Carg13839 (gene) Silver-seed gourd

Overview
NameCarg13839
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RHA1B
LocationCucurbita_argyrosperma_scaffold_042 : 163056 .. 163556 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCGGGAGGTTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTGTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG

mRNA sequence

ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCGGGAGGTTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTGTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG

Coding sequence (CDS)

ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCGGGAGGTTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTGTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG

Protein sequence

MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG
Homology
[Close]
BLAST of Carg13839 vs. NCBI nr
Match: XP_023514786.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.7 bits (870), Expect = 5.5e-90
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSD+A+SREVGIPLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDSAISREVGIPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
           ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW
Sbjct: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 167
           MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAE DSEFNSVLG
Sbjct: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAELDSEFNSVLG 166

[Close]
BLAST of Carg13839 vs. NCBI nr
Match: XP_022964361.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita moschata])

HSP 1 Score: 338.2 bits (866), Expect = 1.6e-89
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFL+SDAA+SRE GIPLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLYSDAAISREGGIPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
           ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW
Sbjct: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 167
           MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG
Sbjct: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 166

[Close]
BLAST of Carg13839 vs. NCBI nr
Match: XP_023000136.1 (probable E3 ubiquitin-protein ligase RHA1A [Cucurbita maxima])

HSP 1 Score: 328.6 bits (841), Expect = 1.3e-86
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVS EVG PLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSPEVGFPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
           ASAV+LREFLPVVKFSDVPQ   AAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW
Sbjct: 61  ASAVLLREFLPVVKFSDVPQ---AAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 167
           MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG
Sbjct: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 163

[Close]
BLAST of Carg13839 vs. NCBI nr
Match: XP_008458180.1 (PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 134/167 (80.24%), Postives = 144/167 (86.23%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLDLLK LIL LFRLLGLPEFL SD  +  E+  PLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKFLILSLFRLLGLPEFLPSD-NLPPELQFPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
            SA++LRE LPVVKFSD+P       E CAVCLYEFEGAEEIRWLTNCKHIFHR C+DRW
Sbjct: 61  PSALLLRELLPVVKFSDLPN----PPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCLDRW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAE-FDSEFNSVLG 167
           MDHD  TCPLCRTPFVPDGMMDEFNQRLWAASG+AE F+++FNSVLG
Sbjct: 121 MDHDHDTCPLCRTPFVPDGMMDEFNQRLWAASGVAETFETDFNSVLG 162

[Close]
BLAST of Carg13839 vs. NCBI nr
Match: XP_004138493.1 (PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis sativus] >KGN45683.1 hypothetical protein Csa_6G006705 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 3.8e-67
Identity = 133/167 (79.64%), Postives = 142/167 (85.03%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLD+LK LIL LFRLLGLPEFL SD  +  E+  PLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDVLKFLILSLFRLLGLPEFLPSD-NLPPELQFPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
            SA++LRE LPVVKFSD+P       E CAVCLYEFEGAEEIRWLTNCKHIFHR CVD W
Sbjct: 61  PSALLLRELLPVVKFSDLPN----PPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCVDSW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAE-FDSEFNSVLG 167
           MDHD  TCPLCRTPFVPD MMDEFNQRLWAASGIAE F+++FNSVLG
Sbjct: 121 MDHDHDTCPLCRTPFVPDEMMDEFNQRLWAASGIAETFETDFNSVLG 162

[Close]
BLAST of Carg13839 vs. TAIR10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 204.1 bits (518), Expect = 6.5e-53
Identity = 96/170 (56.47%), Postives = 120/170 (70.59%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAA----VSREVGIP 60
           MGFPVG TEVF P +F+  LS+L  ++ ++  +FR LGL +FL  D       S    IP
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTSYPTRIP 60

Query: 61  -LNPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRG 120
               P SA+++RE LPV+KF ++  + E   E+CAVCLYEFEG +EIRWL NC+HIFHR 
Sbjct: 61  ETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRS 120

Query: 121 CVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVL 166
           C+DRWMDHDQKTCPLCRTPFVPD M +EFNQRLWAASG+ +F      +L
Sbjct: 121 CLDRWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVHDFHCPVTELL 170

[Close]
BLAST of Carg13839 vs. TAIR10
Match: AT1G63840.1 (RING/U-box superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-40
Identity = 80/156 (51.28%), Postives = 110/156 (70.51%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIP---L 60
           MGFPVG +E+  P IF +LLS L L+++LI  +F+++GLP+FL  +   +     P    
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 61  NPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCV 120
            P ++A++  E LPVV+FSD+ +     +E CAVCLY+FE  +EIR LTNC+HIFHRGC+
Sbjct: 61  KPDSAAILAGEMLPVVRFSDINR---PESECCAVCLYDFENDDEIRRLTNCRHIFHRGCL 120

