Carg13759 (gene) Silver-seed gourd

Overview
NameCarg13759
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDof zinc finger protein
LocationCucurbita_argyrosperma_scaffold_058 : 398360 .. 399094 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGAGTTCGAAACAGGTTTCGATCGATGTATTTGATTGGAGCAAGACGCTTACGCCGCCACAGAAACTGTCAAGCGCCGCCGTGAAACGATCGCACCACCACCAAAATCCGTCACAAACTGAGCAATTAAAGTGCCCAAGATGCGATTCAACCAACACCAAATTCTGTTACTACAATAATTACAACAAATCTCAGCCGCGCCATTTTTGTAGAGCTTGTAAACGTCACTGGACCAATGGTGGAACTCTCCGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAACGCTTAAAAAAAAAACCAATCCCCAAATCCTCCTCCTCCGCCATCGCCTCCGCCGCCGTCGCCGCCGCAGACGGCGTAATGATAAACACCCAATTTTCCCTTCCTCTGTATCAAGGGCTGATTTTCCCTCCGCCGCCGCCACCGCCGCCGCCGTCGTCGACCAACTGGGTGGAATGTGAAAACTTCACTACAAATTACGGAATTCTCAATTCCCAAAACGCAGATTTCTCTGGCGTTTCAACAACAACAGATCAAGAATTGAAGGCCATAGAAACAGAGCAACCCAACAGCACCAGTACACATCATCCATGGCAGCTTCCAACCACCAACTGCAGCGGCGCCGACATGTCGAACAGCAGCTACTGGAGCTGGGAAGACATCGACACCTTCGCCACAACGGATCTCAACATCCTATGGGACGACGACCACGACATCAAACCTTAA

mRNA sequence

ATGGGTTTGAGTTCGAAACAGGTTTCGATCGATGTATTTGATTGGAGCAAGACGCTTACGCCGCCACAGAAACTGTCAAGCGCCGCCGTGAAACGATCGCACCACCACCAAAATCCGTCACAAACTGAGCAATTAAAGTGCCCAAGATGCGATTCAACCAACACCAAATTCTGTTACTACAATAATTACAACAAATCTCAGCCGCGCCATTTTTGTAGAGCTTGTAAACGTCACTGGACCAATGGTGGAACTCTCCGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAACGCTTAAAAAAAAAACCAATCCCCAAATCCTCCTCCTCCGCCATCGCCTCCGCCGCCGTCGCCGCCGCAGACGGCGTAATGATAAACACCCAATTTTCCCTTCCTCTGTATCAAGGGCTGATTTTCCCTCCGCCGCCGCCACCGCCGCCGCCGTCGTCGACCAACTGGGTGGAATGTGAAAACTTCACTACAAATTACGGAATTCTCAATTCCCAAAACGCAGATTTCTCTGGCGTTTCAACAACAACAGATCAAGAATTGAAGGCCATAGAAACAGAGCAACCCAACAGCACCAGTACACATCATCCATGGCAGCTTCCAACCACCAACTGCAGCGGCGCCGACATGTCGAACAGCAGCTACTGGAGCTGGGAAGACATCGACACCTTCGCCACAACGGATCTCAACATCCTATGGGACGACGACCACGACATCAAACCTTAA

Coding sequence (CDS)

ATGGGTTTGAGTTCGAAACAGGTTTCGATCGATGTATTTGATTGGAGCAAGACGCTTACGCCGCCACAGAAACTGTCAAGCGCCGCCGTGAAACGATCGCACCACCACCAAAATCCGTCACAAACTGAGCAATTAAAGTGCCCAAGATGCGATTCAACCAACACCAAATTCTGTTACTACAATAATTACAACAAATCTCAGCCGCGCCATTTTTGTAGAGCTTGTAAACGTCACTGGACCAATGGTGGAACTCTCCGAAACGTCCCTGTTGGTGGCGGCCGTAAAAACAAACGCTTAAAAAAAAAACCAATCCCCAAATCCTCCTCCTCCGCCATCGCCTCCGCCGCCGTCGCCGCCGCAGACGGCGTAATGATAAACACCCAATTTTCCCTTCCTCTGTATCAAGGGCTGATTTTCCCTCCGCCGCCGCCACCGCCGCCGCCGTCGTCGACCAACTGGGTGGAATGTGAAAACTTCACTACAAATTACGGAATTCTCAATTCCCAAAACGCAGATTTCTCTGGCGTTTCAACAACAACAGATCAAGAATTGAAGGCCATAGAAACAGAGCAACCCAACAGCACCAGTACACATCATCCATGGCAGCTTCCAACCACCAACTGCAGCGGCGCCGACATGTCGAACAGCAGCTACTGGAGCTGGGAAGACATCGACACCTTCGCCACAACGGATCTCAACATCCTATGGGACGACGACCACGACATCAAACCTTAA

