Carg13219 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13219
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Membrane protein insertion efficiency factor, putative
Location	Cucurbita_argyrosperma_scaffold_038 : 91416 .. 93907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGCAGCACATTTGGAGGGGACTGACATGGCGGTTCTTCCCACCACAAATTGCCACAAACTCCAAAAACCGATCTTCTTCGCCGGCGGCTGCCAGCAAAGGCACCGTTCTGCTGCCGCCTTCAGTATTCGATTTAATGGCCAGAAGCTCCGTCGGCCGCTCATCATAAGCGAAACGCGCGCCACATCGAATTCAAGCGCGAACGGAGACCAAGGTACTCGCCTCTTCTTCCTTCCTTCATGTTTTTATGCAATCGATGTATAGATTATGATGAATTAGGGCATTTGAATCGTGTTCATAGATGGCGAAGTGGACAATCTGGGGGTTAAAGCTGCATTATCCATGCTCAAATTCTACAAACGTAAGTAGAATCGTGTTATTTGTTCGGTTTACACTTCCAATTCGAAGAATCCTCTTAAATTTCGTTCGGGAATTGAAGGGAATGGTAATTGTTGAGCACTGATTCGGAGTGAAATGTGAGCAGGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATTTTGACTGCTTGGCGTCTCTGCCGCTGCAATCCCCTTGGTAATGACATTACTCTCATTCAACCTTCGGGAACGGAAATTTGTCGATGTTTTTTCTTTGATTTTTGATTCTAGGTCATTGCTTCTTTGTAGGTGGATCTGGGTTTGATCCTCCACGATGGTTTGATGAAGAAAGGTTGCCAGAACCAGAAGATTGACAATTTCAAATACTGCATAGTAATTGGTATGTCCTGATGCAGACCATGAATGATTTTTCAATTTGCTTTCCTGAGATTACATTCTAGGCAAATAGGTTATGCAAATGCACTGATCTCAAATCCACCCCCTTAGCCGCACATGGGCTCTGATATCATTTGTAACAGTCCAAGTCCACCGCTAATAGATATCATCCTCTTTGACCTTTCCCTCAAGGTTTAAAACGCGTATGCTAGAGAGAGATTTCCACACCCTTGTAAGGTTCAAATCCATCCCTTGGTGGCCCAACGTCCTCACTGGCACACCGCCCAATGTCTGGCTCGATACAATTTGTAACAGTCCAAGTCCACCGCTAACAGATATTGTCCTCTTTGAACTTTCCCTCATGGGCTTCTCCTCAAGGTCTTAAAATGCATATGCTAGGGAGAGTTTTCCACGCCCTTATAAGGAATGTTCCGTTCCCCTCTCTAATCAAGGTGGGATCTCAAATAAAATATCAGTTAGCCGTGGACTTGGACTGTTACAATAAATTAGGGAGGGTTTTGATGAGGAAAGATGTTGCAGGAACCAGGAATATACAGGGTAGGGTTCTGTTGATTTGAAAATAGTGAAGTTTCCCATTGAAATTGATAACTCCTGGATAAACACATTTTGCATCAAGTTGGATAAACAAATAGACAATTCAGGTGTCAAAATAGAGCCCTTTTTTCCTAATGACTCTGAATTTAGGTTGGCTAGGTCTAGACCATCTACAACACTGGATTTATGAAGAAAGCATGTGCAAACATTCCGACCTTAACATGATAGGTTGAGATTGCATGTTCTATATGAGGTCGACTTCCTTAAAGAGTATACGAAATGAAGATATCGTCCCACTCTTTGCTCGTCGTCTATTACACTACTAGAAGATATCGTCCCACTCGTTGATTGTGTTTTGTTGATTGTCTATTACACTGCTACTACACTCGATGCAATCTAAAAAACATGGACTCGAATTGCTTAAAGTTTTGAGTTAATTTATGATTCAATATCGTTCTTATGCCTCACTCGGACATGGACTCGTATATTTTCATAGACAACCCACAAAATTGAAGCCATGTTCAATCACTGGATCAAAAGTTTAAGTTATTGGGCTAAATCCATATTTTCTTTCCTCTTTCCTGCCGTTTTGAGAAGTTTTCTGTTCTGTAATTTAATTTAGTTTAGTTTTCTGCCGCTTTTAAGGTTCTTTCAACCTCACTGCACAGATTTTTTGTGCAGGTTGTATTGGCTAATGTGGTTGATCGTTGTGCTGTTTGGGGGATGTTTGGGAGCTAATGCCCTGTGCATAGTGGATTGTTGTAGAAAGTAACCTGTTGTGCTGTTTGGGGGATCTTTGGGAGCTAATGCCCTGTGCATAGTGGATTGTTGTAGAAAGTAACCTGTTATACAAATTACATTCAATGATTTTGATTACTCTCATATTCCAACCTCTAATACTTTGATAATGTATATATATGGGGTAACTGTACCGGTACAAGTCTATTGCGAGTAGATATTATTCTTTTTGAGCTTTTCCTTCCGGACTTCCTCTCAAAGTTTTAAAATATGAGAGGTTTCTATACTCTTATAAAGAATATTTTGTTTCTCTCCAACCAATATAGGATCTCACAATCCACCCCCTTTGGTGGCCGGCATCCTTCTTGACACTCGTTCCTCTTTCCAATTGATA

