Carg13808 (gene) Silver-seed gourd

NameCarg13808
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_058 : 660183 .. 662508 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAACAGTTCTGCTTTGGAATGTATTTGTATTGGATGCAAGTTGCAACACACGCACGCACGCACGCACAATTTGGGGTGGAAGACAGGCAAGAGGAAGCTGAACAACTTACTCTCTCTGTGTTGAAGGTTGAAGAAGAAGAATCAATGAAATAAATGGCAGAATTATTTGCCCCACCTACTGTTGTTATCTTTGATTTCTATTGGCTAGTATCTCTATTTACATCAACCAATGCCAAATTCTTCCTTCTAGGGAAATGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCGCTCCCCTTGTGGGATATCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACGTCAGTAAGTAAAGTTCGTACTCTCCTGACATATATGCTGTATTTGTTTCTTTTCTTTTATCTTCCTTTCTTGTTTCTTACCATATTTTTTAGCTGCTCGAAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCGGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGGTGATGTAAGGTGAATTTCCCACATAGTCTATTCTGAACATCTCTAGCAATGCATCATTCCACTTTGGCTGCAAAACACTCATTTCATCAGTACCATATTTGTCTTCATTCTAACAGACTACAAGGTTTGGAAATGTGGAAAGACCTGTTTCAGAAAGCCAGCTCCAAACGCCCGTGTGATTTTCAAATAACCTTTCACCCTGTCATTCATAATTGCGGAAGGGTCGTCAGGATGAGCATTCTTGATCCTCTGAACTTCCTGATGATATTCAAGTTTTCTCTCATAAATGCATGTAATCTAAATGCAGTGTTTTGTGGAAGATGAGTGATATTGACAAGAACATTACCTCCTCTGTGTACGTGCTGTGGTCCATTGTAAGCTGATGGGAAGCCAAGGCTGTTAATCTTTCAGGGGATTCTAATACTCGTAGTGTTCCTTCATTGATTCTCTCCAGGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGGTACACATCTTCTCCTCTCATTAACATAACCAAAACACAAGAACCCATTAGAGCTAGCTCAGGATTTCTTGTGGCCATCTTGTCTGCATTCTGCAGATATGATTCCTCTGTTTTTTTCAATGCTTCAGACAGAGCATTCAACACCTCAGAATGATTGATTGTTGTTGATTCATCCCATATGTTGTGGTGATCTAATCCTATGCTTTCCCTTTCCCTTTCCCATTTCCAATTCTTTGGATCCTGATCGCCCTTCTTCATCAGCTGTCTCGTCCTATTTTCTGCCGAAAAGTTCTCTGTAGGTTGATGAACATTAGCCTGAGTTTTTATGTGGGTTGTTCCATGATCGTCTTCCTCAATTGAAGCAGAGTTGGATGAGTTCATGGAAGACGTGGTTGCAGTTGAATCGAACTTATCATTCCATATCAAACCCTTGAGCTCTTTGAGAACGGCAGTGTAGAGATTAGCGAGTAAGTAATCAGGAGCATCAGGGCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTATCCTCCGATATCACCACGTGAACTCTATCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCCTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATTATGTTTGTATGAACTCGCAGCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTCAGAACCCGAATGAGACTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTTAGAGACGCTTCTCTGCAATTTCTCAGGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCCCGATTCGATGCTCCGGGAGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGAATCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAGCGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCCGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGGAAAATGGTCGCTGGAGAGATGTAGTCATCCGGGAAAGCTT

mRNA sequence

CCAAACAGTTCTGCTTTGGAATGTATTTGTATTGGATGCAAGTTGCAACACACGCACGCACGCACGCACAATTTGGGGTGGAAGACAGGCAAGAGGAAGCTGAACAACTTACTCTCTCTGTGTTGAAGGGAAATGATGATCACTGAAACGTCGTCGTGGTACTTCCGCCGCTCCCCTTGTGGGATATCAAGCAGCTCATGGAAGGCCATTCCTGCATGTTTTCCAAATCACGTCAGTAAGTAAAGTTCGTACTCTCCTGACATATATGCTGTATTTGTTTCTTTTCTTTTATCTTCCTTTCTTGTTTCTTACCATATTTTTTAGCTGCTCGAAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCGGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGGTGATGTAAGGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGGAGCATCAGGGCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTATCCTCCGATATCACCACGTGAACTCTATCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCCTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATTATCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTCAGAACCCGAATGAGACTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCCCGATTCGATGCTCCGGGAGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGAATCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAGCGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCCGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGGAAAATGGTCGCTGGAGAGATGTAGTCATCCGGGAAAGCTT

Coding sequence (CDS)