Protein sequence

MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRKNKRLKKKPIPKSSSSAIASAAVAAADGVMINTQFSLPLYQGLIFPPPPPPPPPSSTNWVECENFTTNYGILNSQNADFSGVSTTTDQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP
Homology
[Close]
BLAST of Carg13759 vs. NCBI nr
Match: XP_022950407.1 (dof zinc finger protein MNB1A-like [Cucurbita moschata])

HSP 1 Score: 419.1 bits (1076), Expect = 1.0e-113
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60
           MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60

Query: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 DGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT 180
           DGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT
Sbjct: 121 DGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT 180

Query: 181 DQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDH 240
           DQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDD+H
Sbjct: 181 DQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDNH 240

Query: 241 DIKP 245
           DIKP
Sbjct: 241 DIKP 244

[Close]
BLAST of Carg13759 vs. NCBI nr
Match: XP_023544607.1 (dof zinc finger protein MNB1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-109
Identity = 238/244 (97.54%), Postives = 239/244 (97.95%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60
           MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60

Query: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NNYNKSQPRHFCRACKRHWTNGGTLRNVPVG   XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVG---XXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 DGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT 180
            GVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT
Sbjct: 121 XGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTTT 180

Query: 181 DQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDH 240
           DQELKAIETEQPN+T THHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDH
Sbjct: 181 DQELKAIETEQPNTTGTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDH 240

Query: 241 DIKP 245
           DIKP
Sbjct: 241 DIKP 241

[Close]
BLAST of Carg13759 vs. NCBI nr
Match: XP_022978891.1 (dof zinc finger protein DOF5.3-like [Cucurbita maxima])

HSP 1 Score: 391.0 bits (1003), Expect = 3.0e-105
Identity = 231/245 (94.29%), Postives = 237/245 (96.73%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60
           MGLSSKQVSIDVFDWSKTLTPP+KL+SAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY
Sbjct: 1   MGLSSKQVSIDVFDWSKTLTPPKKLTSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYY 60

Query: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVG-GGRXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NNYNKSQPRHFCRACKRHWTNGGTLRNVPVG    XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NNYNKSQPRHFCRACKRHWTNGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XDGVMINTQFSLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNADFSGVSTT 180
           XDGVMINTQFSLPLYQGLI  XXXXXXXXXXXNW+ECENFTTNYGILNSQNADFSGVSTT
Sbjct: 121 XDGVMINTQFSLPLYQGLI--XXXXXXXXXXXNWLECENFTTNYGILNSQNADFSGVSTT 180

Query: 181 TDQELKAIETEQPNSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDD 240
           TDQ+LKAIETEQPN+T THHPWQLPTT+CSGADMSNSSYWSWEDIDTFATTDLNILWD D
Sbjct: 181 TDQKLKAIETEQPNTTGTHHPWQLPTTSCSGADMSNSSYWSWEDIDTFATTDLNILWDVD 240

Query: 241 HDIKP 245
           HDIKP
Sbjct: 241 HDIKP 243

[Close]
BLAST of Carg13759 vs. NCBI nr
Match: XP_008439887.1 (PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 1.7e-71
Identity = 186/273 (68.13%), Postives = 194/273 (71.06%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHH---HQNPSQTEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXX 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVG   XXXXXXXXXXXXXXXXX
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXDGVMINTQF------SLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGI 180
           XXXXXXXXXD  +IN Q       +LPLYQGLI             NW ECENFTTNYGI
Sbjct: 121 XXXXXXXXXD--LINPQMDVHHFQNLPLYQGLI------FSPPSSSNWAECENFTTNYGI 180

