Carg13621 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13621
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger CCCH domain-containing protein 3-like
Location	Cucurbita_argyrosperma_scaffold_053 : 579936 .. 581963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAATTTATCGAATTGGAATAATAGTGGATTTTACATTGATTCTTCACAATCTATCCGCGATTCCCTTCTCGCCTTGGTTCCTTATAAGATTTCTAAATTGGTTTCTCTCTTCAATTTCCGACTGGGATCATCTTTTTCATAAGAGGAAGATCACACCATTTATTGAAGTTTTTTATTTGTGAAAGAGAATTTCTGAGCGATTTGGGGGCGTTTTTGTTGTTTGTTATCTGAATTTTCCCGGGAGATTTGAGGAGCTTCTTCAGCTTTGATTGGTTGGATTTGAAAAGCATTTGAAGGGGTTTTCCTTTTTTAAATATCTACGACCGATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGGTAACACTGAAGCTTCAACGATTTTTTATGCGCTTTTGTGTGATTGTTAGGATCTGATCCTTGTTTTTTTCGTTATAACCATCTAATGACTTTGGCTTTTTTGTGATCGGGTTTTTTTTTTTTCTAGTTTGAGCTGTCTTCCAAGTGTTCGAGTGTGTAAGAAATTTCGTGTGATTAGCGATTTTATTTTTCTCTTCTGTTTATGTTTCTGTCTTCATTGAAGATGATTCTGGTTAAATGTATTCAAGCCTCATCGGTTATCTCGTTTTGAAGAACTTCTATTGTGTTTTGATGCATTTGAGGCGTGGAGAGATTTCCTTTTCTTCGTGTTCGGCGATATCGATTTTGTTGCTTGTAGTTATTTAGCGTTGGAGCATCTTTTGACGGTTTATAAAACGAAGGATGTTAGTTCTCGGTGCTGTGTAGATCATCGTGTTGTTCATCACATTTTGATTTCTTGATTTCTATTTTCCCCTCTTTGAAATCAGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGTCCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGTATAAGTTATTTTGCTTCTGCAAGAACATTGGAATCTCTCGATTGACGCCGATGTCGCACAATCATCTATGATATACATGGTTCCTCATGATCTTCTATCTACTGATGATTGAGTAACGGATTTCTTTCGCTATTTGTTGATCATACAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGGTATTATTGTTGGGATTAAGTTTCTTAGATTTCGATGATGTTCGTAATTTAACCTACATGATAATCCTTTTGAAACTCTTTGACAGCCTTGATTTGAAAACCATCTAGAGCTGTGAAAATAGATAGACCCTTTAGGGGAGATTCATCTCAGGGCTATTTGGTGACATTTTTTGCAGTTTCTTATGACTTTTATTACTAACTTTTGAACGTGTTTGCAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTCAACATTTTAGGTCTTCCCATGCGACAGGTGCGCGGTCTTGGTTTATCAATTTTATGCTACCTGCGTATCGATATCTTAGATAGTTGGAATGATTTTGATGAGCCTAGTGCTTTCTCAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATATATGCCTGGTCCATGTGTACAAGGGCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGGTAAGTACCCGTTTGAATGAACAAGGTTTAGCTTAA

mRNA sequence

AAAAGGAATTTATCGAATTGGAATAATAGTGGATTTTACATTGATTCTTCACAATCTATCCGCGATTCCCTTCTCGCCTTGGTTCCTTATAAGATTTCTAAATTGGTTTCTCTCTTCAATTTCCGACTGGGATCATCTTTTTCATAAGAGGAAGATCACACCATTTATTGAAGTTTTTTATTTGTGAAAGAGAATTTCTGAGCGATTTGGGGGCGTTTTTGTTGTTTGTTATCTGAATTTTCCCGGGAGATTTGAGGAGCTTCTTCAGCTTTGATTGGTTGGATTTGAAAAGCATTTGAAGGGGTTTTCCTTTTTTAAATATCTACGACCGATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGTCCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTCAACATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATATATGCCTGGTCCATGTGTACAAGGGCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGGTAAGTACCCGTTTGAATGAACAAGGTTTAGCTTAA

Coding sequence (CDS)

ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGTCCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTCAACATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATATATGCCTGGTCCATGTGTACAAGGGCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGGTAAGTACCCGTTTGAATGAACAAGGTTTAGCTTAA

Protein sequence

MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVVSTRLNEQGLA

Homology

[Close]

