSGDLQVAPIRPLVGLDECHDATEENGASSNTPNEVGIEDELRHKQDRDIE 101
           RS D QVA I P  GLDECHDA  E+GA SNTP+ V IED+ RHKQDRDIE
Sbjct: 111 RSDDPQVARIWPHEGLDECHDAIVEDGALSNTPHRVSIEDKSRHKQDRDIE 161

The following BLAST results are available for this feature:

BLAST of Carg13850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943467.1	2.9e-09	70.59	uncharacterized protein LOC111448226 [Cucurbita moschata]	[more]

BLAST of Carg13850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13850 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13850-RA	Carg13850-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13850	Silver-seed gourd	carcarB539
Carg13850	Cucumber (Gy14) v2	carcgybB0601
Carg13850	Cucumber (Gy14) v2	carcgybB0602
Carg13850	Cucumber (Gy14) v1	carcgyB0678
Carg13850	Cucurbita maxima (Rimu)	carcmaB0841
Carg13850	Cucurbita maxima (Rimu)	carcmaB0842
Carg13850	Cucurbita moschata (Rifu)	carcmoB0819
Carg13850	Cucurbita moschata (Rifu)	carcmoB0820
Carg13850	Cucurbita pepo (Zucchini)	carcpeB0850
Carg13850	Cucurbita pepo (Zucchini)	carcpeB0851
Carg13850	Wild cucumber (PI 183967)	carcpiB0635
Carg13850	Wild cucumber (PI 183967)	carcpiB0636
Carg13850	Cucumber (Chinese Long) v2	carcuB0629
Carg13850	Cucumber (Chinese Long) v2	carcuB0630
Carg13850	Cucumber (Chinese Long) v3	carcucB0636
Carg13850	Cucumber (Chinese Long) v3	carcucB0637
Carg13850	Bottle gourd (USVL1VR-Ls)	carlsiB545
Carg13850	Melon (DHL92) v3.5.1	carmeB0603
Carg13850	Melon (DHL92) v3.5.1	carmeB0607
Carg13850	Melon (DHL92) v3.6.1	carmedB0609
Carg13850	Melon (DHL92) v3.6.1	carmedB0613
Carg13850	Watermelon (Charleston Gray)	carwcgB0586
Carg13850	Watermelon (97103) v1	carwmB0600
Carg13850	Watermelon (97103) v1	carwmB0601
Carg13850	Watermelon (97103) v2	carwmbB0627
Carg13850	Watermelon (97103) v2	carwmbB0628
Carg13850	Wax gourd	carwgoB0713