Carg13609 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13609
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor GTE4-like
Location	Cucurbita_argyrosperma_scaffold_053 : 515006 .. 515266 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAGCGCCTATAGCTGGAGGGGGAAATGAAGATAGAATTAAGCAGCATTCTGAGAGTAAGGTTTACAGAAGGAAAACGTTCAGAGGTGTGAAGAATGGGAATACCATTACCGCCTCGTTTAGCAATGTTGAAGGCTTCAATAACAGTTCAGGCCAGGCAGTGCCGCATTCAGAAGCATTGGAAAATGCGAATCTATCGCAGCAGCAGCCTTTACCAAATGCTGCCTCTGACGATTTGACGAGGCTTGATGGATAG

mRNA sequence

ATGGCTTCAGCGCCTATAGCTGGAGGGGGAAATGAAGATAGAATTAAGCAGCATTCTGAGAGTAAGGTTTACAGAAGGAAAACGTTCAGAGGTGTGAAGAATGGGAATACCATTACCGCCTCGTTTAGCAATGTTGAAGGCTTCAATAACAGTTCAGGCCAGGCAGTGCCGCATTCAGAAGCATTGGAAAATGCGAATCTATCGCAGCAGCAGCCTTTACCAAATGCTGCCTCTGACGATTTGACGAGGCTTGATGGATAG

Coding sequence (CDS)

ATGGCTTCAGCGCCTATAGCTGGAGGGGGAAATGAAGATAGAATTAAGCAGCATTCTGAGAGTAAGGTTTACAGAAGGAAAACGTTCAGAGGTGTGAAGAATGGGAATACCATTACCGCCTCGTTTAGCAATGTTGAAGGCTTCAATAACAGTTCAGGCCAGGCAGTGCCGCATTCAGAAGCATTGGAAAATGCGAATCTATCGCAGCAGCAGCCTTTACCAAATGCTGCCTCTGACGATTTGACGAGGCTTGATGGATAG

Protein sequence

MASAPIAGGGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNVEGFNNSSGQAVPHSEALENANLSQQQPLPNAASDDLTRLDG

Homology

[Close]

BLAST of Carg13609 vs. NCBI nr
Match: XP_022970888.1 (transcription factor GTE4-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MASAPIAGGGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNVEGFNNSSGQAVPHSE 60
          MASAPIA GGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNVE FNNSSGQAVPHSE
Sbjct: 1  MASAPIARGGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNVEAFNNSSGQAVPHSE 60

Query: 61 ALENANLSQQQPLPNAASDDLTRLDG 87
          ALE+ANL   QPLPNAASDDLTRL+G
Sbjct: 61 ALEDANL-LHQPLPNAASDDLTRLNG 85

[Close]

BLAST of Carg13609 vs. NCBI nr
Match: XP_022970879.1 (transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970880.1 transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970881.1 transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970884.1 transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970885.1 transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970886.1 transcription factor GTE4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 74/108 (68.52%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNV--------------- 60
           MASAPIA GGNEDRIKQHSESKVYRRKTFRGVKNGNT+TA+ S                 
Sbjct: 1   MASAPIARGGNEDRIKQHSESKVYRRKTFRGVKNGNTVTATLSTTTTTDKDTCXXXXXXX 60

Query: 61  -------EGFNNSSGQAVPHSEALENANLSQQQPLPNAASDDLTRLDG 87
                  E FNNSSGQAVPHSEALE+ANL   QPLPNAASDDLTRL+G
Sbjct: 61  XXXXXXXEAFNNSSGQAVPHSEALEDANL-LHQPLPNAASDDLTRLNG 107

[Close]

BLAST of Carg13609 vs. NCBI nr
Match: XP_022970887.1 (transcription factor GTE4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 74/108 (68.52%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQHSESKVYRRKTFRGVKNGNTITASFSNV--------------- 60
           MASAPIA GGNEDRIKQHSESKVYRRKTFRGVKNGNT+TA+ S                 
Sbjct: 1   MASAPIARGGNEDRIKQHSESKVYRRKTFRGVKNGNTVTATLSTTTTTDKDTCXXXXXXX 60