mRNA sequence

GTCTGCAGCACATTTGGAGGGGACTGACATGGCGGTTCTTCCCACCACAAATTGCCACAAACTCCAAAAACCGATCTTCTTCGCCGGCGGCTGCCAGCAAAGGCACCGTTCTGCTGCCGCCTTCAGTATTCGATTTAATGGCCAGAAGCTCCGTCGGCCGCTCATCATAAGCGAAACGCGCGCCACATCGAATTCAAGCGCGAACGGAGACCAAGATGGCGAAGTGGACAATCTGGGGGTTAAAGCTGCATTATCCATGCTCAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATTTTGACTGCTTGGCGTCTCTGCCGCTGCAATCCCCTTGGTGGATCTGGGTTTGATCCTCCACGATGGTTTGATGAAGAAAGGTTGCCAGAACCAGAAGATTGACAATTTCAAATACTGCATAGTAATTGGTTGTATTGGCTAATGTGGTTGATCGTTGTGCTGTTTGGGGGATGTTTGGGAGCTAATGCCCTGTGCATAGTGGATTGTTGTAGAAAGTAACCTGTTGTGCTGTTTGGGGGATCTTTGGGAGCTAATGCCCTGTGCATAGTGGATTGTTGTAGAAAGTAACCTGTTATACAAATTACATTCAATGATTTTGATTACTCTCATATTCCAACCTCTAATACTTTGATAATGTATATATATGGGGTAACTGTACCGGTACAAGTCTATTGCGAGTAGATATTATTCTTTTTGAGCTTTTCCTTCCGGACTTCCTCTCAAAGTTTTAAAATATGAGAGGTTTCTATACTCTTATAAAGAATATTTTGTTTCTCTCCAACCAATATAGGATCTCACAATCCACCCCCTTTGGTGGCCGGCATCCTTCTTGACACTCGTTCCTCTTTCCAATTGATA

Coding sequence (CDS)

ATGGCGGTTCTTCCCACCACAAATTGCCACAAACTCCAAAAACCGATCTTCTTCGCCGGCGGCTGCCAGCAAAGGCACCGTTCTGCTGCCGCCTTCAGTATTCGATTTAATGGCCAGAAGCTCCGTCGGCCGCTCATCATAAGCGAAACGCGCGCCACATCGAATTCAAGCGCGAACGGAGACCAAGATGGCGAAGTGGACAATCTGGGGGTTAAAGCTGCATTATCCATGCTCAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATTTTGACTGCTTGGCGTCTCTGCCGCTGCAATCCCCTTGGTGGATCTGGGTTTGATCCTCCACGATGGTTTGATGAAGAAAGGTTGCCAGAACCAGAAGATTGA