BLAST of Carg13621 vs. NCBI nr
Match: XP_022947607.1 (zinc finger CCCH domain-containing protein 3-like [Cucurbita moschata] >XP_023533439.1 zinc finger CCCH domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV
Sbjct: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 238

[Close]

BLAST of Carg13621 vs. NCBI nr
Match: XP_022970766.1 (zinc finger CCCH domain-containing protein 3-like [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 2.4e-89
Identity = 237/238 (99.58%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSGLPYASGIPAWSLPR+QYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV
Sbjct: 181 TPFMPSSGLPYASGIPAWSLPRMQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 238

[Close]

BLAST of Carg13621 vs. NCBI nr
Match: XP_022149754.1 (zinc finger CCCH domain-containing protein 3 [Momordica charantia])

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 228/238 (95.80%), Postives = 232/238 (97.48%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQRNAVPNQSPD+SEALWRLEI DNQDGGDA ESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRNAVPNQSPDISEALWRLEIGDNQDGGDAEESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYVAQGALY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVAQGALYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ VGNMLPQARPGALGSAG
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVGNMLPQARPGALGSAG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSGLPY+ GIPAWSLPRVQYMPGPCVQGQQSYVPVLVSP QGAIAAQDWNTY+
Sbjct: 181 TPFMPSSGLPYSGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYM 238

[Close]

BLAST of Carg13621 vs. NCBI nr
Match: XP_008456401.1 (PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 4.8e-82
Identity = 224/238 (94.12%), Postives = 228/238 (95.80%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQR+ VPNQSPD+SEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRHDVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYV QG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+PVGN LPQARPGALGS G
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGNSLPQARPGALGSGG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSG+PY  GIPAWSLPRVQYMPGPCVQGQQSYVPVLVSP QGAIAAQDWNTYV
Sbjct: 181 TPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYV 238

[Close]

BLAST of Carg13621 vs. NCBI nr
Match: XP_022985967.1 (zinc finger CCCH domain-containing protein ZFN-like [Cucurbita maxima])

HSP 1 Score: 313.2 bits (801), Expect = 8.2e-82
Identity = 222/238 (93.28%), Postives = 230/238 (96.64%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQRNAVPNQSPD+SEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRNAVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPV+VAQGA+YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVFVAQGAMYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPV FNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+PVGNML  ARPGALGSAG
Sbjct: 121 GPVRFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGNMLHPARPGALGSAG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMP+SG+PY   +PAWSLPRVQYMPGPCVQGQQS+VPVLVSP QGAI AQDWNTYV
Sbjct: 181 TPFMPASGVPYTGAVPAWSLPRVQYMPGPCVQGQQSFVPVLVSPSQGAITAQDWNTYV 238

[Close]

BLAST of Carg13621 vs. TAIR10
Match: AT2G32930.2 (zinc finger nuclease 2)

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-21
Identity = 123/239 (51.46%), Postives = 151/239 (63.18%), Query Frame = 0


Query: 6   QVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGS 65
           QVQ +    +SPD  E  +R  +  N+D  +  +SSPYPDRPGE DC +++RTG C YG+
Sbjct: 7   QVQNSTGSIRSPDKIEDTFR-RMKVNED--NMEQSSPYPDRPGERDCQFFLRTGQCGYGN 66

Query: 66  NCRFNHPV-YVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGAGPVT 125
           +CR+NHP+  + QG +Y   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GAGPV 
Sbjct: 67  SCRYNHPLTNLPQGIIY---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAGPVL 126

Query: 126 FNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAGTPFM 185
           FN+LG              XXXXXXXXXXXXXXXXXX        Q   G    A + F 
Sbjct: 127 FNVLGLPMRQGEKPCPYYMXXXXXXXXXXXXXXXXXXH------SQPSNGHSAYAMSSF- 186

Query: 186 PSSGLPYASGIPAWSLPRVQY--MPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVVST 242
           PS G PYASG+   SLP   Y  +P P V   Q+Y+P +V+P QG +  Q W TY+ ++
Sbjct: 187 PSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYMTAS 232

[Close]

BLAST of Carg13621 vs. TAIR10
Match: AT1G04990.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 81.3 bits (199), Expect = 9.5e-16
Identity = 131/242 (54.13%), Postives = 154/242 (63.64%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           M D   VQ + V  +S D  E  +R ++  N+ G    E +PYPDRPGE DC +Y+RTG 
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFR-KMKVNETG--VEELNPYPDRPGERDCQFYLRTGL 64

