Carg13724 (gene) Silver-seed gourd

NameCarg13724
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger, C2H2 protein
LocationCucurbita_argyrosperma_scaffold_058 : 235681 .. 235973 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTAATAAAGGCGTATTTACATGCGCAACAAGTGGAAGAGCCTTCGAATGTATTGAGATGAATGAAGAAGAAGATATGGGCGGCTTAAGAAGAGCCTTAATGGTGTGCAGAGTGATTGCAGGGATGGTCTGTGGCGGATGCATGGAGGAAGATGAACTGAACGCCAATTCCGGTTCTGGGTTCGAATCGTCGAGTGGGAAAACGGGACAGAATTCAAAACAGGAAGAACTGTTCGTGTTCAATCCTGAAGCTCTACTTCCTTGCTTCGTGGTAACTTACAGACAGTGA

mRNA sequence

ATGGGCGTATTTACATGCGCAACAAGTGGAAGAGCCTTCGAATGTATTGAGATGAATGAAGAAGAAGATATGGGCGGCTTAAGAAGAGCCTTAATGGTGTGCAGAGTGATTGCAGGGATGGTCTGTGGCGGATGCATGGAGGAAGATGAACTGAACGCCAATTCCGGTTCTGGGTTCGAATCGTCGAGTGGGAAAACGGGACAGAATTCAAAACAGGAAGAACTGTTCGTGTTCAATCCTGAAGCTCTACTTCCTTGCTTCGTGGTAACTTACAGACAGTGA

Coding sequence (CDS)

ATGGGCGTATTTACATGCGCAACAAGTGGAAGAGCCTTCGAATGTATTGAGATGAATGAAGAAGAAGATATGGGCGGCTTAAGAAGAGCCTTAATGGTGTGCAGAGTGATTGCAGGGATGGTCTGTGGCGGATGCATGGAGGAAGATGAACTGAACGCCAATTCCGGTTCTGGGTTCGAATCGTCGAGTGGGAAAACGGGACAGAATTCAAAACAGGAAGAACTGTTCGTGTTCAATCCTGAAGCTCTACTTCCTTGCTTCGTGGTAACTTACAGACAGTGA

Protein sequence

MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
BLAST of Carg13724 vs. NCBI nr
Match: XP_022950196.1 (uncharacterized protein LOC111453361 [Cucurbita moschata])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMV GGCMEEDELNANSGSGFES
Sbjct: 274 GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVWGGCMEEDELNANSGSGFES 333

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           SSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Sbjct: 334 SSGKTGQNSKQEELFVFNPEAVLPCFVVTYRR 365

BLAST of Carg13724 vs. NCBI nr
Match: XP_023544489.1 (uncharacterized protein LOC111804050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 9.0e-42
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           GV TCATSGRAFECIEMN EEDMGGLRRALMVCRVIAGMVCGGCMEEDELN NSGSGF+S
Sbjct: 274 GVLTCATSGRAFECIEMN-EEDMGGLRRALMVCRVIAGMVCGGCMEEDELNTNSGSGFQS 333

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           SSGKTGQNSKQEELFVFNPEA+LPCFVVTYRQ
Sbjct: 334 SSGKTGQNSKQEELFVFNPEAVLPCFVVTYRQ 364

BLAST of Carg13724 vs. NCBI nr
Match: XP_022977364.1 (uncharacterized protein LOC111477713 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           GVFTC+TSGRAFECIEMN EEDMGGLRRALMVCRVIAG VCGGC EEDE+NANSGSGFES
Sbjct: 274 GVFTCSTSGRAFECIEMN-EEDMGGLRRALMVCRVIAGRVCGGCKEEDEMNANSGSGFES 333

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           SSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Sbjct: 334 SSGKTGQNSKQEELFVFNPEAVLPCFVVTYRR 364

BLAST of Carg13724 vs. NCBI nr
Match: XP_022142356.1 (uncharacterized protein LOC111012495 [Momordica charantia])

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           G   CATSGRA E I +NEEE+  GLRRALMVCRVIAG + GG +E+DE  AN  SG +S
Sbjct: 269 GAIICATSGRALESIVVNEEEE--GLRRALMVCRVIAGRIHGGGVEKDE-EANDNSGLDS 328

