Carg13758 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13758
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TMV resistance protein like
Location	Cucurbita_argyrosperma_scaffold_058 : 394027 .. 394672 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACGGTCACCGGCGGCGGTGAAGGCCACGCACCTGTGCGCCAAAATTAAAAACAGAATTAAAAACAGAATCAAAACGGAATCCCCAGATTTCGACGTGTTCATAAGCCACCGTGGAATCGACACAAGACGGAGCGTGGCCGGAATATTGCACGAGCATTTCTCCGGCTTGGGGCTGCGGCCATTTCTCGACGTCAAGTCCATGTCCCCCGGCGACAATCTAATTGGCAAAATTGACTCCGCCATCCGAAGCTGCAGGGTCGGAGTACCGGTTTTTTCGCCTCGGTATTGCGAGTCCTATTACTGTCTCTATGAGCTGGCTCGTATGCTGCGATCCAATAAATGGATCGTGCCGATTTTTTGGAATGTGAAGCCGTCGGAGCTCCGTGTAGCCGATGAAAATAAAAGGCTCAGCCGCTTCGCTTGGGCCGTTGAGGAAGCTAAGTGTACTGTCGGCTTGTCTTTTGACTCCACAAATGGGTACAATTTAAATTTATCCTAATAAATAATTTTGTAATAAATATATATATTTTTTCTAATGTAATTTTATTATTATTATTATTTTGGTGTGCAGTGATTGGTCGGAGCTGCTCACCAGTGTTTCAGGTGCAGCGATGAAGTTGGTCGAGGAAGATGAAAGATAA

mRNA sequence

ATGCAACGGTCACCGGCGGCGGTGAAGGCCACGCACCTGTGCGCCAAAATTAAAAACAGAATTAAAAACAGAATCAAAACGGAATCCCCAGATTTCGACGTGTTCATAAGCCACCGTGGAATCGACACAAGACGGAGCGTGGCCGGAATATTGCACGAGCATTTCTCCGGCTTGGGGCTGCGGCCATTTCTCGACGTCAAGTCCATGTCCCCCGGCGACAATCTAATTGGCAAAATTGACTCCGCCATCCGAAGCTGCAGGGTCGGAGTACCGGTTTTTTCGCCTCGGTATTGCGAGTCCTATTACTGTCTCTATGAGCTGGCTCGTATGCTGCGATCCAATAAATGGATCGTGCCGATTTTTTGGAATGTGAAGCCGTCGGAGCTCCGTGTAGCCGATGAAAATAAAAGGCTCAGCCGCTTCGCTTGGGCCGTTGAGGAAGCTAAGTGTACTGTCGGCTTGTCTTTTGACTCCACAAATGGTGATTGGTCGGAGCTGCTCACCAGTGTTTCAGGTGCAGCGATGAAGTTGGTCGAGGAAGATGAAAGATAA

Coding sequence (CDS)

ATGCAACGGTCACCGGCGGCGGTGAAGGCCACGCACCTGTGCGCCAAAATTAAAAACAGAATTAAAAACAGAATCAAAACGGAATCCCCAGATTTCGACGTGTTCATAAGCCACCGTGGAATCGACACAAGACGGAGCGTGGCCGGAATATTGCACGAGCATTTCTCCGGCTTGGGGCTGCGGCCATTTCTCGACGTCAAGTCCATGTCCCCCGGCGACAATCTAATTGGCAAAATTGACTCCGCCATCCGAAGCTGCAGGGTCGGAGTACCGGTTTTTTCGCCTCGGTATTGCGAGTCCTATTACTGTCTCTATGAGCTGGCTCGTATGCTGCGATCCAATAAATGGATCGTGCCGATTTTTTGGAATGTGAAGCCGTCGGAGCTCCGTGTAGCCGATGAAAATAAAAGGCTCAGCCGCTTCGCTTGGGCCGTTGAGGAAGCTAAGTGTACTGTCGGCTTGTCTTTTGACTCCACAAATGGTGATTGGTCGGAGCTGCTCACCAGTGTTTCAGGTGCAGCGATGAAGTTGGTCGAGGAAGATGAAAGATAA

Protein sequence

MQRSPAAVKATHLCAKIKNRIKNRIKTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPIFWNVKPSELRVADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMKLVEEDER

Homology

[Close]

BLAST of Carg13758 vs. NCBI nr
Match: XP_022950368.1 (toll/interleukin-1 receptor-like protein [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 2.4e-94
Identity = 174/183 (95.08%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIKNRXXXXXXTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL 60
           MQRSPAAVKATHLCAKIKNR      TESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL
Sbjct: 1   MQRSPAAVKATHLCAKIKNR----IKTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL 60

Query: 61  RPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI 120
            PFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI
Sbjct: 61  WPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI 120

Query: 121 FWNVKPSELRVADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMKLVEE 180
           FWNVKPSELRVADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELL+SVSGA MKLVEE
Sbjct: 121 FWNVKPSELRVADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLSSVSGAVMKLVEE 179

Query: 181 DER 184
           DER
Sbjct: 181 DER 179

[Close]

BLAST of Carg13758 vs. NCBI nr
Match: XP_023003829.1 (TMV resistance protein N-like [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 4.8e-55
Identity = 116/195 (59.49%), Postives = 146/195 (74.87%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIK---NRXXXXXXTE--------SPDFDVFISHRGIDTRRSVAG 60
           MQRS  A KA H CAK+    N+      +E         P FDVFIS+RG DTRR++AG
Sbjct: 3   MQRSILA-KAKHACAKLSSVYNKGSMIKLSERQVISTKNQPPFDVFISYRGTDTRRTIAG 62

Query: 61  ILHEHFSGLG-LRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELA 120
           +L++H S +G LRPFLD KS+SPGDN++ KI +A+++CRVG+PVFSPRYCESYYCLYELA
Sbjct: 63  LLYDHLSHVGQLRPFLDYKSLSPGDNIMDKISAAVKTCRVGLPVFSPRYCESYYCLYELA 122

Query: 121 RMLRSNKWIVPIFWNVKPSELRV-ADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELL 180
            M R++K IVPIF ++KPS+LRV +D +  L  FAWA++EAK TVGLSFDSTNGDWSELL
Sbjct: 123 LMYRTSKCIVPIFCDMKPSQLRVPSDRSSTLQCFAWALDEAKETVGLSFDSTNGDWSELL 182

Query: 181 TSVSGAAMKLVEEDE 183
           T+ S A  K++E  E
Sbjct: 183 TNASDAVRKMLEGSE 196

[Close]

BLAST of Carg13758 vs. NCBI nr
Match: XP_022926604.1 (TMV resistance protein N-like [Cucurbita moschata])

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 114/195 (58.46%), Postives = 142/195 (72.82%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIK-----------NRXXXXXXTESPDFDVFISHRGIDTRRSVAG 60
           MQRS  A KA H CAK+            N          P FDVFIS+RG DTRR++AG
Sbjct: 3   MQRSILA-KAKHACAKLSGVYNKGSIIKLNERQVISTKNQPPFDVFISYRGTDTRRTIAG 62

Query: 61  ILHEHFSGLG-LRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELA 120
           +L++H   +G LRPFLD KS+SPGDN++ KI +A+++CRVG+PVFSPRYCESYYCLYELA
Sbjct: 63  LLYDHLYHVGQLRPFLDYKSLSPGDNIMDKISAAVKTCRVGLPVFSPRYCESYYCLYELA 122

Query: 121 RMLRSNKWIVPIFWNVKPSELRV-ADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELL 180
            M R++K IVPIF ++KPS+LRV +D +  L  FAWA++EAK TVGLSFDSTNGDWSELL
Sbjct: 123 LMYRTSKCIVPIFCDMKPSQLRVPSDRSSTLQCFAWALDEAKETVGLSFDSTNGDWSELL 182

Query: 181 TSVSGAAMKLVEEDE 183
           T+ S A  K++E  E
Sbjct: 183 TNASDAVRKMLEASE 196

[Close]

BLAST of Carg13758 vs. NCBI nr
Match: XP_023517713.1 (TMV resistance protein N-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 114/195 (58.46%), Postives = 144/195 (73.85%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIK---NRXXXXXXTE--------SPDFDVFISHRGIDTRRSVAG 60
           MQRS  A KA H CAK+    N+      +E         P FDVFIS+RG DTRR++AG
Sbjct: 3   MQRSILA-KAKHACAKLSSVYNKGSIIKLSERQVISTKNQPPFDVFISYRGTDTRRTIAG 62