Query: 61  CSYGSNCRFNHPVYVAQG-ALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRG 120
           C YGS+CR+NHP ++ Q  A Y   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DR G
Sbjct: 65  CGYGSSCRYNHPTHLPQDVAYYKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNG 124

Query: 121 AGPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSA 180
           A PV      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +           + 
Sbjct: 125 AQPVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXST----------AY 184

Query: 181 GTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVV 240
           G    P++ L YASG+   S     Y   P  Q  QSYVP+LVSP QG +  Q W  Y+ 
Sbjct: 185 GMSSFPAADLRYASGLTMMS----TYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMA 229

Query: 241 ST 242
           ++
Sbjct: 245 AS 229

[Close]

BLAST of Carg13621 vs. TAIR10
Match: AT3G02830.1 (zinc finger protein 1)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 21 EALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP 73
          +A+W++ +S +    +  E+  YP+RPGEPDC YY+RTG C +GS CRFNHP
Sbjct: 19 DAMWQMNLSSD----ETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66

[Close]

BLAST of Carg13621 vs. TAIR10
Match: AT5G18550.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.9e-12
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 VSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP 73
          +  ++WRL +     GG+      +P+RP EPDC+YY+RTG C YGS CRFNHP
Sbjct: 29 IEASMWRLGLRGGGGGGET-----FPERPDEPDCIYYLRTGVCGYGSRCRFNHP 77

[Close]

BLAST of Carg13621 vs. TAIR10
Match: AT2G47850.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 19 VSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP 73
          + E++WRL +           S  YP+RPG PDC YYMRTG C YG+ CR+NHP
Sbjct: 28 LQESMWRLGLG----------SDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71

[Close]

BLAST of Carg13621 vs. Swiss-Prot
Match: sp|O48772|C3H26_ARATH (Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=ZFN2 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 123/239 (51.46%), Postives = 151/239 (63.18%), Query Frame = 0


Query: 6   QVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGS 65
           QVQ +    +SPD  E  +R  +  N+D  +  +SSPYPDRPGE DC +++RTG C YG+
Sbjct: 7   QVQNSTGSIRSPDKIEDTFR-RMKVNED--NMEQSSPYPDRPGERDCQFFLRTGQCGYGN 66

Query: 66  NCRFNHPV-YVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGAGPVT 125
           +CR+NHP+  + QG +Y   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GAGPV 
Sbjct: 67  SCRYNHPLTNLPQGIIY---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAGPVL 126

Query: 126 FNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAGTPFM 185
           FN+LG              XXXXXXXXXXXXXXXXXX        Q   G    A + F 
Sbjct: 127 FNVLGLPMRQGEKPCPYYMXXXXXXXXXXXXXXXXXXH------SQPSNGHSAYAMSSF- 186

Query: 186 PSSGLPYASGIPAWSLPRVQY--MPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVVST 242
           PS G PYASG+   SLP   Y  +P P V   Q+Y+P +V+P QG +  Q W TY+ ++
Sbjct: 187 PSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYMTAS 232

[Close]

BLAST of Carg13621 vs. Swiss-Prot
Match: sp|Q94AD9|C3H3_ARATH (Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g04990 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 131/242 (54.13%), Postives = 154/242 (63.64%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           M D   VQ + V  +S D  E  +R ++  N+ G    E +PYPDRPGE DC +Y+RTG 
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFR-KMKVNETG--VEELNPYPDRPGERDCQFYLRTGL 64

Query: 61  CSYGSNCRFNHPVYVAQG-ALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRG 120
           C YGS+CR+NHP ++ Q  A Y   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DR G
Sbjct: 65  CGYGSSCRYNHPTHLPQDVAYYKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNG 124

Query: 121 AGPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSA 180
           A PV      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +           + 
Sbjct: 125 AQPVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXST----------AY 184

Query: 181 GTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVV 240
           G    P++ L YASG+   S     Y   P  Q  QSYVP+LVSP QG +  Q W  Y+ 
Sbjct: 185 GMSSFPAADLRYASGLTMMS----TYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMA 229

Query: 241 ST 242
           ++
Sbjct: 245 AS 229

[Close]

BLAST of Carg13621 vs. Swiss-Prot
Match: sp|Q9SWF9|ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13
Identity = 126/225 (56.00%), Postives = 146/225 (64.89%), Query Frame = 0


Query: 21  EALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP----VYVA 80
           EA+W++    N    +  ES PYP+ PGEPDC YY+RTG C +G+ CRFNHP    + +A
Sbjct: 9   EAMWQM----NLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 68

