Carg13420 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13420
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box/WD-40 repeat-containing protein At3g52030
Location	Cucurbita_argyrosperma_scaffold_049 : 361306 .. 362336 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACCAATCCTTTCCCCGTCCGTGAATCAGCTTCCGAACAACACCGGCGATGGCTCCTCCAACGGTCGCCGACCGATCCTCGGCGAGAAGGCGGAGTAATATTGATGCAAAACCAGTTTACTCCCTAAGTCACGACATCTTGTGCATAATCTTTTCGTTCCTCGACCTTTTCGACTTGGTTCGATGTTCAGTTGTTTGTAAATCCTGGTACTCATTTTATCTGTTACCTATGAAGAAAGAAGGGAGTAGAAAGCGTGGTTAATTTGTTTGATTTAGTTGCAGTTTATTTTTCCCGTTAATTTGATATCTCTAACGAAATTTTGAATGTTCTTGAAGGAATAATGCTATTTTTAATTCCGAACTATTGCGAACATTTTGCATGAAGCATCAGAAGCAGGAGATGGAGTCTTCTAGCTCTTTTGAAGTATCAGCTTCTTCGGAGAAACCATTGTTGGAATGTTTAGAGGAAATAGCGATGGAACGACACAAGTTGGCGTTGGAAGAAGGTCGTATAAGAGTTTCTCAATGGATGGGCCATTCAGTGAGGTAACTTTGGCAAGATGGACAGTCATTCTAGATATTATTTGTGAATTATATACTGCCTCTGTTCATTAATCATACTTGTTATGGAGCATCTGAAGTTAGGAGTTTGATTGCTGCATTTTCAGTTTAAATCGCTTCCTTACTTTACTGTTTTACGTTTCCCTCTCTGGATTTATCTATAGCTGATAATTCTTTATCCTCGGACCTGTTACTGTATACAAATCTTTCTAATCAATATACTTTTTGTATTTCCTTTCGGTAAACAATCAAAACAATCTGACAAAGTGTTTGTCGGTTGTTTTGTTGCGTTGTTCTTAATGGAAAAATATTTTGAAATTCTCATTAGCATTTCGTATTACTGTGCAGATTATCGTTTCTTTTGTTTTTGGTTTGCATAATAACTCACGTAACATGGATTTCTATATAGGGCTGAACAATGCCGAATGAAGATGGGTTTGATTCTTACAGGAGTGGGTGATAAAGTATAG

mRNA sequence

TCACCAATCCTTTCCCCGTCCGTGAATCAGCTTCCGAACAACACCGGCGATGGCTCCTCCAACGGTCGCCGACCGATCCTCGGCGAGAAGGCGGAGTAATATTGATGCAAAACCAGTTTACTCCCTAAGTCACGACATCTTGTGCATAATCTTTTCGTTCCTCGACCTTTTCGACTTGGTTCGATGTTCAGTTGTTTGTAAATCCTGGAATAATGCTATTTTTAATTCCGAACTATTGCGAACATTTTGCATGAAGCATCAGAAGCAGGAGATGGAGTCTTCTAGCTCTTTTGAAGTATCAGCTTCTTCGGAGAAACCATTGTTGGAATGTTTAGAGGAAATAGCGATGGAACGACACAAGTTGGCGTTGGAAGAAGGTCGTATAAGAGTTTCTCAATGGATGGGCCATTCAGTGAGGGCTGAACAATGCCGAATGAAGATGGGTTTGATTCTTACAGGAGTGGGTGATAAAGTATAG

Coding sequence (CDS)

ATGGCTCCTCCAACGGTCGCCGACCGATCCTCGGCGAGAAGGCGGAGTAATATTGATGCAAAACCAGTTTACTCCCTAAGTCACGACATCTTGTGCATAATCTTTTCGTTCCTCGACCTTTTCGACTTGGTTCGATGTTCAGTTGTTTGTAAATCCTGGAATAATGCTATTTTTAATTCCGAACTATTGCGAACATTTTGCATGAAGCATCAGAAGCAGGAGATGGAGTCTTCTAGCTCTTTTGAAGTATCAGCTTCTTCGGAGAAACCATTGTTGGAATGTTTAGAGGAAATAGCGATGGAACGACACAAGTTGGCGTTGGAAGAAGGTCGTATAAGAGTTTCTCAATGGATGGGCCATTCAGTGAGGGCTGAACAATGCCGAATGAAGATGGGTTTGATTCTTACAGGAGTGGGTGATAAAGTATAG