Query: 121 DRW-MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAAS 153
           DRW M ++Q TCPLCRT F+PD +  EFNQRLW+ S
Sbjct: 121 DRWMMGYNQMTCPLCRTQFIPDHLQLEFNQRLWSQS 153

[Close]
BLAST of Carg13839 vs. TAIR10
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-36
Identity = 79/169 (46.75%), Postives = 105/169 (62.13%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAA------------ 60
           MG+PVG TE+  P IFLHLLSLL L++ LI   FR+LGLP+FL SD              
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSXXXXXXXXXXX 60

Query: 61  ---VSREVGIPLNPPASAVVLREFLPVVKFSDVPQAA-EAAAESCAVCLYEFEGAEEIRW 120
                           +A +  E LPV++FS++ +    + ++ CAVCL+EFE  +EIR 
Sbjct: 61  XXXXXXXXXXXXXXXVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 121 LTNCKHIFHRGCVDRW-MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAAS 153
           LTNC+HIFHR C+DRW M ++Q TCPLCRTPF+ D +   FNQR+W+ S
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVAFNQRVWSES 169

[Close]
BLAST of Carg13839 vs. TAIR10
Match: AT4G00305.1 (RING/U-box superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 64  VVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDH 123
           + + + LP  KF D+        ESC +C  EF+G +E+R L NC H++H+ C+DRW+  
Sbjct: 47  IPMDDMLPATKFEDISSRVN-PPESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQD 106

Query: 124 DQKTCPLCRTPFVPD 139
           D+ TCPLCRTP VPD
Sbjct: 107 DKMTCPLCRTPIVPD 120

[Close]
BLAST of Carg13839 vs. TAIR10
Match: AT4G11370.1 (RING-H2 finger A1A)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 0 

Query: 1   MGFPVG-CTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFL-HSDAAVSREVGIPLN 60
           MG P    TE+  P+  L +L ++   + ++  L   +GLP FL H++ +        L+
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALS 60

Query: 61  PPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVD 120
              SA +  E +PVV+FSD+P   E   + C VCL +FE  +++R L  C H+FH  C+D
Sbjct: 61  --TSASLANELIPVVRFSDLPTDPE---DCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 121 RW-MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNS 164
           RW +D+++  CP+CR  F+P    +++ Q  W  SG   F  E  S
Sbjct: 121 RWIVDYNKMKCPVCRHRFLP---KEKYTQSDW-GSGSDWFSDEVES 157

[Close]
BLAST of Carg13839 vs. Swiss-Prot
Match: sp|Q9SUS4|RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-17
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 0 

Query: 1   MGFPVG-CTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFL-HSDAAVSREVGIPLN 60
           MG P    TE+  P+  L +L ++   + ++  L   +GLP FL H++ +        L+
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDLTRHALS 60

Query: 61  PPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVD 120
              SA +  E +PVV+FSD+P   E   + C VCL +FE  +++R L  C H+FH  C+D
Sbjct: 61  --TSASLANELIPVVRFSDLPTDPE---DCCTVCLSDFESDDKVRQLPKCGHVFHHYCLD 120

Query: 121 RW-MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNS 164
           RW +D+++  CP+CR  F+P    +++ Q  W  SG   F  E  S
Sbjct: 121 RWIVDYNKMKCPVCRHRFLP---KEKYTQSDW-GSGSDWFSDEVES 157

[Close]
BLAST of Carg13839 vs. Swiss-Prot
Match: sp|Q9SUS5|RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFL-HSDAAVSREVGIPLNP 60
           MG P    E+  P   L  L ++   + ++  L   +GLP FL H++ + S    + L+ 
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHNETSRSDPTRLALS- 60

Query: 61  PASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDR 120
             SA +  E +PVV+FSD+    E   + C VCL +F   ++IR L  C H+FH  C+DR
Sbjct: 61  -TSATLANELIPVVRFSDLLTDPE---DCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDR 120

Query: 121 W-MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAAS 153
           W +D ++ TCP+CR  F+P+     F+   W  S
Sbjct: 121 WIVDCNKITCPICRNRFLPEEKSTPFD---WGTS 146