Query: 61  -------EGFNNSSGQAVPHSEALENANLSQQQPLPNAASDDLTRLDG 87
                  E FNNSSGQAVPHSEALE+ANL   QPLPNAASDDLTRL+G
Sbjct: 61  XXXXXXXEAFNNSSGQAVPHSEALEDANL-LHQPLPNAASDDLTRLNG 107

[Close]

BLAST of Carg13609 vs. NCBI nr
Match: XP_022944097.1 (transcription factor GTE4-like [Cucurbita moschata] >XP_022944098.1 transcription factor GTE4-like [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 9.6e-22
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQ-HSESKVYRRKTFRGVK-------------------------N 60
           MASAPIAGGG++ RIKQ +SE KVYRRKTF+GVK                         N
Sbjct: 1   MASAPIAGGGDDGRIKQRYSECKVYRRKTFKGVKSQNTASXXXXXXXXXXXXXXXPSNRN 60

Query: 61  GNTITASFSNVEGFNNSSGQAVPHSEALENANLSQQQPLPNAAS--DDLTRLDG 87
           G TI+ +FSNV+  NNSS QAVPHSEA E+ANLSQQ+PLPNAAS  DDLTRLDG
Sbjct: 61  GKTISDTFSNVKDLNNSSDQAVPHSEASEDANLSQQEPLPNAASDADDLTRLDG 114

[Close]

BLAST of Carg13609 vs. NCBI nr
Match: XP_022985930.1 (transcription factor GTE4-like [Cucurbita maxima] >XP_022985931.1 transcription factor GTE4-like [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 9.6e-22
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQ-HSESKVYRRKTFRGVK-------------------------N 60
           MASAPIAGGG+E RIKQ +SE KVYRRKTF+GVK                         N
Sbjct: 1   MASAPIAGGGDEGRIKQRYSECKVYRRKTFKGVKSQNTASXXXXXXXXXXXXXXXPSNRN 60

Query: 61  GNTITASFSNVEGFNNSSGQAVPHSEALENANLSQQQPLPNAAS--DDLTRLDG 87
           G TI+ +FSNV+  NN+S QAVPHSEA E+ANLSQQ+PLPNAAS  DDLTRLDG
Sbjct: 61  GKTISDTFSNVKDLNNNSDQAVPHSEASEDANLSQQEPLPNAASDADDLTRLDG 114

[Close]

BLAST of Carg13609 vs. TrEMBL
Match: tr|A0A1S3C3A6|A0A1S3C3A6_CUCME (transcription factor GTE4-like OS=Cucumis melo OX=3656 GN=LOC103496367 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 68/116 (58.62%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQH-SESKVYRRKTFRGVKNGNT---------------------- 60
           MASAPIAGG +E RIKQ  SE KVYRRKTFRGVKN NT                      
Sbjct: 1   MASAPIAGGEDEGRIKQTCSEYKVYRRKTFRGVKNQNTPSVTPSITVSTTTTADKDPNIR 60

Query: 61  ----ITASFSNVEGFNNSSGQAVPH-SEALENANLSQQQPLPNAAS--DDLTRLDG 87
                TA+F+NV+ FNN+S QAVP  SEA E+ANLSQQQPL +AAS  DDLTRLDG
Sbjct: 61  NENATTATFNNVKDFNNNSDQAVPRSSEASEDANLSQQQPLLDAASEGDDLTRLDG 116

[Close]

BLAST of Carg13609 vs. TrEMBL
Match: tr|A0A0A0KFP5|A0A0A0KFP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235550 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 66/115 (57.39%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   MASAPIAGGGNEDRIKQH-SESKVYRRKTFRGVKNGNT---------------------- 60
           MASAPIAGG +E RIKQ  SE KVYRRKTFRGVKN NT                      
Sbjct: 1   MASAPIAGGEDEGRIKQRCSEYKVYRRKTFRGVKNQNTPSVTPSITVSTTTTDKDPNIRN 60