Protein sequence

MAVLPTTNCHKLQKPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSANGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDPPRWFDEERLPEPED

Homology

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BLAST of Carg13219 vs. NCBI nr
Match: XP_022966116.1 (UPF0161 protein At3g09310 [Cucurbita maxima] >XP_022966117.1 UPF0161 protein At3g09310 [Cucurbita maxima])

HSP 1 Score: 310.1 bits (793), Expect = 4.2e-81
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQKPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSANG 60
           MAVLPTTNCHKLQKPIFFAGGCQQ HRSAAAFSIRFNGQKLRRPLIISETRATSNSSAN 
Sbjct: 1   MAVLPTTNCHKLQKPIFFAGGCQQTHRSAAAFSIRFNGQKLRRPLIISETRATSNSSANE 60

Query: 61  DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTA 120
           DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRY+PTCSEYSMQAYKKYGVAKGTILTA
Sbjct: 61  DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYVPTCSEYSMQAYKKYGVAKGTILTA 120

Query: 121 WRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           WRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 WRLCRCNPLGGSGFDPPRWFDEERLPEPED 150

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BLAST of Carg13219 vs. NCBI nr
Match: XP_022931846.1 (UPF0161 protein At3g09310 [Cucurbita moschata])

HSP 1 Score: 305.8 bits (782), Expect = 7.9e-80
Identity = 147/152 (96.71%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MAVLPTTNCHKL--QKPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNCHKL  Q PIFFAGGCQ+ HRSAAAFSIRFNGQKLRRPLIISETRATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGGCQKSHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

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BLAST of Carg13219 vs. NCBI nr
Match: XP_023518310.1 (UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 5.9e-75
Identity = 141/152 (92.76%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAVLPTTNCHKL--QKPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNCHKL  Q PIFFAG C Q  RSAAAFSIRFNGQKLRRPLIISE+RATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGRCHQSRRSAAAFSIRFNGQKLRRPLIISESRATSNSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NRDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNP G SGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPFGVSGFDPPRWFDEERLPEPED 152

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BLAST of Carg13219 vs. NCBI nr
Match: XP_004142065.1 (PREDICTED: UPF0161 protein At3g09310 [Cucumis sativus] >XP_011653638.1 PREDICTED: UPF0161 protein At3g09310 [Cucumis sativus] >KGN54258.1 hypothetical protein Csa_4G296120 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 3.6e-72
Identity = 137/152 (90.13%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQ--KPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNCH  Q   PIFFAG C QR  SAA FSIRFN +KLRR LI+SETRATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Carg13219 vs. NCBI nr
Match: XP_008448003.1 (PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: UPF0161 protein At3g09310 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 3.3e-70
Identity = 133/152 (87.50%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQ--KPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNC+  Q   PIFF G C QR   AA FSIRFN +KLRRPLI+SETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Carg13219 vs. TAIR10
Match: AT3G09310.1 (unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-37
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 47  ISETRATSNSSANGDQDG-EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQ 106
           +S     S       QDG E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+
Sbjct: 50  LSAKSTPSKPDPASPQDGEELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSME 109

Query: 107 AYKKYGVAKGTILTAWRLCRCNPLGGSGFDPPRWFDE 143
           AYKKYGV KGT+LT WRLCRCNPLGGSGFDPPRWF E
Sbjct: 110 AYKKYGVLKGTVLTTWRLCRCNPLGGSGFDPPRWFGE 146

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BLAST of Carg13219 vs. Swiss-Prot
Match: sp|Q9SR32|U161_ARATH (UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-36
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 47  ISETRATSNSSANGDQDG-EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQ 106
           +S     S       QDG E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+
Sbjct: 50  LSAKSTPSKPDPASPQDGEELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSME 109