Query: 81  QGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGAGPVTFNILGXXXXXXX 140
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AG V  NILG   XXXX
Sbjct: 69  TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAGRVALNILG---XXXX 128

Query: 141 XXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAGTPFMPSSGLP----YA 200
           XXXXXXXXXXXXXXXXXXXXXXXXX    NM+   R    GS   P + S   P    YA
Sbjct: 129 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVLSMR----GSTVYPTVQSPTTPGQQSYA 188

Query: 201 SGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTY 238
           +GI  WS     Y+P P  QG  SY P+++  PQG ++   W+TY
Sbjct: 189 AGITNWS--SSSYVPSPRWQGPSSYAPLIL--PQGVVSVPGWSTY 218

[Close]

BLAST of Carg13621 vs. Swiss-Prot
Match: sp|Q2QT65|C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-12
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 21 EALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP 73
          EA+W++ +     GG++ ES+PYP+R GEPDC YYMRTG C +G  C+FNHP
Sbjct: 45 EAMWQMTLG----GGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHP 92

[Close]

BLAST of Carg13621 vs. Swiss-Prot
Match: sp|Q5JLB5|C3H12_ORYSJ (Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0917400 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 118/227 (51.98%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 21  EALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHP----VYVA 80
           E +W+        G  A +  PYP+R GEPDC YY+RTG C +G +CRFNHP    +   
Sbjct: 58  EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLXXX 117

Query: 81  QGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGAGPVTFNILGXXXXXXX 140
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AG V  N LG   XXXX
Sbjct: 118 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIAGRVQLNTLG---XXXX 177

Query: 141 XXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAGTPFMPS------SGLP 200
           XXXXXXXXXXXXXXXXXXXXXXXXX  + N +  +R       G+P  PS      +G P
Sbjct: 178 XXXXXXXXXXXXXXXXXXXXXXXXXXXLFNAMASSR-------GSPIYPSVHSSATAGPP 237

Query: 201 YASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTY 238
           Y   + +W+ PR  ++P P  Q   +Y P++V  PQG +    WN+Y
Sbjct: 238 YTGTMASWAFPRGSFIPSPRWQNPSNYAPMIV--PQGLVQVPSWNSY 269

[Close]

BLAST of Carg13621 vs. TrEMBL
Match: tr|A0A1S3C3U6|A0A1S3C3U6_CUCME (zinc finger CCCH domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103496352 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.2e-82
Identity = 224/238 (94.12%), Postives = 228/238 (95.80%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQR+ VPNQSPD+SEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRHDVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYV QG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+PVGN LPQARPGALGS G
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGNSLPQARPGALGSGG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSG+PY  GIPAWSLPRVQYMPGPCVQGQQSYVPVLVSP QGAIAAQDWNTYV
Sbjct: 181 TPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYV 238

[Close]

BLAST of Carg13621 vs. TrEMBL
Match: tr|A0A0A0KF53|A0A0A0KF53_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G166210 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.3e-80
Identity = 223/238 (93.70%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60
           MPDNLQVQRN VPNQSPD+SEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS
Sbjct: 1   MPDNLQVQRNDVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGS 60

Query: 61  CSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120
           CSYGSNCRFNHPVYV QG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA
Sbjct: 61  CSYGSNCRFNHPVYVGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRGA 120

Query: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSAG 180
           GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+PVGNMLPQARPGALGS G
Sbjct: 121 GPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGNMLPQARPGALGSGG 180

Query: 181 TPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           TPFMPSSG+PY    PAWS+PRVQYMPGPCVQGQQSYVPVLVSP QGAIAAQDWNTYV
Sbjct: 181 TPFMPSSGVPY----PAWSMPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYV 234

[Close]

BLAST of Carg13621 vs. TrEMBL
Match: tr|M5WRX4|M5WRX4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G209200 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.1e-48
Identity = 173/239 (72.38%), Postives = 191/239 (79.92%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSP-DVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 60
           MPD  Q Q+NAVPNQS  +V EA WRL I+DNQDGG  A+S+PYPDRPGEPDC+YY+RTG
Sbjct: 27  MPDTRQAQKNAVPNQSDGNVEEAFWRLTINDNQDGGGVAQSNPYPDRPGEPDCIYYLRTG 86

Query: 61  SCSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRG 120
            C YGSNCRFNHP Y +Q    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DRRG
Sbjct: 87  LCGYGSNCRFNHPKYGSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRG 146

