Carg13472 (gene) Silver-seed gourd

NameCarg13472
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEcotropic viral integration site protein
LocationCucurbita_argyrosperma_scaffold_049 : 647233 .. 648657 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTCACAATTTCCCTCCACTTTCGCTCTTATTTCCCTATGTTCATTTCATTTCCTGTGATTTACCTTGTATGGCTTTCTAATTCTGTTCGTGATTGGATCGCTGGAACTTGCCTCATGATTGATGAAACATTTTGTGATTTTATAAGTGTCGGGGTTTCAAGACGATGGATCTAACCTCATTCATGGGGAGGAGAACGAAACACTTTTTATAAGGGGTGAAAACTTCTCCCTAGTAGATGCGTTTTAAAAATGTTGAGGGAAAATCCAAAATGCAAGGCACAAAGAGGACAGTTTTTGGTAACGGTGAACTTAAAACGTTGCATTATAGGTTTACACTAGAGTTGGGAAAGGCTGGGAATAGGTAACTTAGGGAGAGGAACATAATATCTTGATGAAATTGCTGTAGAGATTCACACCACATGATTTTCGTCACACTGTTCCCTTAGGGAATTGCTCTGGGAAGCAGTTACGTATTCTGATTGTTTGGCACCTAATTAATACAGTGAGTAGAAAATTTCTAGTCTATAACGGTCAACACCTTTGCCTTTCTTTGACCATGTAATGAGAAGAGAAAGTTTCCAAACTTGTTATGAACTTATGATCCACCCCTTTGGACGTAGGTTGTATTCACCTTCACGTTTGGGTACGGTATTATGTTTTTTGTTTCAATGAGTACCCATTGTGTAGTATGTTGGAAACTGCGATCCTCCACCGATAATGTCCACCTTTTAGCATAAGCTCTTATAGCAGCTTTACTTTTGGTTCTCAAAAGGCTTTGTACCAATGGAGATAGTGTTCCTTACTTATAAATTCATGCTCTTCTTCTTAATTAGTCGAGGCAGGACTAATTCTTTCAAAAATCCTCGGCATAAGTCCTAGCCAGGAAATGTTTTGAGCTTCTCTGCTCTTTTCTTTCCTAAGATACAATTATCTTGCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAGTCCGTCTGGTTTCCTTCATAAACTCATTGCATTTATCAACATTTTCTTGAAGAGATTGAATCTAATGTCTAAAAAGTCCATTTCCTATCTATTCAGATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

mRNA sequence

ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAGTCCGTCTGATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

Coding sequence (CDS)

ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAGTCCGTCTGATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

Protein sequence

MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRLMELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSETEKNCAS
BLAST of Carg13472 vs. NCBI nr
Match: XP_023004866.1 (uncharacterized protein LOC111498046 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.4e-58
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA
Sbjct: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120

Query: 121 GENSETEKNCAS 133
           GENSETEKNCAS
Sbjct: 121 GENSETEKNCAS 129

BLAST of Carg13472 vs. NCBI nr
Match: XP_022960425.1 (uncharacterized protein LOC111461159 [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 3.1e-56
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL-GLEVTKVPSKSLKQLDEVR 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL GLEVTKVPSKSLKQLDE  
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALFGLEVTKVPSKSLKQLDE-- 60

Query: 61  LMELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTAS 120
            MELAKELDKLSEKLDDV+EMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTAS
Sbjct: 61  -MELAKELDKLSEKLDDVNEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTAS 120

Query: 121 AGENSETEKNCAS 133
           AGENSETEKNCAS
Sbjct: 121 AGENSETEKNCAS 130

BLAST of Carg13472 vs. NCBI nr
Match: XP_023514533.1 (uncharacterized protein LOC111778791 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.9 bits (577), Expect = 4.1e-56
Identity = 126/132 (95.45%), Postives = 127/132 (96.21%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MA  WKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAGTWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA
Sbjct: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120

Query: 121 GENSETEKNCAS 133
           GENSETEK+CAS
Sbjct: 121 GENSETEKSCAS 129

BLAST of Carg13472 vs. NCBI nr
Match: XP_022953424.1 (uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 uncharacterized protein LOC111806741 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 7.5e-50
Identity = 115/132 (87.12%), Postives = 121/132 (91.67%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS 
Sbjct: 61  LEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120

Query: 121 GENSETEKNCAS 133
           GENSETE+NC S
Sbjct: 121 GENSETEENCGS 129

BLAST of Carg13472 vs. NCBI nr
Match: XP_022991943.1 (uncharacterized protein LOC111488434 [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 113/130 (86.92%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E++KELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS 
Sbjct: 61  LEISKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASV 120

Query: 121 GENSETEKNC 131
           GENSETE+NC
Sbjct: 121 GENSETEENC 127

BLAST of Carg13472 vs. TAIR10
Match: AT2G44360.1 (unknown protein)

HSP 1 Score: 156.8 bits (395), Expect = 9.5e-39
Identity = 88/120 (73.33%), Postives = 101/120 (84.17%), Query Frame = 0

Query: 6   KADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRLMELAK 65
           K DEQLFQLL+ LL QVESLTN EEVELR KIEALGLEVTKVPSKS + L+EV   E+AK
Sbjct: 5   KPDEQLFQLLSGLLQQVESLTNTEEVELRSKIEALGLEVTKVPSKSAQHLNEV---EIAK 64

Query: 66  ELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSE 125
           ELDKLS KLDDVDEMISSA+A+DPQVQ+LLS TAD+WMPVITA  ++R  FTAS  ++ +
Sbjct: 65  ELDKLSAKLDDVDEMISSAIASDPQVQTLLSGTADVWMPVITAGAEERLNFTASLADDDD 121

