Carg13674 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13674
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_058 : 49020 .. 49454 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACACCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAATGTAGAATAGAATCTTCAGCCTTCGTTAAGTAATCAGCAACAACTAATAACTGATATATGAATCTGATCTTGTTGATTGATGCAGGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGA

mRNA sequence

ATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACACCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAATGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGA

Coding sequence (CDS)

ATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACACCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAATGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGA

Protein sequence

MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHLEEEKRRLESEAEMTRMLLQCQMQIASFLSARQGPNNRKRKRVQEEEPSPSVSLEMDGALLLSLIQLNMITF

Homology

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BLAST of Carg13674 vs. NCBI nr
Match: XP_023544081.1 (uncharacterized protein LOC111803775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 103/168 (61.31%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHLEEEKRRLES------ 60
           MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPH E E   + +      
Sbjct: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHSEAETSHISTGEDSGX 60

Query: 61  ----------------------------------------------EAEMTRMLLQCQMQ 117
                                                           EMTRMLLQCQMQ
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMTRMLLQCQMQ 120

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BLAST of Carg13674 vs. NCBI nr
Match: XP_022977691.1 (uncharacterized protein LOC111477923 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 102/168 (60.71%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHLEEEKRRLES------ 60
           MEEPTGGTKPIKCSEDQK QKYGRYAAGSSSDELLIGNSDAPPH E E   + +      
Sbjct: 37  MEEPTGGTKPIKCSEDQKHQKYGRYAAGSSSDELLIGNSDAPPHSEAETSHISTGEDSXX 96

Query: 61  ----------------------------------------------EAEMTRMLLQCQMQ 117
                                                           EMTRMLLQCQMQ
Sbjct: 97  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMTRMLLQCQMQ 156

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BLAST of Carg13674 vs. NCBI nr
Match: XP_022949954.1 (uncharacterized protein At4g22160 [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 102/168 (60.71%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHLEEE------------ 60
           MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPH E E            
Sbjct: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHSETETSXXXXXXXXXX 60

Query: 61  ----------------------------------------KRRLESEAEMTRMLLQCQMQ 117
                                                            MTRMLLQCQMQ
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTRMLLQCQMQ 120

[Close]

BLAST of Carg13674 vs. NCBI nr
Match: XP_008440047.1 (PREDICTED: uncharacterized protein LOC103484640 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 72/168 (42.86%), Postives = 79/168 (47.02%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPH---------------- 60
           MEE TGGTKPIKC  DQKRQKYG   AG S+ +L IGN DAPPH                
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDXXXXXXXXXXXXX 60

Query: 61  ------------------------------------LEEEKRRLESEAEMTRMLLQCQMQ 117
                                               LEEE+RRLESE EMT MLLQCQ+Q
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXTAEMEIFKATEFIRLEEERRRLESEVEMTSMLLQCQLQ 120

[Close]

BLAST of Carg13674 vs. NCBI nr
Match: XP_004134781.1 (PREDICTED: uncharacterized protein LOC101203124 [Cucumis sativus] >KGN49078.1 hypothetical protein Csa_6G512930 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 71/167 (42.51%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAP------------------ 60
           MEE TGGTKPIKC +DQKRQKYG   AG S+ +L IGNSD P                  
Sbjct: 1   MEEQTGGTKPIKCRDDQKRQKYGSDGAGFSTGDLPIGNSDTPHSEXXXXXXXXXXXXXXX 60

Query: 61  ---------------------------------PHLEEEKRRLESEAEMTRMLLQCQMQI 117
                                              LEE      SEAEMTRMLLQCQ+QI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXEIFKATEVMRLEEXXXXXXSEAEMTRMLLQCQLQI 120

[Close]

BLAST of Carg13674 vs. TrEMBL
Match: tr|A0A1S3AZS4|A0A1S3AZS4_CUCME (uncharacterized protein LOC103484640 OS=Cucumis melo OX=3656 GN=LOC103484640 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 72/168 (42.86%), Postives = 79/168 (47.02%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPH---------------- 60
           MEE TGGTKPIKC  DQKRQKYG   AG S+ +L IGN DAPPH                
Sbjct: 1   MEEQTGGTKPIKCRGDQKRQKYGSDGAGFSTGDLPIGNLDAPPHSEDXXXXXXXXXXXXX 60

