Carg13322 (gene) Silver-seed gourd

Overview
NameCarg13322
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_038 : 951481 .. 953254 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGTTGAGATCCACAGAGAGTTTGATGGCCACAGCTATCAGGGTTAGAGAAGTAGAGTTAAGAGTGAAGAACTTACAAGGGAACCAGAATTTTCTGTGGCGGAAGCCGTGGACAAGATCGGCAGCCATTGCTAAGAGGCAGACCAAAGAGGCTGTGGCTATGTAGATGCCAATCCATGGCATGGGCTCGCTGAACTTGGCATCATTCAGGTATCCATCGTTGCTGCAACCAACCACTCCCATGTTTCTCTCTTTTTGAGCTTCCTTTTCCGCTTGTGTATCTGATCTGATCAATTTTATCCAATTTCTGCTCTTATTGAAGAGGTGGTTTCTGTGTCAATCCTTTATGTCTTTCCATTGTCTGGTTCAGTGCCGGTTATGATGAACATTTTCCCCTTTTATGGATAGTCAACGTGGGCCAATTACAATACTGGCCACTTCATAGCTTTAATAATTGAAGGGAAGTTCGAAGGAGTCTTCTATTTCTTACCCTTTAGTAGCCTGACTTTTAAAAACATTTTGACATTTTCACCATTAAATTCAACATCTTGAGGTAGCTGTTTTGGACTTGTGAAGATTAAAGAATCTGGACATTGGATTCTACAAGCTATTTATCTTATTGATCAAGGCTTATTGGAAGAAGTCAAAGTCCTAGAAAAATCAACATCCCACCTCGGTTGGAGAAGAGAACAAATCATTCCTTATAAGAGTGTGGAAAACCCTCCCTAGTAGACGCGTCTTAAAACTGTGAGGATGGCGGCGATACGTATTTGCTAGTAGTGAGTTTAGACTATTACAAATGGTATCAGAGTTTGACATCGAGTGATGTGCCAGTAAGTCCCCATTGGTTGGAAAGGGGAACAAAGCATTTCTTATAAGGGTGTAGAAACCTCTCCCTAATAAATACATTTTAAAACAGTGAGACTGACGGCGATACATAAAGGGTCAAAACAGACAATATATGTGCTAGTGGTGAGTTTGAGTTGTTACAATATTTCTGTTTGGCTGTGGTTAGTTTCGGGAGTCCAACATACCGATAGGCTTCAGCTAAACTGCCTTGAATTCTTTTGTTTGCTTTTTCCTTTTGGTAGGACAAGATCTTTTTCTTTTTCTGTTCTTTTGAGTGGTAAAAGTTGGGAAAAACCGGTGAAATTTTTTGAATTAGTTTCAGGCGTTGACAGAAGTTTGAAGGAGAACATGCCATTGGAAGAGACCAAACAACTCCTAAAGATAAAATATTGTAAGTGATTCTGAAAGATTTGGGTCGGCTAAAGCTTACGCTTCAGCTTTTTTGTTATTTTGCATACTCTTCTTTTTATAAGTAGAATTGCTTTGACATTTACCACTTTTCCTAATTATTCCTTTTGAGTCTTATTCATCGCAGGTGGAGCCTTTCTCGTGTAAACTGTAAAAGTTTTCTTGTTGGGTTGAGCAAGGTATGGCCTAGCTTTTTCTCGTTTGTGGGAGATTTCAACCTTTTTAGTTCGTTTAGTTCCATATGGCTTGATTTTTTCATGATATACCTATTATAATGGAGGGCCCCTTCTGTACATGATTGATATAGTCACTACCTAGTGGGGGTCGGACAAATTGATGTGAAAGAGATAGAGTGCAGTTTAATCTTGTTGTGGCATCTTTCTCATTGATCGGTTCGCCTCCACTCGAGGAAAAGGTCTCCATTTCTACCACACTTTTGCTATCACTAACTTTGACATGTATTCTCTTTACAGCCATGAGTAAGGTGTTTTTTTTTTTTTTAGAATCAATGA

mRNA sequence

ATGGAGGTGTTGAGATCCACAGAGAGTTTGATGGCCACAGCTATCAGGGTTAGAGAAGTAGAGTTAAGAGTGAAGAACTTACAAGGGAACCAGAATTTTCTGTGGCGGAAGCCGTGGACAAGATCGGCAGCCATTGCTAAGAGGCAGACCAAAGAGGCTGTGGCTATGTGGAGCCTTTCTCGTGTAAACTGTAAAAGTTTTCTTGTTGGGTTGAGCAAGAATCAATGA

Coding sequence (CDS)

ATGGAGGTGTTGAGATCCACAGAGAGTTTGATGGCCACAGCTATCAGGGTTAGAGAAGTAGAGTTAAGAGTGAAGAACTTACAAGGGAACCAGAATTTTCTGTGGCGGAAGCCGTGGACAAGATCGGCAGCCATTGCTAAGAGGCAGACCAAAGAGGCTGTGGCTATGTGGAGCCTTTCTCGTGTAAACTGTAAAAGTTTTCTTGTTGGGTTGAGCAAGAATCAATGA

Protein sequence

MEVLRSTESLMATAIRVREVELRVKNLQGNQNFLWRKPWTRSAAIAKRQTKEAVAMWSLSRVNCKSFLVGLSKNQ
Homology
[Close]
BLAST of Carg13322 vs. NCBI nr
Match: KVH99869.1 (hypothetical protein Ccrd_021899 [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 5   RSTESLMATAIRVREVELRVKNLQGNQNFLWRKPWTRSAAIAKRQTKEAVAMWS 59
           RST S  ATAI V EV LRVKNL GNQ+F WRKPW  SAAIA+ Q ++A+A +S
Sbjct: 89  RSTGSFSATAINVMEVALRVKNLHGNQSFRWRKPWKTSAAIARVQRRDAIATYS 142

[Close]
BLAST of Carg13322 vs. TrEMBL
Match: tr|A0A103XZR8|A0A103XZR8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021899 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 5   RSTESLMATAIRVREVELRVKNLQGNQNFLWRKPWTRSAAIAKRQTKEAVAMWS 59
           RST S  ATAI V EV LRVKNL GNQ+F WRKPW  SAAIA+ Q ++A+A +S
Sbjct: 89  RSTGSFSATAINVMEVALRVKNLHGNQSFRWRKPWKTSAAIARVQRRDAIATYS 142

The following BLAST results are available for this feature:
BLAST of Carg13322 vs. NCBI nr
Match NameE-valueIdentityDescription
KVH99869.13.6e-0964.81hypothetical protein Ccrd_021899 [Cynara cardunculus var. scolymus][more]
BLAST of Carg13322 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg13322 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg13322 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A103XZR8|A0A103XZR8_CYNCS2.4e-0964.81Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13322-RACarg13322-RAmRNA