Query: 61  ILHEHFSGLG-LRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELA 120
           +L++H   +G L PFLD KS+SPGDN++ KI +A+++CRVG+PVFSPRYCESYYCLYELA
Sbjct: 63  LLYDHLYHVGQLHPFLDYKSLSPGDNIMDKISAAVKTCRVGLPVFSPRYCESYYCLYELA 122

Query: 121 RMLRSNKWIVPIFWNVKPSELRV-ADENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELL 180
            M R++K IVPIF ++KPS+LRV +D +  L  FAWA++EAK TVGLSFDSTNGDWSELL
Sbjct: 123 LMYRTSKCIVPIFCDMKPSQLRVPSDRSSTLQCFAWALDEAKETVGLSFDSTNGDWSELL 182

Query: 181 TSVSGAAMKLVEEDE 183
           T+ S A  K++E  E
Sbjct: 183 TNASDAVRKMLEASE 196

[Close]

BLAST of Carg13758 vs. NCBI nr
Match: XP_023924751.1 (disease resistance protein LAZ5-like [Quercus suber])

HSP 1 Score: 204.1 bits (518), Expect = 4.0e-49
Identity = 102/186 (54.84%), Postives = 132/186 (70.97%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIKNRXXXXXXTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL 60
           MQRSPA +K+      + +       T S   DVFI+HRGIDT+R+VAG+L+ H SG+GL
Sbjct: 1   MQRSPALIKSLISSKILHSLPKSQTRTISRSCDVFINHRGIDTKRTVAGLLYNHLSGMGL 60

Query: 61  RPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI 120
           +PFLD ++M PGD L  KID AI + ++GV VFSPRYCESY+CL+ELA ++ S K ++PI
Sbjct: 61  KPFLDSQNMKPGDKLFDKIDKAILNSKLGVAVFSPRYCESYFCLHELALIMESKKRVIPI 120

Query: 121 FWNVKPSELRVADEN----KRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMK 180
           F +VKPS+LRV D      K L RF WA+EEAK TVGL+FD++ GDWSE L + S A MK
Sbjct: 121 FCDVKPSQLRVKDYGICPAKELQRFTWALEEAKYTVGLTFDTSRGDWSEFLRNASDAVMK 180

Query: 181 -LVEED 182
            L+E D
Sbjct: 181 NLLEVD 186

[Close]

BLAST of Carg13758 vs. TAIR10
Match: AT1G61105.1 (Toll-Interleukin-Resistance (TIR) domain family protein)

HSP 1 Score: 174.1 bits (440), Expect = 7.9e-44
Identity = 83/156 (53.21%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 33  DVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPV 92
           D+FI+HRGIDT+++++G+L++ F+   L  FLD KS+ PGD L  +ID AI++C VG+ V
Sbjct: 30  DIFINHRGIDTKKTISGLLYDCFTRQRLTAFLDSKSLKPGDRLFVEIDMAIKACGVGIAV 89

Query: 93  FSPRYCESYYCLYELARMLRSNKWIVPIFWNVKPSELRVADENKR----LSRFAWAVEEA 152
           FSPRYC+SY+CL+ELA ++++ K ++PIF +VKPSEL V D+  R    + RF  A+EEA
Sbjct: 90  FSPRYCDSYFCLHELALLVKNKKRVIPIFCDVKPSELCVKDDKTRPAAEIRRFQLALEEA 149

Query: 153 KCTVGLSFDSTNGDWSELLTSVSGAAMK-LVEEDER 184
           K TVGL+FD++NGDWSE L   S A  K L+E +ER
Sbjct: 150 KYTVGLTFDTSNGDWSEFLAMASDAVTKNLLEVEER 185

[Close]

BLAST of Carg13758 vs. TAIR10
Match: AT1G52900.1 (Toll-Interleukin-Resistance (TIR) domain family protein)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-37
Identity = 73/155 (47.10%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 33  DVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPV 92
           DVFI+HRG DT+R++A +L+++     LRPFLD K+M PGD L   I++AI + +V V V
Sbjct: 39  DVFINHRGSDTKRNIATLLYDNLKSRNLRPFLDSKNMKPGDKLFDHINNAILTSKVAVTV 98