ATGCTGTATTTGTTTCTTTTCTTTTATCTTCCTTTCTTGTTTCTTACCATATTTTTTAGCTGCTCGAAACAATACTTCTTCAATGAGATTTTGAGCAGGATCTCCTTCAGGGAAAGAAGCAATGAAGGACTCTACTTGAGCAACAGCTTCTTCATTTGTAAAGTATTGATAGAGTCCATCAGACGACAATATCAAGAATCTGTCGGTTGGGCTGAGTTTATAATGGCACAGAGTTGGATCACAGGTGATGTAAGGTCTCTGTATGGTTCGAGTTGCTGCGCTACAATTGCACGGCTGTCTCCTACATTCATCAGGAGCATCAGGGCCGTTGAATCCATCATAAACTCCGACAAAAACCCAACCATTATCCTCCGATATCACCACGTGAACTCTATCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCCCTGACCGCCGACAAAGTAATCGCCATCGTCTTCCTGCGCCAAACTGGCCTGGCTGCTCAAATGAACACTGCTTTGAGTCTGAGCTGCATTCTCATTATCCTTCTGGTTTCGAGAAATGGTTTTGGATATGGCTCTCTTCAGAACCCGAATGAGACTTCTTTTCGATTTCGGTTGTCTATCTCCAACGCCGCCGTCCGCCGCCCTTCTCAATCGAGCCGGAGTAAACCACTCGATCTATCGGGCCCGATTCGATGCTCCGGGAGGCCAAGGGTCCGGATAAGAACCCTCTCTCCATTGGACCCGAAGAAGGGAATCCACCGAAATTTCCCGACATCGAGTGGCGTGGCACCGGCTGTAGCGGCACAGAGGCAAAGGAATTCGAGCAATCGAAAGCAGCCGCCCGATCAAACGTGGTGCTATAAGGATATAGATCGACCAGAGACGTGGACAGCGGCGTTGAGACGTTGGCGCTTACAGAGGCGCCGGAAATCGACCGGAAAATGGTCGCTGGAGAGATGTAGTCATCCGGGAAAGCTT

Protein sequence

MLYLFLFFYLPFLFLTIFFSCSKQYFFNEILSRISFRERSNEGLYLSNSFFICKVLIESIRRQYQESVGWAEFIMAQSWITGDVRSLYGSSCCATIARLSPTFIRSIRAVESIINSDKNPTIILRYHHVNSILTGLPLCPLYALTADKVIAIVFLRQTGLAAQMNTALSLSCILIILLVSRNGFGYGSLQNPNETSFRFRLSISNAAVRRPSQSSRSKPLDLSGPIRCSGRPRVRIRTLSPLDPKKGIHRNFPTSSGVAPAVAAQRQRNSSNRKQPPDQTWCYKDIDRPETWTAALRRWRLQRRRKSTGKWSLERCSHPGKL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13808-RACarg13808-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..278

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13808CmaCh03G004260Cucurbita maxima (Rimu)carcmaB1276
Carg13808CmaCh07G009950Cucurbita maxima (Rimu)carcmaB1278
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13808Silver-seed gourdcarcarB336
Carg13808Silver-seed gourdcarcarB199
Carg13808Silver-seed gourdcarcarB367
Carg13808Silver-seed gourdcarcarB532
Carg13808Silver-seed gourdcarcarB644
Carg13808Cucumber (Gy14) v2carcgybB0921
Carg13808Cucumber (Gy14) v1carcgyB1049
Carg13808Cucumber (Gy14) v1carcgyB1051
Carg13808Cucurbita maxima (Rimu)carcmaB1277
Carg13808Cucurbita moschata (Rifu)carcmoB1246
Carg13808Cucurbita moschata (Rifu)carcmoB1247
Carg13808Cucurbita moschata (Rifu)carcmoB1248
Carg13808Cucurbita moschata (Rifu)carcmoB1249
Carg13808Cucurbita pepo (Zucchini)carcpeB1290
Carg13808Cucurbita pepo (Zucchini)carcpeB1288
Carg13808Cucurbita pepo (Zucchini)carcpeB1292
Carg13808Wild cucumber (PI 183967)carcpiB0969
Carg13808Wild cucumber (PI 183967)carcpiB0970
Carg13808Cucumber (Chinese Long) v2carcuB0946
Carg13808Cucumber (Chinese Long) v2carcuB0947
Carg13808Cucumber (Chinese Long) v3carcucB0971
Carg13808Bottle gourd (USVL1VR-Ls)carlsiB844
Carg13808Bottle gourd (USVL1VR-Ls)carlsiB849
Carg13808Melon (DHL92) v3.5.1carmeB0913
Carg13808Melon (DHL92) v3.5.1carmeB0915
Carg13808Melon (DHL92) v3.5.1carmeB0916
Carg13808Melon (DHL92) v3.6.1carmedB0920
Carg13808Melon (DHL92) v3.6.1carmedB0923
Carg13808Watermelon (Charleston Gray)carwcgB0905
Carg13808Watermelon (Charleston Gray)carwcgB0909
Carg13808Watermelon (97103) v1carwmB0933
Carg13808Watermelon (97103) v1carwmB0929
Carg13808Watermelon (97103) v2carwmbB0973
Carg13808Watermelon (97103) v2carwmbB0975
Carg13808Watermelon (97103) v2carwmbB0977
Carg13808Watermelon (97103) v2carwmbB0978
Carg13808Wax gourdcarwgoB1070
Carg13808Wax gourdcarwgoB1072
Carg13808Wax gourdcarwgoB1073
Carg13808Wax gourdcarwgoB1078