Query: 181 LNSQNADFSGVSTTT--------------DQELKAIETEQPNSTSTHHPWQLPTTNCSGA 240
           LNSQN DFS VSTTT              DQELK  ETEQP    THHPWQLP+T C   
Sbjct: 181 LNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQP----THHPWQLPSTGCGIG 240

Query: 241 DMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
           DMS SSYWSW+DI+TF  TDLNI WDD+HDIKP
Sbjct: 241 DMS-SSYWSWDDINTFTATDLNIPWDDEHDIKP 260

[Close]
BLAST of Carg13759 vs. NCBI nr
Match: XP_004134958.1 (PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis sativus] >KGN49207.1 hypothetical protein Csa_6G517150 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 8.4e-71
Identity = 184/273 (67.40%), Postives = 193/273 (70.70%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHHH---QNPSQTEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H    Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQIQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXX 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVG   XXXXXXXXXXXXXXXXX
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXDGVMINTQF------SLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGI 180
           XXXXXXXXXD  +IN Q       +LPLYQGLI             NW ECENFTTNYGI
Sbjct: 121 XXXXXXXXXD--LINPQMDVHHFQNLPLYQGLI------FSPPSSSNWAECENFTTNYGI 180

Query: 181 LNSQNADFSGVSTTT--------------DQELKAIETEQPNSTSTHHPWQLPTTNCSGA 240
           LNSQN DFS VSTTT              D+ELK  ETEQP    THHPWQLP+T C   
Sbjct: 181 LNSQNPDFSAVSTTTSTHSPISPKFNNYSDKELKPTETEQP----THHPWQLPSTGCGIG 240

Query: 241 DMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
           DMSN SYW+W+DI+TF  TDLNI WDD+HDIKP
Sbjct: 241 DMSN-SYWTWDDINTFTATDLNIPWDDEHDIKP 260

[Close]
BLAST of Carg13759 vs. TAIR10
Match: AT3G50410.1 (OBF binding protein 1)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-23
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 41 QTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
          Q EQL CPRCDS+NTKFCYYNNYN SQPRHFC+AC+R+WT+GGTLR+VPVGGG
Sbjct: 26 QQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGG 78

[Close]
BLAST of Carg13759 vs. TAIR10
Match: AT3G21270.1 (DOF zinc finger protein 2)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-23
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 40 SQTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
          ++ EQLKCPRCDS NTKFCYYNNYN SQPRHFC++C+R+WT GG LRNVPVGGG
Sbjct: 24 AEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGG 77

[Close]
BLAST of Carg13759 vs. TAIR10
Match: AT2G28810.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 104.8 bits (260), Expect = 7.9e-23
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 18  TLTPPQKLSSAAVKRSHHHQNPSQTE-QLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACK 77
           T   P  L+  A +R+   +N    E  LKCPRCDS NTKFCY+NNYN +QPRHFC+AC+
Sbjct: 66  TTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACR 125

Query: 78  RHWTNGGTLRNVPVGGG 94
           R+WT GG LRNVPVGGG
Sbjct: 126 RYWTRGGALRNVPVGGG 142

[Close]
BLAST of Carg13759 vs. TAIR10
Match: AT1G07640.3 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-22
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0 

Query: 22  PQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTN 81
           P ++  +  +R+     P     LKCPRCDS+NTKFCYYNNYN +QPRHFC+ C+R+WT 
Sbjct: 62  PSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQ 121

Query: 82  GGTLRNVPVGGG 94
           GG LRNVPVGGG
Sbjct: 122 GGALRNVPVGGG 133

[Close]
BLAST of Carg13759 vs. TAIR10
Match: AT1G51700.1 (DOF zinc finger protein 1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 41 QTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
          + EQLKCPRCDS NTKFCYYNNYN SQPRHFC+ C+R+WT GG LRN+PVGGG
Sbjct: 29 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGG 81