BLAST of Carg13472 vs. TrEMBL
Match: tr|A0A0A0KBJ8|A0A0A0KBJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 113/132 (85.61%), Postives = 119/132 (90.15%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MA + KADEQLFQLLA+LLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLANLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELDKLSEKLD+VDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RR FT S 
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTPSV 120

Query: 121 GENSETEKNCAS 133
           GENSETE NC S
Sbjct: 121 GENSETEANCES 129

BLAST of Carg13472 vs. TrEMBL
Match: tr|A0A1S3CEA0|A0A1S3CEA0_CUCME (uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.5e-46
Identity = 110/132 (83.33%), Postives = 117/132 (88.64%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MA + KADEQLFQLLA LLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAHEGKADEQLFQLLAGLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELDKLSEKLD+VDEMISSAMA+DPQVQSLLS TADIWMPVITAS D+RR FT+S 
Sbjct: 61  LEIAKELDKLSEKLDNVDEMISSAMASDPQVQSLLSDTADIWMPVITASADERRNFTSSV 120

Query: 121 GENSETEKNCAS 133
           GEN ETE N  S
Sbjct: 121 GENPETEANRGS 129

BLAST of Carg13472 vs. TrEMBL
Match: tr|A0A2P5E6J0|A0A2P5E6J0_9ROSA (Ecotropic viral integration site protein OS=Trema orientalis OX=63057 GN=TorRG33x02_230450 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 96/124 (77.42%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MAE+ KADEQLFQLL+ LLHQVE+LTNQEEVELR KIEALGLEVTKVPSKS + LDE   
Sbjct: 1   MAEEGKADEQLFQLLSGLLHQVETLTNQEEVELRSKIEALGLEVTKVPSKSTQLLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELDKLS KLDDVDEMISSAMA+DPQVQSLLS TAD+WMPVITA+ D+RR FT+S 
Sbjct: 61  LEIAKELDKLSAKLDDVDEMISSAMASDPQVQSLLSGTADVWMPVITATADERRNFTSSI 120

Query: 121 GENS 125
            +++
Sbjct: 121 ADDN 121

BLAST of Carg13472 vs. TrEMBL
Match: tr|A0A2P5D7B1|A0A2P5D7B1_PARAD (Ecotropic viral integration site protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_089160 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-40
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MAE+ KADEQLFQLL+ LLHQVE+LTNQEEVELR KIEALGLEVTKVPSKS + LDE   
Sbjct: 1   MAEEGKADEQLFQLLSGLLHQVETLTNQEEVELRSKIEALGLEVTKVPSKSTQHLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELDKLS KLDDVDEMISSAMA+DPQVQSLLS TAD+W+PVITA+ D+RR FT+S 
Sbjct: 61  LEIAKELDKLSAKLDDVDEMISSAMASDPQVQSLLSGTADVWVPVITATADERRNFTSSI 120

Query: 121 GENS 125
            +++
Sbjct: 121 ADDN 121

BLAST of Carg13472 vs. TrEMBL
Match: tr|A0A072V8K2|A0A072V8K2_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25486852 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 7.9e-40
Identity = 95/124 (76.61%), Postives = 109/124 (87.90%), Query Frame = 0

Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60
           MAE+ K D QLFQLL++LL QVE+LTNQEEVELR KIE LGLEVTKVPSKS KQLDE   
Sbjct: 1   MAEEGKPDAQLFQLLSNLLLQVEALTNQEEVELRSKIETLGLEVTKVPSKSTKQLDE--- 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           +E+AKELD+LS KLDDVDEMISS MA DPQVQSLLS TAD+WMPVITA++++RRKFTAS 
Sbjct: 61  LEIAKELDRLSAKLDDVDEMISSTMATDPQVQSLLSSTADVWMPVITANSEERRKFTASP 120

Query: 121 GENS 125
           G+N+
Sbjct: 121 GDNN 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023004866.13.4e-5897.73uncharacterized protein LOC111498046 [Cucurbita maxima][more]
XP_022960425.13.1e-5696.24uncharacterized protein LOC111461159 [Cucurbita moschata][more]
XP_023514533.14.1e-5695.45uncharacterized protein LOC111778791 [Cucurbita pepo subsp. pepo][more]
XP_022953424.17.5e-5087.12uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 unchar... [more]
XP_022991943.13.7e-4986.92uncharacterized protein LOC111488434 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G44360.19.5e-3973.33unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KBJ8|A0A0A0KBJ8_CUCSA1.2e-4885.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1[more]
tr|A0A1S3CEA0|A0A1S3CEA0_CUCME1.5e-4683.33uncharacterized protein LOC103499886 OS=Cucumis melo OX=3656 GN=LOC103499886 PE=... [more]
tr|A0A2P5E6J0|A0A2P5E6J0_9ROSA2.1e-4077.42Ecotropic viral integration site protein OS=Trema orientalis OX=63057 GN=TorRG33... [more]
tr|A0A2P5D7B1|A0A2P5D7B1_PARAD3.6e-4076.61Ecotropic viral integration site protein OS=Parasponia andersonii OX=3476 GN=Pan... [more]
tr|A0A072V8K2|A0A072V8K2_MEDTR7.9e-4076.61Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25486852 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13472-RACarg13472-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..87
NoneNo IPR availablePANTHERPTHR37727FAMILY NOT NAMEDcoord: 1..128

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13472Carg18706Silver-seed gourdcarcarB379