[Close]
BLAST of Carg13839 vs. Swiss-Prot
Match: sp|Q9SI09|XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 67  REFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQK 126
           R   P ++F  + +  + A   C+VCL +F+G  EI  L  C H+FH+ C+++W+D+   
Sbjct: 81  RNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL-KCGHLFHKTCLEKWIDYWNI 140

Query: 127 TCPLCRTPFVPDGMMDEFNQRLW 150
           TCPLCRTP V      + +  +W
Sbjct: 141 TCPLCRTPLVVVPEDHQLSSNVW 162

[Close]
BLAST of Carg13839 vs. Swiss-Prot
Match: sp|O49691|ATL29_ARATH (RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 0 

Query: 45  SDAAVSREVGIPLNPPASAVVLREFLPVVKFSDVPQAAEAA-AESCAVCLYEFEGAEEIR 104
           SD  + +    P+NP     ++  F P   +S V    E      CA+CL EF+G   +R
Sbjct: 66  SDNPLQQPEAPPVNPGLELRIINSF-PTFPYSSVKDLREEKYGLECAICLLEFDGDHVLR 125

Query: 105 WLTNCKHIFHRGCVDRWMDHDQKTCPLCR 133
            LT C H+FH+ C+D W +   +TCP+CR
Sbjct: 126 LLTTCYHVFHQECIDLWFE-SHRTCPVCR 152

[Close]
BLAST of Carg13839 vs. Swiss-Prot
Match: sp|Q9LY41|ATL4_ARATH (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.5e-10
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0 

Query: 54  GIPLNPPASAVVLREFLPVVKFSDVPQAAEAA-AESCAVCLYEFEGAEEIRWLTNCKHIF 113
           G  ++P      + + LP+ KFS V + + +  +  CAVCL +FE  +++R L  C H F
Sbjct: 81  GHRVSPETERSSVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAF 140

Query: 114 HRGCVDRWMDHDQKTCPLCRTP 135
           H  C+D W+  +Q TCPLCR+P
Sbjct: 141 HADCIDIWLVSNQ-TCPLCRSP 161

[Close]
BLAST of Carg13839 vs. TrEMBL
Match: tr|A0A1S3C782|A0A1S3C782_CUCME (E3 ubiquitin-protein ligase RHA1B OS=Cucumis melo OX=3656 GN=LOC103497696 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 7.8e-69
Identity = 134/167 (80.24%), Postives = 144/167 (86.23%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLDLLK LIL LFRLLGLPEFL SD  +  E+  PLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKFLILSLFRLLGLPEFLPSD-NLPPELQFPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
            SA++LRE LPVVKFSD+P       E CAVCLYEFEGAEEIRWLTNCKHIFHR C+DRW
Sbjct: 61  PSALLLRELLPVVKFSDLPN----PPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCLDRW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAE-FDSEFNSVLG 167
           MDHD  TCPLCRTPFVPDGMMDEFNQRLWAASG+AE F+++FNSVLG
Sbjct: 121 MDHDHDTCPLCRTPFVPDGMMDEFNQRLWAASGVAETFETDFNSVLG 162

[Close]
BLAST of Carg13839 vs. TrEMBL
Match: tr|A0A0A0K874|A0A0A0K874_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006705 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 2.5e-67
Identity = 133/167 (79.64%), Postives = 142/167 (85.03%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPP 60
           MGFPVGCTEVFFPTIFLHLLSLLD+LK LIL LFRLLGLPEFL SD  +  E+  PLNPP
Sbjct: 1   MGFPVGCTEVFFPTIFLHLLSLLDVLKFLILSLFRLLGLPEFLPSD-NLPPELQFPLNPP 60

Query: 61  ASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRW 120
            SA++LRE LPVVKFSD+P       E CAVCLYEFEGAEEIRWLTNCKHIFHR CVD W
Sbjct: 61  PSALLLRELLPVVKFSDLPN----PPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCVDSW 120

Query: 121 MDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAE-FDSEFNSVLG 167
           MDHD  TCPLCRTPFVPD MMDEFNQRLWAASGIAE F+++FNSVLG
Sbjct: 121 MDHDHDTCPLCRTPFVPDEMMDEFNQRLWAASGIAETFETDFNSVLG 162

[Close]
BLAST of Carg13839 vs. TrEMBL
Match: tr|W9SMG3|W9SMG3_9ROSA (E3 ubiquitin-protein ligase RHA1B OS=Morus notabilis OX=981085 GN=L484_021468 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 112/169 (66.27%), Postives = 131/169 (77.51%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDA----AVSREVGIP 60
           MGFPVG TEVFFP +FLH LSLL  ++ LI  LF  LGL +FL +D     + S     P
Sbjct: 1   MGFPVGYTEVFFPNLFLHTLSLLGFIRNLIFSLFHFLGLSDFLETDVVWPQSSSPPAQSP 60