[Close]
BLAST of Carg13759 vs. Swiss-Prot
Match: sp|Q39088|DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 6.4e-22
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 41 QTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
          Q EQL CPRCDS+NTKFCYYNNYN SQPRHFC+AC+R+WT+GGTLR+VPVGGG
Sbjct: 26 QQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGG 78

[Close]
BLAST of Carg13759 vs. Swiss-Prot
Match: sp|Q94AR6|DOF31_ARATH (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 8.3e-22
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 40 SQTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
          ++ EQLKCPRCDS NTKFCYYNNYN SQPRHFC++C+R+WT GG LRNVPVGGG
Sbjct: 24 AEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGG 77

[Close]
BLAST of Carg13759 vs. Swiss-Prot
Match: sp|Q9ZV33|DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 18  TLTPPQKLSSAAVKRSHHHQNPSQTE-QLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACK 77
           T   P  L+  A +R+   +N    E  LKCPRCDS NTKFCY+NNYN +QPRHFC+AC+
Sbjct: 66  TTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACR 125

Query: 78  RHWTNGGTLRNVPVGGG 94
           R+WT GG LRNVPVGGG
Sbjct: 126 RYWTRGGALRNVPVGGG 142

[Close]
BLAST of Carg13759 vs. Swiss-Prot
Match: sp|O24463|PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = 0 

Query: 3   LSSKQVSIDVFDWSKTLTPPQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYYNN 62
           LSS  +  +  D  +T   PQ   S   K       P   E LKCPRCDS NTKFCYYNN
Sbjct: 23  LSSPIIKEEARDPKQTRAMPQIGGSGERK-----PRPQLPEALKCPRCDSNNTKFCYYNN 82

Query: 63  YNKSQPRHFCRACKRHWTNGGTLRNVPVGGG 94
           Y+ SQPR+FC+AC+R+WT+GGTLRNVP+GGG
Sbjct: 83  YSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

[Close]
BLAST of Carg13759 vs. Swiss-Prot
Match: sp|Q8L9V6|DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-21
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0 

Query: 22  PQKLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTN 81
           P ++  +  +R+     P     LKCPRCDS+NTKFCYYNNYN +QPRHFC+ C+R+WT 
Sbjct: 54  PSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQ 113

Query: 82  GGTLRNVPVGGG 94
           GG LRNVPVGGG
Sbjct: 114 GGALRNVPVGGG 125

[Close]
BLAST of Carg13759 vs. TrEMBL
Match: tr|A0A1S3AZE8|A0A1S3AZE8_CUCME (dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103484541 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 186/273 (68.13%), Postives = 194/273 (71.06%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHH---HQNPSQTEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H   +Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQNQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXX 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVG   XXXXXXXXXXXXXXXXX
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXDGVMINTQF------SLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGI 180
           XXXXXXXXXD  +IN Q       +LPLYQGLI             NW ECENFTTNYGI
Sbjct: 121 XXXXXXXXXD--LINPQMDVHHFQNLPLYQGLI------FSPPSSSNWAECENFTTNYGI 180

Query: 181 LNSQNADFSGVSTTT--------------DQELKAIETEQPNSTSTHHPWQLPTTNCSGA 240
           LNSQN DFS VSTTT              DQELK  ETEQP    THHPWQLP+T C   
Sbjct: 181 LNSQNPDFSAVSTTTSTHSPISPKFNNYSDQELKPTETEQP----THHPWQLPSTGCGIG 240

Query: 241 DMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
           DMS SSYWSW+DI+TF  TDLNI WDD+HDIKP
Sbjct: 241 DMS-SSYWSWDDINTFTATDLNIPWDDEHDIKP 260

[Close]
BLAST of Carg13759 vs. TrEMBL
Match: tr|A0A0A0KLF4|A0A0A0KLF4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517150 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.5e-71
Identity = 184/273 (67.40%), Postives = 193/273 (70.70%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS------SAAVKRSHHH---QNPSQTEQLKCPRCD 60
           MGLSSKQVSID FDWSK L   QKL       S+ VKRS H    Q   Q EQLKCPRCD
Sbjct: 1   MGLSSKQVSIDGFDWSKALMQAQKLELPKLAPSSGVKRSQHQNQIQIQPQIEQLKCPRCD 60