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           S G+TG++   EE  VFNP A+LPCFVVTY++
Sbjct: 329 SGGETGRSPNPEEFHVFNPRAVLPCFVVTYKR 357

BLAST of Carg13724 vs. NCBI nr
Match: XP_008439943.1 (PREDICTED: uncharacterized protein LOC103484579 [Cucumis melo] >XP_016899197.1 PREDICTED: uncharacterized protein LOC103484579 [Cucumis melo] >XP_016899198.1 PREDICTED: uncharacterized protein LOC103484579 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           G FTCATSG+AFE I MNE+     LR+ALMVCRVIAG +     EEDE + N  SG + 
Sbjct: 272 GAFTCATSGKAFEGIAMNEDV---RLRKALMVCRVIAGRI-----EEDEESDN--SGLDL 331

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           S GKTG++SK+EEL+VF+ +A+LPCFV+T+++
Sbjct: 332 SGGKTGRSSKREELYVFDSKAVLPCFVLTFKR 353

BLAST of Carg13724 vs. TAIR10
Match: AT5G54630.1 (zinc finger protein-related)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-16
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1   MGVFTCATSGRAFECIEMNEEEDMGG----LRRALMVCRVIAGMVCGGCMEEDELNANSG 60
           +GVFT +TSGRAFE I +N  ++ G     +R+ L+VCRVIAG V       +E+N    
Sbjct: 377 VGVFTASTSGRAFESILVNGGDESGDVDRTVRKVLIVCRVIAGRVHRPVENVEEMNGLM- 436

Query: 61  SGFESSSGKTGQNSKQEELFVFNPEALLPCFVV 90
           SGF+S +GK G  +  EEL++ NP+ALLPCFVV
Sbjct: 437 SGFDSLAGKVGLYTNVEELYLLNPKALLPCFVV 468

BLAST of Carg13724 vs. TAIR10
Match: AT2G29660.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 9.7e-14
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMG--GLRRALMVCRVIAGMVCGGCMEEDELNANSGSGF 61
           G+ T AT  R    +    EE+ G   ++RA++VCRV+AG V    +++D+++ + G G+
Sbjct: 274 GIATLATGWRGHVAVPEEVEEEFGFMNVKRAMLVCRVVAGRVGCDLIDDDDVDKSDGGGY 333

Query: 62  ESSSGKTGQNS------KQEELFVFNPEALLPCFVVTY 92
           +S  G++G  S        +EL VFNP A+LPCFV+ Y
Sbjct: 334 DSLVGQSGNKSGALLRIDDDELLVFNPRAVLPCFVIVY 371

BLAST of Carg13724 vs. TAIR10
Match: AT4G27240.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1   MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFE 60
           +GVFT +TS RAFE I +   +  GG R+AL+VCRVIAG V       +E+     SGF+
Sbjct: 342 IGVFTASTSERAFESIVIG--DGGGGDRKALIVCRVIAGRVHRPVENVEEMGGLL-SGFD 401

Query: 61  SSSGKTGQNSKQEELFVFNPEALLPCFVV 90
           S +GK G  +  EEL++ N  ALLPCFV+
Sbjct: 402 SLAGKVGLYTNVEELYLLNSRALLPCFVL 427

BLAST of Carg13724 vs. TAIR10
Match: AT1G11490.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           GV T +TS  A E IE ++  + G L  A+++CRVIAG V    M+  E N+   S F+S
Sbjct: 277 GVLTASTSSTALESIETDQGRNRGSL-IAVVLCRVIAGRV-HKPMQTFE-NSLGFSEFDS 336

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYR 93
            + K GQNS+ EEL++ + +ALLPCFV+ ++
Sbjct: 337 LALKVGQNSRIEELYLLSTKALLPCFVIIFK 364

BLAST of Carg13724 vs. TAIR10
Match: AT1G75710.1 (C2H2-like zinc finger protein)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-09
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNA-------- 61
           GV T A+SGRA + +  +++      RR ++VCRVIAG V    +   + +A        
Sbjct: 356 GVRTTASSGRADDLLRCSDD-----ARRVMLVCRVIAGRVKRVDLPAADASATAEKKSTV 415