Query: 93  FSPRYCESYYCLYELARMLRSNKWIVPIFWNVKPSEL-----RVADENKRLSRFAWAVEE 152
           FSP YC+SY+CL+ELA ++ S K ++PIF ++KPS+L     RV   +  + RF WA++E
Sbjct: 99  FSPNYCDSYFCLHELALIMESRKRVIPIFCDIKPSQLDVMIERVTCSDDEIQRFRWALQE 158

Query: 153 AKCTVGLSFDSTNGDWSELLTSVSGAAMKLVEEDE 183
           AK  VGL+FDS  G+ SE++T  S   ++ + E E
Sbjct: 159 AKDIVGLTFDSYKGNLSEVVTVASDVIVERLVELE 193

[Close]

BLAST of Carg13758 vs. TAIR10
Match: AT4G09430.1 (Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-15
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 27  TESPDFDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSC 86
           T   ++DVF+S RG DTR ++   LH+    +G+R F D K +  GD +  K+ +AI++ 
Sbjct: 10  TRVKEYDVFLSFRGADTRNNIVSYLHKALVDVGIRTFKDDKELEEGDIISEKLVNAIQTS 69

Query: 87  RVGVPVFSPRYCESYYCLYELARM----LRSNKWIVPIFWNVKPSELR 131
              V V S +Y  S +CL EL  +    ++ +  +VPIF+ V+PS++R
Sbjct: 70  WFAVVVLSEKYVTSSWCLEELRHIMELSIQDDIIVVPIFYKVEPSDVR 117

[Close]

BLAST of Carg13758 vs. TAIR10
Match: AT1G72860.1 (Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 32  FDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVP 91
           +DVF+S RG DTR+++   LH+     G+  F D K +  GD++  +I  AI++    + 
Sbjct: 12  YDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYALV 71

Query: 92  VFSPRYCESYYCLYELARM----LRSNKWIVPIFWNVKPSELRVADENKRLSRFAWAVEE 151
           + S  Y  S +CL EL  +    L++   +VPIF+ V PS +R    +    ++  +   
Sbjct: 72  ILSENYASSSWCLDELRMVMDLHLKNKIKVVPIFYGVDPSHVRHQTGSFTFDKYQDSKMP 131

Query: 152 AKCTVGLSFDSTNGDWSELLTSVSGAAMKLVE--EDE 183
            K T           W E LT ++  A K  E  EDE
Sbjct: 132 NKVTT----------WREALTQIASLAGKDFETCEDE 158

[Close]

BLAST of Carg13758 vs. TAIR10
Match: AT1G17615.1 (Disease resistance protein (TIR-NBS class))

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 0


Query: 32  FDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVP 91
           FDVF+S RG DTRR+    L++    +G+R F D   +  G  +   + +AI + ++ V 
Sbjct: 15  FDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAVV 74

Query: 92  VFSPRYCESYYCLYELARMLRSNK----WIVPIFWNVKPSELRVADENKRLSRFAWAVEE 151
           + S  Y  S +CL EL  ++   K     ++PIF+NV+P+ +R   E           ++
Sbjct: 75  IISKNYSASPWCLQELVMIMDVEKKGSIIVMPIFYNVEPAHVRRQIEQ--------VAKQ 134

Query: 152 AKCTVGLSFDSTNGDWSELLT---SVSGAAMKLVEEDER 184
            +   G     T   W + LT   S+SG   +  E+D +
Sbjct: 135 FRKHEGRENYETVVSWRQALTNLASISGHCSRDCEDDSK 165

[Close]

BLAST of Carg13758 vs. Swiss-Prot
Match: sp|Q40392|TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.1e-13
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 32  FDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVP 91
           +DVF+S RG DTR++    L+E  +  G++ F D K +  G  + G++  AI   +  + 
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 92  VFSPRYCESYYCLYELARML----RSNKWIVPIFWNVKPSELRVADENKRLSRFAWAVEE 148
           VFS  Y  S +CL EL +++    R  + ++PIF++V PS +R   E+     FA A EE
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKES-----FAKAFEE 126

[Close]