Query: 121 AGPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSA 180
           AGPV FNILG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +G +LP     A G+A
Sbjct: 147 AGPVVFNILGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSLGTVLP-----AFGAA 206

Query: 181 GTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           G+  +PSSGLPYA G+ AWS PR  Y+ GP +Q   SY+PV V PPQG + A  WNTYV
Sbjct: 207 GSTVLPSSGLPYAGGLSAWSFPRAPYLSGPRLQSPHSYMPV-VLPPQGIVPAHGWNTYV 259

[Close]

BLAST of Carg13621 vs. TrEMBL
Match: tr|D7TEE8|D7TEE8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01450 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.8e-48
Identity = 169/239 (70.71%), Postives = 190/239 (79.50%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPN-QSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 60
           M DN QVQ N V N  S +V EA+ RL+I DNQ+ G    SSPYPDRPGEPDC+YY+RTG
Sbjct: 1   MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTG 60

Query: 61  SCSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRG 120
            C YGSNCRFNHP Y  Q    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DR G
Sbjct: 61  LCGYGSNCRFNHPAYSEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRHG 120

Query: 121 AGPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSA 180
           AGPV+ NI+GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA  G +LP   P A GS 
Sbjct: 121 AGPVSLNIVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAGTVLPATGPAAFGST 180

Query: 181 GTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYV 239
           G+  +PSSGLPY  G+PAWSLPR  Y+PGP +QG Q+Y+P+++SP QG + AQ WNTY+
Sbjct: 181 GSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYM 239

[Close]

BLAST of Carg13621 vs. TrEMBL
Match: tr|A0A2I4GA55|A0A2I4GA55_9ROSI (zinc finger CCCH domain-containing protein 12-like isoform X3 OS=Juglans regia OX=51240 GN=LOC109006069 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.3e-47
Identity = 171/250 (68.40%), Postives = 197/250 (78.80%), Query Frame = 0


Query: 1   MPDNLQVQRNAVPNQSPD-VSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 60
           MPDN QVQ+NA PNQS + + EA WRL+I+DNQ+G  AA+S+PYPDRPGEPDCLYY+RTG
Sbjct: 1   MPDNRQVQKNATPNQSANPIEEAFWRLKINDNQEGDGAAQSAPYPDRPGEPDCLYYLRTG 60

Query: 61  SCSYGSNCRFNHPVYVAQGALYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRRG 120
            C YGSNCR+NHP YV+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DRRG
Sbjct: 61  LCGYGSNCRYNHPSYVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRRG 120

Query: 121 AGPVTFNILGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVGNMLPQARPGALGSA 180
           AGPV+FN   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA +G +LP      +GS 
Sbjct: 121 AGPVSFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLGTVLPVTGHADVGSM 180

Query: 181 GTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVV 240
           G+  MPSSGLPY  G+PAWSLPRV Y+ GP   G ++Y+P  +  PQG + AQ WNTY+ 
Sbjct: 181 GSTVMPSSGLPYTGGLPAWSLPRVPYISGPRFPGPETYMPAFL--PQGIVPAQGWNTYMN 240

Query: 241 STRLNEQGLA 250
                 +GL+
Sbjct: 241 LGESASRGLS 248

The following BLAST results are available for this feature:

BLAST of Carg13621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947607.1	1.1e-89	100.00	zinc finger CCCH domain-containing protein 3-like [Cucurbita moschata] >XP_02353...	[more]
XP_022970766.1	2.4e-89	99.58	zinc finger CCCH domain-containing protein 3-like [Cucurbita maxima]	[more]
XP_022149754.1	3.6e-85	95.80	zinc finger CCCH domain-containing protein 3 [Momordica charantia]	[more]
XP_008456401.1	4.8e-82	94.12	PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis melo]	[more]
XP_022985967.1	8.2e-82	93.28	zinc finger CCCH domain-containing protein ZFN-like [Cucurbita maxima]	[more]