Query: 61  LNPPASAVVLREFLPVVKFSDVPQAAEA--AAESCAVCLYEFEGAEEIRWLTNCKHIFHR 120
            NPP SA+++RE LPV+KFSD+   A A  + ESCAVCLYEF+G EEIRWLTNC+HIFHR
Sbjct: 61  ENPPVSALLIRELLPVIKFSDLDSVAGAGNSPESCAVCLYEFDGEEEIRWLTNCRHIFHR 120

Query: 121 GCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNS 164
            C+DRWMDHDQKTCPLCRTPFVPD M DEFNQRLWAASG+A+F SE++S
Sbjct: 121 ACLDRWMDHDQKTCPLCRTPFVPDEMKDEFNQRLWAASGVADFYSEYSS 169

[Close]
BLAST of Carg13839 vs. TrEMBL
Match: tr|A0A2P5FHT8|A0A2P5FHT8_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068000 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 112/173 (64.74%), Postives = 131/173 (75.72%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSD-------AAVSREV 60
           MGFPVG TEVFFP +FLH LSLL  ++ LI  LF LLGL EFL +D       ++ +   
Sbjct: 1   MGFPVGYTEVFFPNLFLHTLSLLGFIRNLIFSLFHLLGLSEFLETDVVWPQSSSSSATAT 60

Query: 61  GIPLNPPASAVVLREFLPVVKFSDVPQAAEAA--AESCAVCLYEFEGAEEIRWLTNCKHI 120
               NPP SA+++RE LPV+KF D+   A A    ESCAVCLYEFEG EEIRWLTNCKH+
Sbjct: 61  QSSENPPVSAILIRELLPVIKFRDLETVAGAGEPPESCAVCLYEFEGGEEIRWLTNCKHV 120

Query: 121 FHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSV 165
           FHR C+DRWMDHDQKTCPLCRTPFVPD M DEFNQRLWAASG+++F SE++SV
Sbjct: 121 FHRACLDRWMDHDQKTCPLCRTPFVPDEMRDEFNQRLWAASGVSDFYSEYSSV 173

[Close]
BLAST of Carg13839 vs. TrEMBL
Match: tr|A0A2P5D438|A0A2P5D438_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098670 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 5.8e-56
Identity = 111/174 (63.79%), Postives = 127/174 (72.99%), Query Frame = 0 

Query: 1   MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAA--------VSRE 60
           MGFPVG TEVFFP +FLH LSLL  ++ LI  LF LLGL EFL +D              
Sbjct: 1   MGFPVGYTEVFFPNLFLHTLSLLGFIRNLIFSLFHLLGLSEFLETDVVWPTSXXXXXXXX 60

Query: 61  VGIPLNPPASAVVLREFLPVVKFSDVPQAAEAA--AESCAVCLYEFEGAEEIRWLTNCKH 120
                  P SA+++RE LPV+KF D+   A A    ESCAVCLYEFEGAEEIRWLTNCKH
Sbjct: 61  XXXXXXXPVSAILIRELLPVIKFRDLETVAGAGEPPESCAVCLYEFEGAEEIRWLTNCKH 120

Query: 121 IFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSV 165
           +FHR C+DRWMDHDQKTCPLCRTPFVPD M DEFNQRLWAASG+++F SE++SV
Sbjct: 121 VFHRACLDRWMDHDQKTCPLCRTPFVPDEMKDEFNQRLWAASGVSDFYSEYSSV 174