BLAST of Carg13758 vs. Swiss-Prot
Match: sp|Q9SZ66|DSC1_ARATH (Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 49/156 (31.41%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 29  SPDFDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRV 88
           S +FDVF+S RG DTR +  G L +     G+  F+D + +  GDNL    D  I   ++
Sbjct: 8   SAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDR-LRRGDNLTALFD-RIEKSKI 67

Query: 89  GVPVFSPRYCESYYCLYELARMLR----SNKWIVPIFWNVKPSELRVADENKRLSRFAWA 148
            + VFS  Y  S +CL EL ++L     + + +VPIF+ V  S     D  K+ + FA  
Sbjct: 68  AIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKS-----DVEKQRNSFAVP 127

Query: 149 VEEAKCTVGLSFDSTNGDWSELLTSVSGAAMKLVEE 181
            +  + T           W   L S S     +V+E
Sbjct: 128 FKLPELTFPGVTPEEISSWKAALASASNILGYVVKE 156

[Close]

BLAST of Carg13758 vs. Swiss-Prot
Match: sp|F4JNB7|RPP5_ARATH (Disease resistance protein RPP5 OS=Arabidopsis thaliana OX=3702 GN=RPP5 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 44/151 (29.14%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 32  FDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVP 91
           +DVF S  G+D R++    L E   G  +  F+D   +     +  ++ SAIR  R+ + 
Sbjct: 12  YDVFPSFSGVDVRKTFLSHLIEALDGKSINTFID-HGIERSRTIAPELISAIREARISIV 71

Query: 92  VFSPRYCESYYCLYELARMLRS----NKWIVPIFWNVKPSELRVADENKRLSRFAWAVEE 151
           +FS  Y  S +CL EL  + +      + ++P+F++V PSE+R     K+   F    E+
Sbjct: 72  IFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVR-----KQTGEFGKVFEK 131

Query: 152 AKCTVGLSFDSTNGD----WSELLTSVSGAA 175
              T  +S D   GD    W + LT ++  A
Sbjct: 132 ---TCEVSKDKQPGDQKQRWVQALTDIANIA 153

[Close]

BLAST of Carg13758 vs. Swiss-Prot
Match: sp|Q9SSN3|TIR_ARATH (Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana OX=3702 GN=TIR PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 32  FDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVP 91
           +DVF+S RG DTR +    L++      +R F D K +  G     ++ S I   R  V 
Sbjct: 9   YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVV 68

Query: 92  VFSPRYCESYYCLYELARMLRSNK----WIVPIFWNVKPSELR 131
           V S  Y  S +CL EL  ++   K     ++PIF+ V+P+ +R
Sbjct: 69  VVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVR 111

[Close]

BLAST of Carg13758 vs. Swiss-Prot
Match: sp|F4KIF3|CSA1_ARATH (Disease resistance-like protein CSA1 OS=Arabidopsis thaliana OX=3702 GN=CSA1 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-09
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 28  ESPDFDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCR 87
           E+P   VFI+ RG++ R++    L +     G+  F+D      G  L   ++  I   R
Sbjct: 13  ETPQDQVFINFRGVELRKNFVSHLEKGLKRKGINAFIDTDE-EMGQELSVLLE-RIEGSR 72

Query: 88  VGVPVFSPRYCESYYCLYELARMLRSNKW----IVPIFWNVKP 127
           + + +FSPRY ES +CL ELA+M    +     ++PIF+ V+P
Sbjct: 73  IALAIFSPRYTESKWCLKELAKMKERTEQKELVVIPIFYKVQP 113

[Close]

BLAST of Carg13758 vs. TrEMBL
Match: tr|A0A2P4KQV3|A0A2P4KQV3_QUESU (Isoform 2 of tmv resistance protein n OS=Quercus suber OX=58331 GN=CFP56_22649 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.5e-49
Identity = 99/180 (55.00%), Postives = 128/180 (71.11%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIKNRXXXXXXTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL 60
           MQRSPA +K+      + +       T S   DVFI+HRGIDT+R+VAG+L+ H SG+GL
Sbjct: 43  MQRSPALIKSLISSKILHSLPKSQTRTISRSCDVFINHRGIDTKRTVAGLLYNHLSGMGL 102