Query: 107 AYKKYGVAKGTILTAWRLCRCNPLGGSGFDPPRWFDE 143
           AYKKYGV KGT+LT WRLCRCNPLGGSGFDPPRWF E
Sbjct: 110 AYKKYGVLKGTVLTTWRLCRCNPLGGSGFDPPRWFGE 146

[Close]

BLAST of Carg13219 vs. Swiss-Prot
Match: sp|Q2S3T2|YIDD_SALRD (Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=SRU_1017 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-18
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 75  LSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGF 134
           + +++ Y+  +SP L  +CR+ PTCS Y++QA+++YG  KG +LT  RL RC+P GG G+
Sbjct: 17  IGLVRLYQLVLSPHLGRTCRFHPTCSAYAIQAFREYGALKGLVLTVHRLLRCHPWGGHGY 76

Query: 135 DPPRWFDEE 144
           DPPRWFDEE
Sbjct: 77  DPPRWFDEE 85

[Close]

BLAST of Carg13219 vs. Swiss-Prot
Match: sp|B0T0Z8|YIDD_CAUSK (Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain K31) OX=366602 GN=Caul_4526 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.5e-17
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 78  LKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDPP 137
           LK YK  +SP +   CRYLPTCSEY+ QA K +G  KG+ L   R+CRCNPLGGSG+DPP
Sbjct: 12  LKAYKTTLSPFIGRQCRYLPTCSEYAAQALKDHGPLKGSWLAVGRICRCNPLGGSGYDPP 71

[Close]

BLAST of Carg13219 vs. Swiss-Prot
Match: sp|B0K8I2|YIDD_THEP3 (Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=Teth39_2293 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-16
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 77  MLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDP 136
           ++K Y+R ISP+ P SCR+ PTCS+YS++A  KYG+ KG I++ WR+ RCNP    G+DP
Sbjct: 8   LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGGYDP 67

[Close]

BLAST of Carg13219 vs. Swiss-Prot
Match: sp|B0K5N7|YIDD_THEPX (Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=Teth514_2412 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-16
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 77  MLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGSGFDP 136
           ++K Y+R ISP+ P SCR+ PTCS+YS++A  KYG+ KG I++ WR+ RCNP    G+DP
Sbjct: 8   LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGGYDP 67

[Close]

BLAST of Carg13219 vs. TrEMBL
Match: tr|A0A0A0KXI4|A0A0A0KXI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 137/152 (90.13%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQ--KPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNCH  Q   PIFFAG C QR  SAA FSIRFN +KLRR LI+SETRATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Carg13219 vs. TrEMBL
Match: tr|A0A1S3BJN3|A0A1S3BJN3_CUCME (UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.2e-70
Identity = 133/152 (87.50%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQ--KPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60
           MAVLPTTNC+  Q   PIFF G C QR   AA FSIRFN +KLRRPLI+SETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 151
           TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED
Sbjct: 121 TAWRLCRCNPLGGSGFDPPRWFDEERLPEPED 152

[Close]

BLAST of Carg13219 vs. TrEMBL
Match: tr|A0A1R3H7U2|A0A1R3H7U2_COCAP (Putative membrane protein insertion efficiency factor OS=Corchorus capsularis OX=210143 GN=CCACVL1_21209 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 91/157 (57.96%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 1   MAVLPTTNCHKLQKPIFFAGGCQQRHRSAAAFSIRFNGQ----------KLRRPLIISET 60
           MAV+   N HK   P+        + ++  + SI+F+ Q            RR L ++  
Sbjct: 1   MAVINALNYHKPFSPLI------TQSKNPNSNSIKFDAQIPNQAFRFHVPARRNLTVN-- 60

Query: 61  RATSNSSANGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKY 120
            +  NS  N  QD EV++LGVKAALSML+FYKREISPL+P SCRY+PTCSEYSM+AYKKY
Sbjct: 61  GSLQNSDQNTPQDDEVESLGVKAALSMLRFYKREISPLIPKSCRYVPTCSEYSMEAYKKY 120