BLAST of Carg13621 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32930.2	9.8e-21	51.46	zinc finger nuclease 2	[more]
AT1G04990.2	9.5e-16	54.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G02830.1	2.2e-12	51.92	zinc finger protein 1	[more]
AT5G18550.1	4.9e-12	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G47850.1	3.2e-11	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of Carg13621 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O48772\|C3H26_ARATH	1.8e-19	51.46	Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q94AD9\|C3H3_ARATH	1.7e-14	54.13	Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9SWF9\|ZFNL_PEA	1.1e-13	56.00	Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum OX=3888 PE=...	[more]
sp\|Q2QT65\|C3H66_ORYSJ	4.7e-12	55.77	Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q5JLB5\|C3H12_ORYSJ	2.3e-11	51.98	Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg13621 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3U6\|A0A1S3C3U6_CUCME	3.2e-82	94.12	zinc finger CCCH domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KF53\|A0A0A0KF53_CUCSA	2.3e-80	93.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G166210 PE=4 SV=1	[more]
tr\|M5WRX4\|M5WRX4_PRUPE	5.1e-48	72.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G209200 PE=4 SV=1	[more]
tr\|D7TEE8\|D7TEE8_VITVI	8.8e-48	70.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g01450 PE=4 SV=...	[more]
tr\|A0A2I4GA55\|A0A2I4GA55_9ROSI	3.3e-47	68.40	zinc finger CCCH domain-containing protein 12-like isoform X3 OS=Juglans regia O...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13621-RA	Carg13621-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 88..115 e-value: 3.1E-6 score: 36.7 coord: 135..160 e-value: 6.3E-4 score: 29.1 coord: 46..73 e-value: 1.1E-6 score: 38.2
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 91..115 e-value: 1.2E-9 score: 37.7 coord: 48..72 e-value: 7.7E-11 score: 41.5 coord: 137..160 e-value: 6.6E-10 score: 38.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 88..116 score: 14.915
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 46..74 score: 14.305
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 133..161 score: 13.892
None	No IPR available	GENE3D	G3DSA:2.30.30.1190		coord: 121..171 e-value: 6.0E-9 score: 37.9
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 45..120 e-value: 2.2E-15 score: 58.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR12506	PROTEIN PHOSPHATASE RELATED	coord: 1..238
None	No IPR available	PANTHER	PTHR12506:SF24	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26-RELATED	coord: 1..238
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 132..161
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 93..117
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 51..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13621	Cla013513	Watermelon (97103) v1	carwmB0030
Carg13621	Csa6G166210	Cucumber (Chinese Long) v2	carcuB0026
Carg13621	MELO3C019730	Melon (DHL92) v3.5.1	carmeB0029
Carg13621	ClCG02G018110	Watermelon (Charleston Gray)	carwcgB0029
Carg13621	CSPI06G12980	Wild cucumber (PI 183967)	carcpiB0027
Carg13621	CmaCh20G002370	Cucurbita maxima (Rimu)	carcmaB0040
Carg13621	CmaCh02G000610	Cucurbita maxima (Rimu)	carcmaB0042
Carg13621	CmoCh20G002570	Cucurbita moschata (Rifu)	carcmoB0042
Carg13621	CmoCh02G000600	Cucurbita moschata (Rifu)	carcmoB0044
Carg13621	Lsi10G015670	Bottle gourd (USVL1VR-Ls)	carlsiB027
Carg13621	Cp4.1LG05g15270	Cucurbita pepo (Zucchini)	carcpeB0048
Carg13621	Cp4.1LG16g07460	Cucurbita pepo (Zucchini)	carcpeB0044
Carg13621	CsGy6G013100	Cucumber (Gy14) v2	carcgybB0026
Carg13621	MELO3C019730.2	Melon (DHL92) v3.6.1	carmedB0028
Carg13621	CsaV3_6G015470	Cucumber (Chinese Long) v3	carcucB0027
Carg13621	Cla97C02G043930	Watermelon (97103) v2	carwmbB0024
Carg13621	Bhi10G000799	Wax gourd	carwgoB0036

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13621	Carg03461	Silver-seed gourd	carcarB030

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13621	Silver-seed gourd	carcarB031
Carg13621	Silver-seed gourd	carcarB033
Carg13621	Cucumber (Gy14) v2	carcgybB0029
Carg13621	Cucurbita maxima (Rimu)	carcmaB0037
Carg13621	Cucurbita maxima (Rimu)	carcmaB0039
Carg13621	Cucurbita moschata (Rifu)	carcmoB0038
Carg13621	Cucurbita moschata (Rifu)	carcmoB0041
Carg13621	Cucurbita pepo (Zucchini)	carcpeB0042
Carg13621	Cucurbita pepo (Zucchini)	carcpeB0047
Carg13621	Wild cucumber (PI 183967)	carcpiB0031
Carg13621	Cucumber (Chinese Long) v2	carcuB0029
Carg13621	Cucumber (Chinese Long) v3	carcucB0031
Carg13621	Bottle gourd (USVL1VR-Ls)	carlsiB029
Carg13621	Wax gourd	carwgoB0032