Query: 62  ---------NSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYR 93
                    +SG  F+S +   G  S  EEL V+NP A+LPCFVV Y+
Sbjct: 416 EDNSVVGVSSSGGTFDSVAVNAGVYSNLEELVVYNPRAILPCFVVIYK 458

BLAST of Carg13724 vs. TrEMBL
Match: tr|A0A1S3B0L1|A0A1S3B0L1_CUCME (uncharacterized protein LOC103484579 OS=Cucumis melo OX=3656 GN=LOC103484579 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           G FTCATSG+AFE I MNE+     LR+ALMVCRVIAG +     EEDE + N  SG + 
Sbjct: 272 GAFTCATSGKAFEGIAMNEDV---RLRKALMVCRVIAGRI-----EEDEESDN--SGLDL 331

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           S GKTG++SK+EEL+VF+ +A+LPCFV+T+++
Sbjct: 332 SGGKTGRSSKREELYVFDSKAVLPCFVLTFKR 353

BLAST of Carg13724 vs. TrEMBL
Match: tr|A0A0A0KHY3|A0A0A0KHY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516660 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 2   GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFES 61
           G FTCATSG+AFE I +NEE+    LRRAL+VCRVIAG +     EEDE N N  SG + 
Sbjct: 272 GAFTCATSGKAFEGIAINEEDVR--LRRALVVCRVIAGRI-----EEDEENEN--SGLDL 331

Query: 62  SSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ 94
           S GK G++S +EEL+VF+ +A+LPCFVVT+ +
Sbjct: 332 SGGKRGRSSNREELYVFDSKAVLPCFVVTFNR 354

BLAST of Carg13724 vs. TrEMBL
Match: tr|A0A2K2CBZ7|A0A2K2CBZ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G415600v3 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 1   MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFE 60
           +GVFT +TSGRAFECIE+ E++    +R+AL+VCRVIAG V        E+  +S +GF+
Sbjct: 301 VGVFTTSTSGRAFECIEIFEDDPC--IRKALIVCRVIAGRVHRPLENIQEI--SSQTGFD 360

Query: 61  SSSGKTGQNSKQEELFVFNPEALLPCFVV 90
           S +GK G  S  EEL++ NP+ALLPCFVV
Sbjct: 361 SLAGKVGLYSNIEELYLLNPKALLPCFVV 385

BLAST of Carg13724 vs. TrEMBL
Match: tr|U5GX07|U5GX07_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G415600v3 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 1   MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFE 60
           +GVFT +TSGRAFECIE+ E++    +R+AL+VCRVIAG V        E+  +S +GF+
Sbjct: 352 VGVFTTSTSGRAFECIEIFEDDPC--IRKALIVCRVIAGRVHRPLENIQEI--SSQTGFD 411

Query: 61  SSSGKTGQNSKQEELFVFNPEALLPCFVV 90
           S +GK G  S  EEL++ NP+ALLPCFVV
Sbjct: 412 SLAGKVGLYSNIEELYLLNPKALLPCFVV 436

BLAST of Carg13724 vs. TrEMBL
Match: tr|A0A1S2YJF6|A0A1S2YJF6_CICAR (uncharacterized protein LOC101514605 OS=Cicer arietinum OX=3827 GN=LOC101514605 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 1   MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFE 60
           +GVFT +TSGRAFECIE+ ++E    LR+AL+VCRVIAG V        E+   S +GF+
Sbjct: 339 IGVFTTSTSGRAFECIEILDDEP--SLRKALIVCRVIAGRVHRPLENIQEM--ASQTGFD 398

Query: 61  SSSGKTGQNSKQEELFVFNPEALLPCFVV 90
           S +GK G  S  EEL++ NP ALLPCFVV
Sbjct: 399 SLAGKVGLYSNIEELYLLNPRALLPCFVV 423