The following BLAST results are available for this feature:
BLAST of Carg13839 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023514786.15.5e-9098.19E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo][more]
XP_022964361.11.6e-8998.19E3 ubiquitin-protein ligase RHA1B-like [Cucurbita moschata][more]
XP_023000136.11.3e-8696.39probable E3 ubiquitin-protein ligase RHA1A [Cucurbita maxima][more]
XP_008458180.11.2e-6880.24PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis melo][more]
XP_004138493.13.8e-6779.64PREDICTED: E3 ubiquitin-protein ligase RHA1B [Cucumis sativus] >KGN45683.1 hypot... [more]
BLAST of Carg13839 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61460.16.5e-5356.47brassinosteroid-responsive RING-H2[more]
AT1G63840.12.2e-4051.28RING/U-box superfamily protein[more]
AT5G41400.17.2e-3646.75RING/U-box superfamily protein[more]
AT4G00305.11.8e-1846.67RING/U-box superfamily protein[more]
AT4G11370.12.3e-1834.34RING-H2 finger A1A[more]
BLAST of Carg13839 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SUS4|RHA1A_ARATH4.2e-1734.34Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
sp|Q9SUS5|RHA1B_ARATH1.6e-1634.42E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ... [more]
sp|Q9SI09|XERIC_ARATH2.6e-1136.14Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X... [more]
sp|O49691|ATL29_ARATH2.9e-1035.96RING-H2 finger protein ATL29 OS=Arabidopsis thaliana OX=3702 GN=ATL29 PE=3 SV=1[more]
sp|Q9LY41|ATL4_ARATH8.5e-1039.02E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV... [more]
BLAST of Carg13839 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C782|A0A1S3C782_CUCME7.8e-6980.24E3 ubiquitin-protein ligase RHA1B OS=Cucumis melo OX=3656 GN=LOC103497696 PE=4 S... [more]
tr|A0A0A0K874|A0A0A0K874_CUCSA2.5e-6779.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006705 PE=4 SV=1[more]
tr|W9SMG3|W9SMG3_9ROSA1.1e-5766.27E3 ubiquitin-protein ligase RHA1B OS=Morus notabilis OX=981085 GN=L484_021468 PE... [more]
tr|A0A2P5FHT8|A0A2P5FHT8_9ROSA2.4e-5764.7443kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_068000 PE=... [more]
tr|A0A2P5D438|A0A2P5D438_PARAD5.8e-5663.7943kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098670... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13839-RACarg13839-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 89..131
e-value: 2.4E-6
score: 37.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 88..132
e-value: 1.2E-12
score: 47.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 89..132
score: 12.371
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 66..138
e-value: 2.4E-18
score: 67.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..159
NoneNo IPR availablePANTHERPTHR14155:SF463SUBFAMILY NOT NAMEDcoord: 1..159
NoneNo IPR availableCDDcd16448RING-H2coord: 89..132
e-value: 2.76019E-13
score: 60.1583
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 88..138

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13839Cla006626Watermelon (97103) v1carwmB0601
Carg13839Cla021223Watermelon (97103) v1carwmB0600
Carg13839Csa3G121750Cucumber (Chinese Long) v2carcuB0629
Carg13839MELO3C006095Melon (DHL92) v3.5.1carmeB0607
Carg13839MELO3C021190Melon (DHL92) v3.5.1carmeB0603
Carg13839ClCG06G003510Watermelon (Charleston Gray)carwcgB0586
Carg13839CSPI06G00710Wild cucumber (PI 183967)carcpiB0636
Carg13839CSPI03G08640Wild cucumber (PI 183967)carcpiB0635
Carg13839Cucsa.135690Cucumber (Gy14) v1carcgyB0678
Carg13839CmaCh17G004500Cucurbita maxima (Rimu)carcmaB0841
Carg13839CmaCh08G008930Cucurbita maxima (Rimu)carcmaB0842
Carg13839CmoCh08G008660Cucurbita moschata (Rifu)carcmoB0820
Carg13839Lsi09G015870Bottle gourd (USVL1VR-Ls)carlsiB545
Carg13839Cp4.1LG12g03770Cucurbita pepo (Zucchini)carcpeB0850
Carg13839Cp4.1LG17g03670Cucurbita pepo (Zucchini)carcpeB0851
Carg13839CsGy3G008720Cucumber (Gy14) v2carcgybB0601
Carg13839CsGy6G000770Cucumber (Gy14) v2carcgybB0602
Carg13839MELO3C021190.2Melon (DHL92) v3.6.1carmedB0609
Carg13839MELO3C006095.2Melon (DHL92) v3.6.1carmedB0613
Carg13839CsaV3_6G000800Cucumber (Chinese Long) v3carcucB0637
Carg13839CsaV3_3G008780Cucumber (Chinese Long) v3carcucB0636
Carg13839Cla97C05G081740Watermelon (97103) v2carwmbB0627
Carg13839Cla97C06G112880Watermelon (97103) v2carwmbB0628
Carg13839Bhi12G001684Wax gourdcarwgoB0714
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13839Carg05621Silver-seed gourdcarcarB082
The following block(s) are covering this gene:
GeneOrganismBlock
Carg13839Cucurbita moschata (Rifu)carcmoB0819
Carg13839Cucumber (Chinese Long) v2carcuB0630