Query: 61  RPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI 120
           +PFLD ++M PGD L  KID AI + ++GV VFSPRYCESY+CL+ELA ++ S K ++PI
Sbjct: 103 KPFLDSQNMKPGDKLFDKIDKAILNSKLGVAVFSPRYCESYFCLHELALIMESKKRVIPI 162

Query: 121 FWNVKPSELRVADEN----KRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMK 177
           F +VKPS+LRV D      K L RF WA+EEAK TVGL+FD++ GDWSE L + S A MK
Sbjct: 163 FCDVKPSQLRVKDYGICPAKELQRFTWALEEAKYTVGLTFDTSRGDWSEFLRNASDAVMK 222

[Close]

BLAST of Carg13758 vs. TrEMBL
Match: tr|A0A1S3BG53|A0A1S3BG53_CUCME (disease resistance-like protein CSA1 OS=Cucumis melo OX=3656 GN=LOC103489293 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 91/147 (61.90%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 33  DVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPV 92
           DVFI+HRG+DT+R++AG+LH+HFS +GLRPFLD KSM PGD L G+I+  IRSC+VG+ V
Sbjct: 34  DVFINHRGVDTKRNIAGLLHDHFSRIGLRPFLDSKSMKPGDKLFGEIEEGIRSCKVGLAV 93

Query: 93  FSPRYCESYYCLYELARMLRSNKWIVPIFWNVKPSELRV----ADENKRLSRFAWAVEEA 152
           FSPRYCESY+CL+ELA M+ + K I+PIF +V+PS+LRV    +   K L RF WA+ EA
Sbjct: 94  FSPRYCESYFCLHELALMVENKKKIIPIFVDVRPSQLRVEYNYSCPKKELQRFNWALGEA 153

Query: 153 KCTVGLSFDSTNGDWSELLTSVSGAAM 176
           K TVGL+FD+ NGDWSELL   S A +
Sbjct: 154 KYTVGLTFDTVNGDWSELLRKASNAVI 180

[Close]

BLAST of Carg13758 vs. TrEMBL
Match: tr|M5WIS4|M5WIS4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G041100 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 99/186 (53.23%), Postives = 127/186 (68.28%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIKNRXXXXXXTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGL 60
           MQRSPA V+       ++          S   DVFI+HRGIDT+R+VAG+L  HFS L L
Sbjct: 1   MQRSPALVRKI-----LRQGSNHIQTVNSRPCDVFINHRGIDTKRTVAGLLFYHFSRLRL 60

Query: 61  RPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPI 120
            PFLD K+M PGD L  +ID+AIR C+VG+ VFSP+YCESY+CL+ELA ++ S K ++P+
Sbjct: 61  HPFLDSKNMKPGDKLFDEIDAAIRKCKVGLAVFSPQYCESYFCLHELALLMESKKRVIPV 120

Query: 121 FWNVKPSELRVADENK----RLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMK 180
           F NVKPS+LRV D        L RF+WA+EEAK TVGL+FDS+ GDWSE L   S A ++
Sbjct: 121 FCNVKPSQLRVRDNGTCSPVELQRFSWALEEAKYTVGLTFDSSKGDWSEFLRDASDAVLQ 180

Query: 181 LVEEDE 183
            + E E
Sbjct: 181 NLLEVE 181

[Close]

BLAST of Carg13758 vs. TrEMBL
Match: tr|A0A2P5QML2|A0A2P5QML2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD27316 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-47
Identity = 90/177 (50.85%), Postives = 123/177 (69.49%), Query Frame = 0


Query: 10  ATHLCAKIKNRXXXXXXTESPDFDVFISHRGIDTRRSVAGILHEHFSGLGLRPFLDVKSM 69
           A HL   I         T  P  D+FI+HRG DT++++AG+L +HF  +GLRPFLD K+M
Sbjct: 9   ARHLYRNILKPRTPIRATAKPPCDIFINHRGTDTKKTIAGLLDDHFFRMGLRPFLDSKNM 68

Query: 70  SPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVPIFWNVKPSEL 129
            PGD L  KID AIR C++GV +FSP YC+SY+CL+ELA ++ S K ++PIFW+VKPS+L
Sbjct: 69  KPGDRLFEKIDPAIRGCKIGVAIFSPNYCDSYFCLHELALLIESKKRVIPIFWDVKPSQL 128