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022950196.11.6e-4396.74uncharacterized protein LOC111453361 [Cucurbita moschata][more]
XP_023544489.19.0e-4294.57uncharacterized protein LOC111804050 [Cucurbita pepo subsp. pepo][more]
XP_022977364.17.6e-4192.39uncharacterized protein LOC111477713 [Cucurbita maxima][more]
XP_022142356.13.0e-2161.96uncharacterized protein LOC111012495 [Momordica charantia][more]
XP_008439943.11.6e-1757.61PREDICTED: uncharacterized protein LOC103484579 [Cucumis melo] >XP_016899197.1 P... [more]
Match NameE-valueIdentityDescription
AT5G54630.13.6e-1649.46zinc finger protein-related[more]
AT2G29660.19.7e-1437.76zinc finger (C2H2 type) family protein[more]
AT4G27240.13.7e-1348.31zinc finger (C2H2 type) family protein[more]
AT1G11490.11.0e-1043.96zinc finger (C2H2 type) family protein[more]
AT1G75710.12.5e-0936.11C2H2-like zinc finger protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B0L1|A0A1S3B0L1_CUCME1.0e-1757.61uncharacterized protein LOC103484579 OS=Cucumis melo OX=3656 GN=LOC103484579 PE=... [more]
tr|A0A0A0KHY3|A0A0A0KHY3_CUCSA2.3e-1757.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516660 PE=4 SV=1[more]
tr|A0A2K2CBZ7|A0A2K2CBZ7_POPTR3.1e-1453.93Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G415600v3 PE=... [more]
tr|U5GX07|U5GX07_POPTR3.1e-1453.93Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G415600v3 PE=... [more]
tr|A0A1S2YJF6|A0A1S2YJF6_CICAR4.0e-1455.06uncharacterized protein LOC101514605 OS=Cicer arietinum OX=3827 GN=LOC101514605 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13724-RACarg13724-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.90.228.10coord: 2..93
e-value: 9.3E-7
score: 30.8
NoneNo IPR availablePANTHERPTHR31681:SF19SUBFAMILY NOT NAMEDcoord: 1..92
NoneNo IPR availablePANTHERPTHR31681FAMILY NOT NAMEDcoord: 1..92

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13724Silver-seed gourdcarcarB037
Carg13724Silver-seed gourdcarcarB563
Carg13724Silver-seed gourdcarcarB637
Carg13724Cucumber (Gy14) v2carcgybB0919
Carg13724Cucumber (Gy14) v2carcgybB0922
Carg13724Cucumber (Gy14) v1carcgyB1047
Carg13724Cucurbita maxima (Rimu)carcmaB1274
Carg13724Cucurbita maxima (Rimu)carcmaB1276
Carg13724Cucurbita maxima (Rimu)carcmaB1279
Carg13724Cucurbita moschata (Rifu)carcmoB1244
Carg13724Cucurbita moschata (Rifu)carcmoB1245
Carg13724Cucurbita moschata (Rifu)carcmoB1246
Carg13724Cucurbita moschata (Rifu)carcmoB1250
Carg13724Cucurbita pepo (Zucchini)carcpeB1289
Carg13724Cucurbita pepo (Zucchini)carcpeB1291
Carg13724Cucurbita pepo (Zucchini)carcpeB1288
Carg13724Wild cucumber (PI 183967)carcpiB0968
Carg13724Wild cucumber (PI 183967)carcpiB0971
Carg13724Cucumber (Chinese Long) v2carcuB0945
Carg13724Cucumber (Chinese Long) v2carcuB0948
Carg13724Cucumber (Chinese Long) v3carcucB0969
Carg13724Cucumber (Chinese Long) v3carcucB0972
Carg13724Bottle gourd (USVL1VR-Ls)carlsiB846
Carg13724Bottle gourd (USVL1VR-Ls)carlsiB848
Carg13724Melon (DHL92) v3.5.1carmeB0914
Carg13724Melon (DHL92) v3.5.1carmeB0918
Carg13724Melon (DHL92) v3.6.1carmedB0921
Carg13724Melon (DHL92) v3.6.1carmedB0925
Carg13724Watermelon (Charleston Gray)carwcgB0906
Carg13724Watermelon (Charleston Gray)carwcgB0908
Carg13724Watermelon (97103) v1carwmB0930
Carg13724Watermelon (97103) v1carwmB0931
Carg13724Watermelon (97103) v2carwmbB0972
Carg13724Watermelon (97103) v2carwmbB0974
Carg13724Watermelon (97103) v2carwmbB0976
Carg13724Wax gourdcarwgoB1075
Carg13724Wax gourdcarwgoB1077