Query: 61  ---ITASFSNVEGFNNSSGQAVPH-SEALENANLSQQQPLPNAAS--DDLTRLDG 87
                A F+NV+ FNN+S QAVP  SEA E ANL QQQPL +AAS  DDLTRLDG
Sbjct: 61  ENATIAKFNNVKDFNNNSDQAVPRSSEASEEANLYQQQPLQDAASEDDDLTRLDG 115

The following BLAST results are available for this feature:

BLAST of Carg13609 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970888.1	9.3e-33	91.86	transcription factor GTE4-like isoform X3 [Cucurbita maxima]	[more]
XP_022970879.1	1.3e-26	68.52	transcription factor GTE4-like isoform X1 [Cucurbita maxima] >XP_022970880.1 tra...	[more]
XP_022970887.1	1.3e-26	68.52	transcription factor GTE4-like isoform X2 [Cucurbita maxima]	[more]
XP_022944097.1	9.6e-22	60.53	transcription factor GTE4-like [Cucurbita moschata] >XP_022944098.1 transcriptio...	[more]
XP_022985930.1	9.6e-22	60.53	transcription factor GTE4-like [Cucurbita maxima] >XP_022985931.1 transcription ...	[more]

BLAST of Carg13609 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13609 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13609 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3A6\|A0A1S3C3A6_CUCME	1.2e-17	58.62	transcription factor GTE4-like OS=Cucumis melo OX=3656 GN=LOC103496367 PE=4 SV=1	[more]
tr\|A0A0A0KFP5\|A0A0A0KFP5_CUCSA	1.4e-16	57.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235550 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13609-RA	Carg13609-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13609	Wax gourd	carwgoB0032
Carg13609	Wax gourd	carwgoB0036
Carg13609	Silver-seed gourd	carcarB031
Carg13609	Silver-seed gourd	carcarB032
Carg13609	Silver-seed gourd	carcarB033
Carg13609	Cucumber (Gy14) v2	carcgybB0026
Carg13609	Cucumber (Gy14) v2	carcgybB0029
Carg13609	Cucumber (Gy14) v1	carcgyB0037
Carg13609	Cucurbita maxima (Rimu)	carcmaB0037
Carg13609	Cucurbita maxima (Rimu)	carcmaB0039
Carg13609	Cucurbita maxima (Rimu)	carcmaB0040
Carg13609	Cucurbita maxima (Rimu)	carcmaB0042
Carg13609	Cucurbita moschata (Rifu)	carcmoB0042
Carg13609	Cucurbita moschata (Rifu)	carcmoB0038
Carg13609	Cucurbita moschata (Rifu)	carcmoB0041
Carg13609	Cucurbita moschata (Rifu)	carcmoB0044
Carg13609	Cucurbita pepo (Zucchini)	carcpeB0042
Carg13609	Cucurbita pepo (Zucchini)	carcpeB0044
Carg13609	Cucurbita pepo (Zucchini)	carcpeB0047
Carg13609	Cucurbita pepo (Zucchini)	carcpeB0048
Carg13609	Wild cucumber (PI 183967)	carcpiB0027
Carg13609	Wild cucumber (PI 183967)	carcpiB0031
Carg13609	Cucumber (Chinese Long) v2	carcuB0026
Carg13609	Cucumber (Chinese Long) v2	carcuB0029
Carg13609	Cucumber (Chinese Long) v3	carcucB0027
Carg13609	Cucumber (Chinese Long) v3	carcucB0031
Carg13609	Bottle gourd (USVL1VR-Ls)	carlsiB027
Carg13609	Bottle gourd (USVL1VR-Ls)	carlsiB029
Carg13609	Melon (DHL92) v3.5.1	carmeB0029
Carg13609	Melon (DHL92) v3.6.1	carmedB0028
Carg13609	Watermelon (Charleston Gray)	carwcgB0029
Carg13609	Watermelon (97103) v1	carwmB0030
Carg13609	Watermelon (97103) v2	carwmbB0024