Query: 130 RVAD----ENKRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAMKLVEEDE 183
           +V D      ++L RF+WA+EEAK TVGL+FD+  GDWS  L + + A +K + E E
Sbjct: 129 QVVDYGTSSAEQLERFSWALEEAKYTVGLTFDTLTGDWSHFLNTATDAVIKNLVELE 185

[Close]

BLAST of Carg13758 vs. TrEMBL
Match: tr|A0A2R6QA45|A0A2R6QA45_ACTCH (TMV resistance protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20626 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.3e-47
Identity = 96/187 (51.34%), Postives = 131/187 (70.05%), Query Frame = 0


Query: 1   MQRSPAAVKATHLCAKIKNRXXXXXXTESPD-FDVFISHRGIDTRRSVAGILHEHFSGLG 60
           MQRS   + A  +C ++          + P+ +DVFI+HR IDT ++VAG+L++H + L 
Sbjct: 1   MQRS---IIANKMCRQVLRYRKNMMVVDKPECYDVFINHRRIDTNKNVAGLLYDHLARLN 60

Query: 61  LRPFLDVKSMSPGDNLIGKIDSAIRSCRVGVPVFSPRYCESYYCLYELARMLRSNKWIVP 120
           LRPFLD K+M PGD L  KI +A+ SC+VG+ VFSP YC+SY+CL+EL+ ++ + K ++P
Sbjct: 61  LRPFLDSKTMKPGDKLFEKIGTALHSCKVGIAVFSPNYCQSYFCLHELSNIMEAKKKVIP 120

Query: 121 IFWNVKPSELRVADEN----KRLSRFAWAVEEAKCTVGLSFDSTNGDWSELLTSVSGAAM 180
           IF +VKPSELRV D      K L RF WA+EEAK TVGL+FDS+NGDW +LLT+ S A M
Sbjct: 121 IFVDVKPSELRVVDNGNCTAKELVRFHWALEEAKNTVGLTFDSSNGDWLDLLTNASDAVM 180

Query: 181 KLVEEDE 183
           K + E E
Sbjct: 181 KNLLEIE 184

The following BLAST results are available for this feature:

BLAST of Carg13758 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950368.1	2.4e-94	95.08	toll/interleukin-1 receptor-like protein [Cucurbita moschata]	[more]
XP_023003829.1	4.8e-55	59.49	TMV resistance protein N-like [Cucurbita maxima]	[more]
XP_022926604.1	1.1e-54	58.46	TMV resistance protein N-like [Cucurbita moschata]	[more]
XP_023517713.1	7.0e-54	58.46	TMV resistance protein N-like [Cucurbita pepo subsp. pepo]	[more]
XP_023924751.1	4.0e-49	54.84	disease resistance protein LAZ5-like [Quercus suber]	[more]

BLAST of Carg13758 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61105.1	7.9e-44	53.21	Toll-Interleukin-Resistance (TIR) domain family protein	[more]
AT1G52900.1	1.9e-37	47.10	Toll-Interleukin-Resistance (TIR) domain family protein	[more]
AT4G09430.1	5.9e-15	36.11	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G72860.1	1.5e-13	30.57	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G17615.1	1.9e-13	28.93	Disease resistance protein (TIR-NBS class)	[more]

BLAST of Carg13758 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q40392\|TMVRN_NICGU	4.1e-13	35.00	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]
sp\|Q9SZ66\|DSC1_ARATH	2.2e-11	31.41	Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=...	[more]
sp\|F4JNB7\|RPP5_ARATH	5.0e-11	29.14	Disease resistance protein RPP5 OS=Arabidopsis thaliana OX=3702 GN=RPP5 PE=1 SV=...	[more]
sp\|Q9SSN3\|TIR_ARATH	3.6e-09	33.01	Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana OX=3702 GN=TIR ...	[more]
sp\|F4KIF3\|CSA1_ARATH	4.6e-09	33.01	Disease resistance-like protein CSA1 OS=Arabidopsis thaliana OX=3702 GN=CSA1 PE=...	[more]