Query: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXX 120
           STNTKFCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVG   XXXXXXXXXXXXXXXXX
Sbjct: 61  STNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXDGVMINTQF------SLPLYQGLIXXXXXXXXXXXXXNWVECENFTTNYGI 180
           XXXXXXXXXD  +IN Q       +LPLYQGLI             NW ECENFTTNYGI
Sbjct: 121 XXXXXXXXXD--LINPQMDVHHFQNLPLYQGLI------FSPPSSSNWAECENFTTNYGI 180

Query: 181 LNSQNADFSGVSTTT--------------DQELKAIETEQPNSTSTHHPWQLPTTNCSGA 240
           LNSQN DFS VSTTT              D+ELK  ETEQP    THHPWQLP+T C   
Sbjct: 181 LNSQNPDFSAVSTTTSTHSPISPKFNNYSDKELKPTETEQP----THHPWQLPSTGCGIG 240

Query: 241 DMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
           DMSN SYW+W+DI+TF  TDLNI WDD+HDIKP
Sbjct: 241 DMSN-SYWTWDDINTFTATDLNIPWDDEHDIKP 260

[Close]
BLAST of Carg13759 vs. TrEMBL
Match: tr|A0A2C9U4V3|A0A2C9U4V3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G042800 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.7e-38
Identity = 135/310 (43.55%), Postives = 163/310 (52.58%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQK---LSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKF 60
           MGLSSKQVS D  DWS+TL    +   L    + R    QN  Q+E LKCPRCDSTNTKF
Sbjct: 1   MGLSSKQVSSDGLDWSQTLLQQARTLELPKPPIVRGQQQQNQQQSEPLKCPRCDSTNTKF 60

Query: 61  CYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGR---XXXXXXXXXXXXXXXXXXXX 120
           CYYNNYNKSQPRHFC+ CKRHWT GGTLRNVP+GGGR          XXXXXXXXXXXXX
Sbjct: 61  CYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPIGGGRKNKRLKTSKNXXXXXXXXXXXXX 120

Query: 121 XXXXXXDGVMIN------------TQFSLPLYQG--------LIXXXXXXXXXXXXXNWV 180
           XXXXXX G +IN             + +LPL  G        +              N +
Sbjct: 121 XXXXXXXGSIINRVNPQIVIQAQHQKQNLPLAHGDQKSVSEIMCQAMISPPSLALQQNSM 180

Query: 181 ECENF------TTNYGIL--------NSQNADFSGVSTTT-------------------- 240
            C NF      T N G+          +Q   F   S++T                    
Sbjct: 181 SCSNFSSKSFNTGNSGVFLGSTLSLPQNQGLHFPYSSSSTFDTHPSLISTSLQSSNLYNY 240

Query: 241 ----DQELKAIETEQP--NSTSTHHPWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNI 245
                 E   I T  P  ++T +H PWQ+P  +C G DM  +SYW+W+DIDTF +T+LN+
Sbjct: 241 RSGEAMEDSTITTVMPATSNTISHQPWQVPNASC-GMDM--TSYWNWDDIDTFVSTNLNV 300

[Close]
BLAST of Carg13759 vs. TrEMBL
Match: tr|A0A1J7GPC3|A0A1J7GPC3_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_13077 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.8e-37
Identity = 123/286 (43.01%), Postives = 145/286 (50.70%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQKLS----SAAVKRSHHHQNPSQTEQLKCPRCDSTNTK 60
           MGLSS QVS     W  TL   Q L       ++++ HHH    Q E +KCPRCDSTNTK
Sbjct: 1   MGLSSNQVSNRRVGWDPTLLEAQNLELPQLHDSMRKQHHHN--QQPEFVKCPRCDSTNTK 60

Query: 61  FCYYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXX 120
           FCYYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGGGR            XXXXXXXXXX
Sbjct: 61  FCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPTTPLXXXXXXXXXX 120

Query: 121 XXXXDGVMINTQFSLP--LYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNSQNA--- 180
           XXXX           P  LYQ LI                E ++F    GI  S +    
Sbjct: 121 XXXXXXXXXXXHKGKPTSLYQPLICPQPSMDNIICTTRDSEDKDFGIGNGIFLSSSIMPH 180

Query: 181 --------DFSGVSTTTDQELKAIETEQPNSTSTHH------------------------ 240
                    FS  S++ D    +I T  P+S   ++                        
Sbjct: 181 TENQSMIFPFSTTSSSFDTNPCSISTSLPSSNVYNYGEEFKTMEESTINSMMPITSGNNT 240

Query: 241 -PWQLPTTNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
             W++      G  MS S+YWSWEDID+F +TD+N+ WDDD D+KP
Sbjct: 241 PQWEIMPATGIGMGMS-SNYWSWEDIDSFVSTDINVPWDDDSDVKP 283

[Close]
BLAST of Carg13759 vs. TrEMBL
Match: tr|G7IPR3|G7IPR3_MEDTR (Dof domain zinc finger protein OS=Medicago truncatula OX=3880 GN=11446803 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.4e-36
Identity = 129/279 (46.24%), Postives = 149/279 (53.41%), Query Frame = 0 

Query: 1   MGLSSKQVSIDVFDWSKTLTPPQ--KLSSAAVKRSHHHQNPSQTEQLKCPRCDSTNTKFC 60
           MGLSSKQVS    DW++TL   Q  +L      R    QN  Q E + CPRCDSTNTKFC
Sbjct: 1   MGLSSKQVSSRGVDWNQTLLQDQNLELPKTLPMRKQQQQN-HQLEAVNCPRCDSTNTKFC 60

Query: 61  YYNNYNKSQPRHFCRACKRHWTNGGTLRNVPVGGGRXXXXXXXXXXXXXXXXXXXXXXXX 120
           YYNNYNKSQPRHFCRACKRHWT GGTLRNVPVGG R           XXXXXXXXXXXXX
Sbjct: 61  YYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSIXXXXXXXXXXXXX 120

Query: 121 XXDGVMINTQFSLP--LYQGLIXXXXXXXXXXXXXNWVECENFTTNYGILNS-------- 180
           XX       + + P  +++ LI                + E     +GI N         
Sbjct: 121 XXXXXNRLNKKNTPSSMHESLIHPPSFLPPQNLISTKDQSEGNNEEFGIGNGMFLSSSMP 180

Query: 181 --QNAD----FSGVSTTT--------DQELKAIETEQPN---------STSTHHPWQLPT 240
             QN      FS  ST          D+E K +E    N         S +   PW++P 
Sbjct: 181 FHQNQSFIFPFSNSSTLRSNNGYNYGDEEFKIMEESTINNSAMPSTSGSGTITQPWEIPA 240

Query: 241 TNCSGADMSNSSYWSWEDIDTFATTDLNILWDDDHDIKP 245
           T+ SG DMSN  YWSWEDID+  +TDLN+ WDD  DIKP
Sbjct: 241 TS-SGMDMSN--YWSWEDIDSLVSTDLNVPWDDS-DIKP 274