Query: 121 GVAKGTILTAWRLCRCNPLGGSGFDPPRWFDEERLPE 148
           GV KGT+LTAWRLCRCNPLGGSGFDPPRWFDEER  E
Sbjct: 121 GVVKGTVLTAWRLCRCNPLGGSGFDPPRWFDEERPTE 149

[Close]

BLAST of Carg13219 vs. TrEMBL
Match: tr|A0A2I0IHH7|A0A2I0IHH7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_036224 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 90/147 (61.22%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 6   TTNC--HKLQKPIFFAGGCQQRHRSAAAFSIRFNGQKLRRPLIISETRATSNSSANGDQD 65
           + NC   + Q P F     QQ    ++     FN   LRR      ++  S S  N  QD
Sbjct: 14  SANCVASRRQNPRFCPLNFQQHQNRSSIIGTSFN---LRRGRGSVASQLDSGSDPNSPQD 73

Query: 66  GEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRL 125
            + D+ GVK ALSML+FYKREISPLLPNSCRY+PTCSEYSM+AYKKYGVAKGT+LTAWRL
Sbjct: 74  EKEDSAGVKVALSMLRFYKREISPLLPNSCRYIPTCSEYSMEAYKKYGVAKGTVLTAWRL 133

Query: 126 CRCNPLGGSGFDPPRWFDEERLPEPED 151
           CRCNPLGGSGFDPPRWF+EER P PE+
Sbjct: 134 CRCNPLGGSGFDPPRWFNEER-PSPEE 156

[Close]

BLAST of Carg13219 vs. TrEMBL
Match: tr|A0A2P4I6V4|A0A2P4I6V4_QUESU (Upf0161 protein OS=Quercus suber OX=58331 GN=CFP56_67673 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-41
Identity = 87/159 (54.72%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 1   MAVLPTTNCHK-------LQKPIFFAGGCQ-----QRHRSAAAFSIRFNGQKLRRPLIIS 60
           MA++ + NCHK        Q P F     +     ++H S     I+  G + R  ++  
Sbjct: 1   MAIVVSPNCHKPFTSWPHSQYPNFKTPSSRFSTNHRKHNSINFVPIKTLGHRHRHQILYK 60

Query: 61  ETRATSNSSANGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYK 120
            +   SNS    + + EVDN+GVKAALSML FYKREISP++P SCRY+PTCSEYSM AYK
Sbjct: 61  LSTEDSNSGNVEEAENEVDNIGVKAALSMLNFYKREISPVIPKSCRYVPTCSEYSMAAYK 120

Query: 121 KYGVAKGTILTAWRLCRCNPLGGSGFDPPRWFDEERLPE 148
           KYGV KGT+LTAWRLCRCNPLGGSGFDPPRWF E  +PE
Sbjct: 121 KYGVVKGTVLTAWRLCRCNPLGGSGFDPPRWFGETSIPE 159

The following BLAST results are available for this feature:

BLAST of Carg13219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966116.1	4.2e-81	98.00	UPF0161 protein At3g09310 [Cucurbita maxima] >XP_022966117.1 UPF0161 protein At3...	[more]
XP_022931846.1	7.9e-80	96.71	UPF0161 protein At3g09310 [Cucurbita moschata]	[more]
XP_023518310.1	5.9e-75	92.76	UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo]	[more]
XP_004142065.1	3.6e-72	90.13	PREDICTED: UPF0161 protein At3g09310 [Cucumis sativus] >XP_011653638.1 PREDICTED...	[more]
XP_008448003.1	3.3e-70	87.50	PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: U...	[more]

BLAST of Carg13219 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09310.1	1.2e-37	71.13	unknown protein	[more]

BLAST of Carg13219 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SR32\|U161_ARATH	2.1e-36	71.13	UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2	[more]
sp\|Q2S3T2\|YIDD_SALRD	2.6e-18	52.17	Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (str...	[more]
sp\|B0T0Z8\|YIDD_CAUSK	8.5e-17	61.67	Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain...	[more]
sp\|B0K8I2\|YIDD_THEP3	7.2e-16	53.33	Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseu...	[more]
sp\|B0K5N7\|YIDD_THEPX	7.2e-16	53.33	Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter sp. ...	[more]