Protein sequence

MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNSELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGHSVRAEQCRMKMGLILTGVGDKV

Homology

[Close]

BLAST of Carg13420 vs. NCBI nr
Match: XP_022960484.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita moschata])

HSP 1 Score: 280.0 bits (715), Expect = 4.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS
Sbjct: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH
Sbjct: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVRAEQCRMKMGLILTGVGDKV
Sbjct: 121 SVRAEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. NCBI nr
Match: XP_023513731.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS
Sbjct: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQW+GH
Sbjct: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVRAEQCRMKMGLILTGVGDKV
Sbjct: 121 SVRAEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. NCBI nr
Match: XP_023004546.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 2.4e-70
Identity = 138/142 (97.18%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           MAPPTVADRSSA+RRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS
Sbjct: 1   MAPPTVADRSSAKRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           ELLRTFCMKHQKQEMESSSSF+VS SSEKPLLECLEEIAMERHKLALEEGRIRVSQW+GH
Sbjct: 61  ELLRTFCMKHQKQEMESSSSFKVSVSSEKPLLECLEEIAMERHKLALEEGRIRVSQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVRAEQCRMKMGLILTGVGDKV
Sbjct: 121 SVRAEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. NCBI nr
Match: XP_004135950.1 (PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Cucumis sativus] >KGN45091.1 hypothetical protein Csa_7G420840 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 4.3e-59
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           M PP  ADRSSARRRS++DAKPV+SLSHDILCIIFSFLDLFDLVRC  VCKSWN AI+ S
Sbjct: 1   MTPPPTADRSSARRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLGVCKSWNYAIYKS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           E+LRTFC+++QKQEM S+S+ EVS S EKPLLECLEEIAMERHKLALE+GRIRVSQW+GH
Sbjct: 61  EILRTFCLRYQKQEMNSASTSEVSFSLEKPLLECLEEIAMERHKLALEKGRIRVSQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVR EQCRMKMGLILTGVGDKV
Sbjct: 121 SVRVEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. NCBI nr
Match: XP_008461347.1 (PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           MAPP  ADRSS RRRS++DAKPV+SLSHDILCIIFSFLDLFDLVRC  VCKSWN AI+ S
Sbjct: 1   MAPPPTADRSSMRRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLAVCKSWNYAIYKS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           E+LRTFC+++QKQEM S+S+ +VS S EKPLL+CLEEIAMERHKLALE+GRIRV QW+GH
Sbjct: 61  EILRTFCLRYQKQEMNSASTSKVSFSLEKPLLDCLEEIAMERHKLALEKGRIRVYQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVRAEQCRMKMGLILTGVGDKV
Sbjct: 121 SVRAEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. TAIR10
Match: AT3G52030.1 (F-box family protein with WD40/YVTN repeat doamin)

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-29
Identity = 71/142 (50.00%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           M      D SSAR+        + SL  DILCIIFSFLDLFDLV C+VVC SWN  I   
Sbjct: 1   MGRTETGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRL 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           +LL+  C K      +S SS   S S ++P    +E+ AM+ HK+AL  GRI + +W  H
Sbjct: 61  KLLQASCRKMHHLGSDSPSS---STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           S R  QCRMK GL+LTGVGDKV
Sbjct: 121 SHRVSQCRMKKGLLLTGVGDKV 139

[Close]

BLAST of Carg13420 vs. Swiss-Prot
Match: sp|Q9SV01|FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 GN=At3g52030 PE=4 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-28
Identity = 71/142 (50.00%), Postives = 86/142 (60.56%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           M      D SSAR+        + SL  DILCIIFSFLDLFDLV C+VVC SWN  I   
Sbjct: 1   MGRTETGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRL 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           +LL+  C K      +S SS   S S ++P    +E+ AM+ HK+AL  GRI + +W  H
Sbjct: 61  KLLQASCRKMHHLGSDSPSS---STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           S R  QCRMK GL+LTGVGDKV
Sbjct: 121 SHRVSQCRMKKGLLLTGVGDKV 139

[Close]