The following BLAST results are available for this feature:
BLAST of Carg13759 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950407.11.0e-11399.59dof zinc finger protein MNB1A-like [Cucurbita moschata][more]
XP_023544607.12.7e-10997.54dof zinc finger protein MNB1A-like [Cucurbita pepo subsp. pepo][more]
XP_022978891.13.0e-10594.29dof zinc finger protein DOF5.3-like [Cucurbita maxima][more]
XP_008439887.11.7e-7168.13PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis melo][more]
XP_004134958.18.4e-7167.40PREDICTED: dof zinc finger protein DOF1.4-like [Cucumis sativus] >KGN49207.1 hyp... [more]
BLAST of Carg13759 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50410.13.5e-2383.02OBF binding protein 1[more]
AT3G21270.14.6e-2379.63DOF zinc finger protein 2[more]
AT2G28810.17.9e-2361.04Dof-type zinc finger DNA-binding family protein[more]
AT1G07640.31.0e-2259.72Dof-type zinc finger DNA-binding family protein[more]
AT1G51700.11.8e-2279.25DOF zinc finger protein 1[more]
BLAST of Carg13759 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q39088|DOF34_ARATH6.4e-2283.02Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV... [more]
sp|Q94AR6|DOF31_ARATH8.3e-2279.63Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV... [more]
sp|Q9ZV33|DOF22_ARATH1.4e-2161.04Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV... [more]
sp|O24463|PBF_MAIZE1.4e-2156.04Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1[more]
sp|Q8L9V6|DOF11_ARATH1.9e-2159.72Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV... [more]
BLAST of Carg13759 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZE8|A0A1S3AZE8_CUCME1.1e-7168.13dof zinc finger protein DOF1.4-like OS=Cucumis melo OX=3656 GN=LOC103484541 PE=4... [more]
tr|A0A0A0KLF4|A0A0A0KLF4_CUCSA5.5e-7167.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517150 PE=4 SV=1[more]
tr|A0A2C9U4V3|A0A2C9U4V3_MANES4.7e-3843.55Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G042800 PE=4 SV=... [more]
tr|A0A1J7GPC3|A0A1J7GPC3_LUPAN6.8e-3743.01Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_13077 PE=4 S... [more]
tr|G7IPR3|G7IPR3_MEDTR4.4e-3646.24Dof domain zinc finger protein OS=Medicago truncatula OX=3880 GN=11446803 PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13759-RACarg13759-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 43..97
e-value: 1.4E-31
score: 108.3
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 47..83
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 31..90
e-value: 2.0E-20
score: 244.0
IPR003851Zinc finger, Dof-typePROSITEPS50884ZF_DOF_2coord: 45..99
score: 27.419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..106
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 166..234
coord: 1..120
NoneNo IPR availablePANTHERPTHR31992:SF81SUBFAMILY NOT NAMEDcoord: 166..234
coord: 1..120

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13759Cla001373Watermelon (97103) v1carwmB0931
Carg13759Csa6G517150Cucumber (Chinese Long) v2carcuB0948
Carg13759MELO3C007304Melon (DHL92) v3.5.1carmeB0918
Carg13759ClCG01G022770Watermelon (Charleston Gray)carwcgB0906
Carg13759CSPI06G34410Wild cucumber (PI 183967)carcpiB0971
Carg13759Cucsa.046040Cucumber (Gy14) v1carcgyB1047
Carg13759CmaCh03G004770Cucurbita maxima (Rimu)carcmaB1276
Carg13759CmoCh03G004940Cucurbita moschata (Rifu)carcmoB1246
Carg13759Lsi01G003360Bottle gourd (USVL1VR-Ls)carlsiB846
Carg13759Cp4.1LG10g08970Cucurbita pepo (Zucchini)carcpeB1288
Carg13759CsGy6G033970Cucumber (Gy14) v2carcgybB0922
Carg13759MELO3C007304.2Melon (DHL92) v3.6.1carmedB0925
Carg13759CsaV3_6G049930Cucumber (Chinese Long) v3carcucB0972
Carg13759Cla97C01G022650Watermelon (97103) v2carwmbB0972
Carg13759Bhi03G000343Wax gourdcarwgoB1075
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13759Silver-seed gourdcarcarB037
Carg13759Silver-seed gourdcarcarB563
Carg13759Cucurbita maxima (Rimu)carcmaB1279
Carg13759Cucurbita moschata (Rifu)carcmoB1245
Carg13759Cucurbita moschata (Rifu)carcmoB1250
Carg13759Cucurbita pepo (Zucchini)carcpeB1289
Carg13759Cucurbita pepo (Zucchini)carcpeB1291
Carg13759Wild cucumber (PI 183967)carcpiB0968
Carg13759Cucumber (Chinese Long) v3carcucB0969
Carg13759Bottle gourd (USVL1VR-Ls)carlsiB848
Carg13759Melon (DHL92) v3.6.1carmedB0921
Carg13759Watermelon (Charleston Gray)carwcgB0908
Carg13759Watermelon (97103) v1carwmB0930
Carg13759Watermelon (97103) v2carwmbB0976