BLAST of Carg13758 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4KQV3\|A0A2P4KQV3_QUESU	4.5e-49	55.00	Isoform 2 of tmv resistance protein n OS=Quercus suber OX=58331 GN=CFP56_22649 P...	[more]
tr\|A0A1S3BG53\|A0A1S3BG53_CUCME	1.1e-47	61.90	disease resistance-like protein CSA1 OS=Cucumis melo OX=3656 GN=LOC103489293 PE=...	[more]
tr\|M5WIS4\|M5WIS4_PRUPE	2.4e-47	53.23	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G041100 PE=4 SV=1	[more]
tr\|A0A2P5QML2\|A0A2P5QML2_GOSBA	3.2e-47	50.85	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD27316 PE=4 SV...	[more]
tr\|A0A2R6QA45\|A0A2R6QA45_ACTCH	9.3e-47	51.34	TMV resistance protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035897	Toll_tir_struct_dom_sf
IPR000157	TIR_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13758-RA	Carg13758-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 31..173 e-value: 1.8E-19 score: 80.7
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF13676	TIR_2	coord: 34..126 e-value: 5.5E-16 score: 58.7
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROSITE	PS50104	TIR	coord: 30..173 score: 15.378
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	GENE3D	G3DSA:3.40.50.10140		coord: 7..151 e-value: 1.4E-31 score: 111.2
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	SUPERFAMILY	SSF52200	Toll/Interleukin receptor TIR domain	coord: 26..130
None	No IPR available	PANTHER	PTHR31008:SF2	TOLL-INTERLEUKIN-RESISTANCE TIR DOMAIN-CONTAINING PROTEIN	coord: 23..180
None	No IPR available	PANTHER	PTHR31008	COP1-INTERACTING PROTEIN-RELATED	coord: 23..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13758	Cla019476	Watermelon (97103) v1	carwmB0930
Carg13758	ClCG03G005710	Watermelon (Charleston Gray)	carwcgB0908
Carg13758	CSPI01G11820	Wild cucumber (PI 183967)	carcpiB0968
Carg13758	CmaCh07G002620	Cucurbita maxima (Rimu)	carcmaB1279
Carg13758	CmaCh13G006590	Cucurbita maxima (Rimu)	carcmaB1274
Carg13758	CmoCh13G006790	Cucurbita moschata (Rifu)	carcmoB1244
Carg13758	Lsi02G007200	Bottle gourd (USVL1VR-Ls)	carlsiB848
Carg13758	Cp4.1LG20g04260	Cucurbita pepo (Zucchini)	carcpeB1291
Carg13758	Cp4.1LG10g08980	Cucurbita pepo (Zucchini)	carcpeB1288
Carg13758	Cp4.1LG19g07340	Cucurbita pepo (Zucchini)	carcpeB1289
Carg13758	MELO3C002574.2	Melon (DHL92) v3.6.1	carmedB0921
Carg13758	CsaV3_1G011980	Cucumber (Chinese Long) v3	carcucB0969
Carg13758	Cla97C03G057020	Watermelon (97103) v2	carwmbB0976
Carg13758	Bhi08G001575	Wax gourd	carwgoB1077

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13758	Carg07796	Silver-seed gourd	carcarB563

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13758	Silver-seed gourd	carcarB037
Carg13758	Cucumber (Gy14) v2	carcgybB0922
Carg13758	Cucumber (Gy14) v1	carcgyB1047
Carg13758	Cucurbita maxima (Rimu)	carcmaB1276
Carg13758	Cucurbita moschata (Rifu)	carcmoB1245
Carg13758	Cucurbita moschata (Rifu)	carcmoB1246
Carg13758	Cucurbita moschata (Rifu)	carcmoB1250
Carg13758	Wild cucumber (PI 183967)	carcpiB0971
Carg13758	Cucumber (Chinese Long) v2	carcuB0948
Carg13758	Cucumber (Chinese Long) v3	carcucB0972
Carg13758	Bottle gourd (USVL1VR-Ls)	carlsiB846
Carg13758	Melon (DHL92) v3.5.1	carmeB0918
Carg13758	Melon (DHL92) v3.6.1	carmedB0925
Carg13758	Watermelon (Charleston Gray)	carwcgB0906
Carg13758	Watermelon (97103) v1	carwmB0931
Carg13758	Watermelon (97103) v2	carwmbB0972
Carg13758	Wax gourd	carwgoB1075