BLAST of Carg13219 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXI4\|A0A0A0KXI4_CUCSA	2.4e-72	90.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1	[more]
tr\|A0A1S3BJN3\|A0A1S3BJN3_CUCME	2.2e-70	87.50	UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1	[more]
tr\|A0A1R3H7U2\|A0A1R3H7U2_COCAP	2.1e-41	57.96	Putative membrane protein insertion efficiency factor OS=Corchorus capsularis OX...	[more]
tr\|A0A2I0IHH7\|A0A2I0IHH7_PUNGR	2.1e-41	61.22	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_036224 PE=3 SV=1	[more]
tr\|A0A2P4I6V4\|A0A2P4I6V4_QUESU	4.8e-41	54.72	Upf0161 protein OS=Quercus suber OX=58331 GN=CFP56_67673 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002696	Membr_insert_effic_factor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13219-RA	Carg13219-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002696	Putative membrane protein insertion efficiency factor	SMART	SM01234	Haemolytic_2	coord: 70..137 e-value: 6.1E-35 score: 132.1
IPR002696	Putative membrane protein insertion efficiency factor	PFAM	PF01809	Haemolytic	coord: 73..136 e-value: 1.6E-25 score: 88.7
IPR002696	Putative membrane protein insertion efficiency factor	TIGRFAM	TIGR00278	TIGR00278	coord: 76..137 e-value: 4.5E-21 score: 72.5
IPR002696	Putative membrane protein insertion efficiency factor	PANTHER	PTHR33383	FAMILY NOT NAMED	coord: 77..146
IPR002696	Putative membrane protein insertion efficiency factor	PRODOM	PD004225		coord: 85..138 e-value: 1.0E-24 score: 277.0
IPR002696	Putative membrane protein insertion efficiency factor	HAMAP	MF_00386	UPF0161_YidD	coord: 70..138 score: 20.718
None	No IPR available	PANTHER	PTHR33383:SF3	SUBFAMILY NOT NAMED	coord: 77..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13219	Cla018203	Watermelon (97103) v1	carwmB0580
Carg13219	Csa4G296120	Cucumber (Chinese Long) v2	carcuB0607
Carg13219	MELO3C003136	Melon (DHL92) v3.5.1	carmeB0584
Carg13219	ClCG04G008120	Watermelon (Charleston Gray)	carwcgB0569
Carg13219	CSPI04G14730	Wild cucumber (PI 183967)	carcpiB0613
Carg13219	Cucsa.066260	Cucumber (Gy14) v1	carcgyB0653
Carg13219	CmaCh07G010010	Cucurbita maxima (Rimu)	carcmaB0818
Carg13219	CmoCh07G010440	Cucurbita moschata (Rifu)	carcmoB0795
Carg13219	Lsi01G014330	Bottle gourd (USVL1VR-Ls)	carlsiB526
Carg13219	Cp4.1LG19g03400	Cucurbita pepo (Zucchini)	carcpeB0830
Carg13219	CsGy4G014200	Cucumber (Gy14) v2	carcgybB0581
Carg13219	MELO3C033192.2	Melon (DHL92) v3.6.1	carmedB0591
Carg13219	CsaV3_4G025070	Cucumber (Chinese Long) v3	carcucB0614
Carg13219	Cla97C04G074770	Watermelon (97103) v2	carwmbB0609
Carg13219	Bhi03G001564	Wax gourd	carwgoB0693

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13219	Watermelon (97103) v2	carwmbB0612
Carg13219	Silver-seed gourd	carcarB532
Carg13219	Cucurbita maxima (Rimu)	carcmaB0815
Carg13219	Cucurbita moschata (Rifu)	carcmoB0791
Carg13219	Cucurbita pepo (Zucchini)	carcpeB0825