BLAST of Carg13420 vs. TrEMBL
Match: tr|A0A0A0KBD6|A0A0A0KBD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420840 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.8e-59
Identity = 118/142 (83.10%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           M PP  ADRSSARRRS++DAKPV+SLSHDILCIIFSFLDLFDLVRC  VCKSWN AI+ S
Sbjct: 1   MTPPPTADRSSARRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLGVCKSWNYAIYKS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           E+LRTFC+++QKQEM S+S+ EVS S EKPLLECLEEIAMERHKLALE+GRIRVSQW+GH
Sbjct: 61  EILRTFCLRYQKQEMNSASTSEVSFSLEKPLLECLEEIAMERHKLALEKGRIRVSQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVR EQCRMKMGLILTGVGDKV
Sbjct: 121 SVRVEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. TrEMBL
Match: tr|A0A1S3CEH9|A0A1S3CEH9_CUCME (F-box/WD-40 repeat-containing protein At3g52030 OS=Cucumis melo OX=3656 GN=LOC103499956 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 116/142 (81.69%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           MAPP  ADRSS RRRS++DAKPV+SLSHDILCIIFSFLDLFDLVRC  VCKSWN AI+ S
Sbjct: 1   MAPPPTADRSSMRRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLAVCKSWNYAIYKS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           E+LRTFC+++QKQEM S+S+ +VS S EKPLL+CLEEIAMERHKLALE+GRIRV QW+GH
Sbjct: 61  EILRTFCLRYQKQEMNSASTSKVSFSLEKPLLDCLEEIAMERHKLALEKGRIRVYQWIGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SVRAEQCRMKMGLILTGVGDKV
Sbjct: 121 SVRAEQCRMKMGLILTGVGDKV 142

[Close]

BLAST of Carg13420 vs. TrEMBL
Match: tr|A0A2I4ECY0|A0A2I4ECY0_9ROSI (F-box/WD-40 repeat-containing protein At3g52030 OS=Juglans regia OX=51240 GN=LOC108988437 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.5e-31
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 0


Query: 1   MAPPTVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNS 60
           M P    +RS ++R  +     + SL HDILC+IF+FLD FDL+RCSVVCK WN  I  S
Sbjct: 1   MGPAPAGERSQSKRIKSGGTTAIQSLDHDILCMIFAFLDFFDLIRCSVVCKFWNTIISKS 60

Query: 61  ELLRTFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGH 120
           +LL+ F  K Q+  M+ +++   +  SE+ L   LE++AME H+L+L EG I V  W GH
Sbjct: 61  KLLQIFYSKQQRNSMDFTNN---TTYSERSLKMYLEKLAMEHHRLSLLEGMIDVDHWKGH 120

Query: 121 SVRAEQCRMKMGLILTGVGDKV 143
           SV  +QCRMKMGLILTGVGDKV
Sbjct: 121 SVGVDQCRMKMGLILTGVGDKV 139

[Close]

BLAST of Carg13420 vs. TrEMBL
Match: tr|A5BAL7|A5BAL7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013775 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 5   TVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNSELLR 64
           T AD  S  ++      P  SL+HDILC+IF  LDLFDLVRCS VCKSWN  I  S+LL+
Sbjct: 4   TTADGQSQAQKRMSSRVPATSLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINKSKLLQ 63

Query: 65  TFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGHSVRA 124
               K Q   +  SS+   S  SEKPL  C+E++AME H+L+L +G I + QW GHSVRA
Sbjct: 64  ILYHKQQGGSIGPSST---SHCSEKPLKVCIEQLAMEHHRLSL-QGLIDIEQWKGHSVRA 123

Query: 125 EQCRMKMGLILTGVGDK 142
            QCRMKMGLILTGVGDK
Sbjct: 124 GQCRMKMGLILTGVGDK 136

[Close]

BLAST of Carg13420 vs. TrEMBL
Match: tr|D7T397|D7T397_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00010 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-30
Identity = 78/137 (56.93%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 5   TVADRSSARRRSNIDAKPVYSLSHDILCIIFSFLDLFDLVRCSVVCKSWNNAIFNSELLR 64
           T AD  S  ++      P  SL+HDILC+IF  LDLFDLVRCS VCKSWN  I  S+LL+
Sbjct: 4   TTADGQSQAQKRMSSRVPATSLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINKSKLLQ 63

Query: 65  TFCMKHQKQEMESSSSFEVSASSEKPLLECLEEIAMERHKLALEEGRIRVSQWMGHSVRA 124
               K Q   +  SS+   S  SEKPL  C+E++AME H+L+L +G I + QW GHSVRA
Sbjct: 64  ILYHKQQGGSIGPSST---SHCSEKPLKVCIEQLAMEHHRLSL-QGLIDIEQWKGHSVRA 123

Query: 125 EQCRMKMGLILTGVGDK 142
            QCRMKMGLILTGVGDK
Sbjct: 124 GQCRMKMGLILTGVGDK 136

The following BLAST results are available for this feature:

BLAST of Carg13420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960484.1	4.4e-72	100.00	F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita moschata]	[more]
XP_023513731.1	1.3e-71	99.30	F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita pepo subsp...	[more]
XP_023004546.1	2.4e-70	97.18	F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita maxima]	[more]
XP_004135950.1	4.3e-59	83.10	PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Cucumis sativus] >KG...	[more]
XP_008461347.1	2.8e-58	81.69	PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 [Cucumis melo]	[more]

BLAST of Carg13420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52030.1	3.3e-29	50.00	F-box family protein with WD40/YVTN repeat doamin	[more]

BLAST of Carg13420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SV01\|FBW4_ARATH	5.9e-28	50.00	F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg13420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBD6\|A0A0A0KBD6_CUCSA	2.8e-59	83.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420840 PE=4 SV=1	[more]
tr\|A0A1S3CEH9\|A0A1S3CEH9_CUCME	1.8e-58	81.69	F-box/WD-40 repeat-containing protein At3g52030 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4ECY0\|A0A2I4ECY0_9ROSI	9.5e-31	52.11	F-box/WD-40 repeat-containing protein At3g52030 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A5BAL7\|A5BAL7_VITVI	2.1e-30	56.93	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013775 PE=4 SV=1	[more]
tr\|D7T397\|D7T397_VITVI	2.1e-30	56.93	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00010 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13420-RA	Carg13420-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 26..66 e-value: 1.2E-7 score: 41.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 25..67 e-value: 4.7E-10 score: 39.0
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 20..66 score: 9.63
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 9..108 e-value: 6.8E-13 score: 50.4
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 22..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13420	Cla015210	Watermelon (97103) v1	carwmB0450
Carg13420	Csa7G420840	Cucumber (Chinese Long) v2	carcuB0484
Carg13420	ClCG09G004430	Watermelon (Charleston Gray)	carwcgB0442
Carg13420	CSPI07G18880	Wild cucumber (PI 183967)	carcpiB0489
Carg13420	Cucsa.128200	Cucumber (Gy14) v1	carcgyB0521
Carg13420	CmaCh08G005070	Cucurbita maxima (Rimu)	carcmaB0628
Carg13420	CmoCh08G004990	Cucurbita moschata (Rifu)	carcmoB0610
Carg13420	Lsi02G025420	Bottle gourd (USVL1VR-Ls)	carlsiB409
Carg13420	Cp4.1LG17g07920	Cucurbita pepo (Zucchini)	carcpeB0632
Carg13420	CsGy7G017300	Cucumber (Gy14) v2	carcgybB0461
Carg13420	MELO3C023585.2	Melon (DHL92) v3.6.1	carmedB0458
Carg13420	CsaV3_7G030710	Cucumber (Chinese Long) v3	carcucB0486
Carg13420	Cla97C09G166780	Watermelon (97103) v2	carwmbB0474
Carg13420	Bhi09G000590	Wax gourd	carwgoB0546

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13420	Watermelon (Charleston Gray)	carwcgB0443
Carg13420	Watermelon (97103) v1	carwmB0452
Carg13420	Watermelon (97103) v2	carwmbB0471
Carg13420	Wax gourd	carwgoB0542
Carg13420	Silver-seed gourd	carcarB453
Carg13420	Silver-seed gourd	carcarB454
Carg13420	Cucumber (Gy14) v2	carcgybB0460
Carg13420	Cucurbita maxima (Rimu)	carcmaB0624
Carg13420	Cucurbita maxima (Rimu)	carcmaB0625
Carg13420	Cucurbita maxima (Rimu)	carcmaB0626
Carg13420	Cucurbita moschata (Rifu)	carcmoB0607
Carg13420	Cucurbita moschata (Rifu)	carcmoB0608
Carg13420	Cucurbita moschata (Rifu)	carcmoB0609
Carg13420	Cucurbita pepo (Zucchini)	carcpeB0631
Carg13420	Cucurbita pepo (Zucchini)	carcpeB0633
Carg13420	Cucurbita pepo (Zucchini)	carcpeB0634
Carg13420	Wild cucumber (PI 183967)	carcpiB0488
Carg13420	Cucumber (Chinese Long) v2	carcuB0483
Carg13420	Cucumber (Chinese Long) v3	carcucB0485
Carg13420	Bottle gourd (USVL1VR-Ls)	carlsiB410
Carg13420	Melon (DHL92) v3.5.1	carmeB0455
Carg13420	Melon (DHL92) v3.5.1	carmeB0457
Carg13420	Melon (DHL92) v3.6.1	carmedB0460