Query: 61  ------------------------------------LEEEKRRLESEAEMTRMLLQCQMQ 117
                                               LEEE+RRLESE EMT MLLQCQ+Q
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXTAEMEIFKATEFIRLEEERRRLESEVEMTSMLLQCQLQ 120

[Close]

BLAST of Carg13674 vs. TrEMBL
Match: tr|A0A0A0KHR9|A0A0A0KHR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G512930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.1e-20
Identity = 71/167 (42.51%), Postives = 78/167 (46.71%), Query Frame = 0


Query: 1   MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAP------------------ 60
           MEE TGGTKPIKC +DQKRQKYG   AG S+ +L IGNSD P                  
Sbjct: 1   MEEQTGGTKPIKCRDDQKRQKYGSDGAGFSTGDLPIGNSDTPHSEXXXXXXXXXXXXXXX 60

Query: 61  ---------------------------------PHLEEEKRRLESEAEMTRMLLQCQMQI 117
                                              LEE      SEAEMTRMLLQCQ+QI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXEIFKATEVMRLEEXXXXXXSEAEMTRMLLQCQLQI 120

The following BLAST results are available for this feature:

BLAST of Carg13674 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544081.1	3.4e-30	61.31	uncharacterized protein LOC111803775 [Cucurbita pepo subsp. pepo]	[more]
XP_022977691.1	1.3e-29	60.71	uncharacterized protein LOC111477923 [Cucurbita maxima]	[more]
XP_022949954.1	1.1e-28	60.71	uncharacterized protein At4g22160 [Cucurbita moschata]	[more]
XP_008440047.1	4.2e-20	42.86	PREDICTED: uncharacterized protein LOC103484640 [Cucumis melo]	[more]
XP_004134781.1	9.3e-20	42.51	PREDICTED: uncharacterized protein LOC101203124 [Cucumis sativus] >KGN49078.1 hy...	[more]

BLAST of Carg13674 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13674 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13674 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZS4\|A0A1S3AZS4_CUCME	2.8e-20	42.86	uncharacterized protein LOC103484640 OS=Cucumis melo OX=3656 GN=LOC103484640 PE=...	[more]
tr\|A0A0A0KHR9\|A0A0A0KHR9_CUCSA	6.1e-20	42.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G512930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13674-RA	Carg13674-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13674	Cla014423	Watermelon (97103) v1	carwmB0931
Carg13674	Csa6G512930	Cucumber (Chinese Long) v2	carcuB0948
Carg13674	MELO3C007418	Melon (DHL92) v3.5.1	carmeB0918
Carg13674	ClCG01G021670	Watermelon (Charleston Gray)	carwcgB0906
Carg13674	CSPI06G33250	Wild cucumber (PI 183967)	carcpiB0971
Carg13674	CmaCh03G005540	Cucurbita maxima (Rimu)	carcmaB1276
Carg13674	CmoCh03G005810	Cucurbita moschata (Rifu)	carcmoB1246
Carg13674	Cp4.1LG10g09710	Cucurbita pepo (Zucchini)	carcpeB1288
Carg13674	MELO3C007418.2	Melon (DHL92) v3.6.1	carmedB0925
Carg13674	CsaV3_6G048720	Cucumber (Chinese Long) v3	carcucB0972
Carg13674	Cla97C01G021260	Watermelon (97103) v2	carwmbB0972
Carg13674	Bhi03G000475	Wax gourd	carwgoB1075

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13674	Silver-seed gourd	carcarB563
Carg13674	Cucumber (Gy14) v2	carcgybB0922
Carg13674	Cucumber (Gy14) v1	carcgyB1047
Carg13674	Cucurbita maxima (Rimu)	carcmaB1279
Carg13674	Cucurbita moschata (Rifu)	carcmoB1250
Carg13674	Cucurbita pepo (Zucchini)	carcpeB1289
Carg13674	Bottle gourd (USVL1VR-Ls)	carlsiB846